RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 GAGE4Q13068 117 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 GAGE5Q13069 117 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 MSMO1Q15800 293 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 Q499Y3 187 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 GAGE13Q4V321 117 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 MUC21Q5SSG8 566 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 AADACL3Q5VUY0 350 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 HACD4Q5VWC8 232 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 ETFRF1Q6IPR1 90 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 SPAG11AQ6PDA7 123 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 PRSS54Q6PEW0 395 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 PHF5AQ7RTV0 110 aaKnown RBP1.39□□□□□ -2.19
USP40-211ENST00000464956 NKAIN3Q8N8D7 197 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 OR4D5Q8NGN0 318 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 OR51H1Q8NH63 302 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 GIPC3Q8TF64 312 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 C4orf36Q96KX1 117 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 CIB1Q99828 191 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 URM1Q9BTM9 101 aaKnown RBP1.39□□□□□ -2.19
USP40-211ENST00000464956 TMBIM4Q9HC24 238 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 ENY2Q9NPA8 101 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 HSPB7Q9UBY9 170 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 LGALS13Q9UHV8 139 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 TP53TG3Q9ULZ0 132 aa1.39□□□□□ -2.19
USP40-211ENST00000464956 A0A087WWL8 130 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 A0A1W2PNN7 141 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 C5orf51A6NDU8 294 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 ANKRD65E5RJM6 399 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 G3V2T6 193 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 M0R2P5 195 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 ZNF861PO60384 105 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 FAM107AO95990 144 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 RNASE2P10153 161 aaKnown RBP1.38□□□□□ -2.19
USP40-211ENST00000464956 RNASE4P34096 147 aaKnown RBP1.38□□□□□ -2.19
USP40-211ENST00000464956 HTR2BP41595 481 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 INPP1P49441 399 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 GYS2P54840 703 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 FGF8P55075 233 aaPredicted RBP1.38□□□□□ -2.19
USP40-211ENST00000464956 UBE2D3P61077 147 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 HSPE1P61604 102 aaKnown RBP1.38□□□□□ -2.19
USP40-211ENST00000464956 P2RY14Q15391 338 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 MAPRE2Q15555 327 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 ZIK1Q3SY52 487 aaPredicted RBP1.38□□□□□ -2.19
USP40-211ENST00000464956 HIGD2BQ4VC39 106 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 C4orf48Q5BLP8 95 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 C9orf116Q5BN46 136 aaPredicted RBP1.38□□□□□ -2.19
USP40-211ENST00000464956 LCE1AQ5T7P2 110 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 KRTAP26-1Q6PEX3 210 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 CLPSL2Q6UWE3 100 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 SECTM1Q8WVN6 248 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 MAFIPQ8WZ33 124 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 ACY3Q96HD9 319 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 KCNS1Q96KK3 526 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 LINC00477Q96M19 166 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 NSMCE2Q96MF7 247 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 KCNK15Q9H427 330 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 CCL28Q9NRJ3 127 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 AHNAK2Q8IVF2 5795 aa1.38□□□□□ -2.19
USP40-211ENST00000464956 TRGV11A0A075B6L2 103 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 TRAV8-7A0A075B6U6 113 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 IGHV3-73A0A0B4J1V6 119 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 TRAV8-4A0A0B4J246 113 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 PNMA8CA0A1B0GUJ8 204 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 LINC00854A0A1B0GVQ3 168 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 ZFP92A6NM28 416 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 KLLNB2CW77 178 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 INS-IGF2F8WCM5 200 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 M0R129 80 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 NME4O00746 187 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 ZNF253O75346 499 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 IGKV1-39P01597 117 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 P01737 135 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 IGKV1D-39P04432 117 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 GPX1P07203 203 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 FGF6P10767 208 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 RPL7P18124 248 aaKnown RBP1.37□□□□□ -2.19
USP40-211ENST00000464956 TALDO1P37837 337 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 UBE2BP63146 152 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 TMED1Q13445 227 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 BAK1Q16611 211 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 KRTAP13-2Q52LG2 175 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 MPV17L2Q567V2 206 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 PIK3CD-AS1Q5SR53 167 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 TMEM182Q6ZP80 229 aaPredicted RBP1.37□□□□□ -2.19
USP40-211ENST00000464956 IFT20Q8IY31 132 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 FAM19A2Q8N3H0 131 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 ARRDC1Q8N5I2 433 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 DHRSXQ8N5I4 330 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 ACBD7Q8N6N7 88 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 NANOGP1Q8N7R0 232 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 OR52I1Q8NGK6 324 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 OR13C8Q8NGS7 320 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 RNASEH2CQ8TDP1 164 aaKnown RBP1.37□□□□□ -2.19
USP40-211ENST00000464956 RAB2BQ8WUD1 216 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 ORAI1Q96D31 301 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 TVP23CQ96ET8 276 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 CENPNQ96H22 339 aaPredicted RBP1.37□□□□□ -2.19
USP40-211ENST00000464956 CARD19Q96LW7 228 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 ATP5SQ99766 215 aa1.37□□□□□ -2.19
USP40-211ENST00000464956 PDCD10Q9BUL8 212 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms