RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 C15orf53Q8NAA6 179 aa9.88□□□□□ -0.83
USP4-206ENST00000461553 C20orf144Q9BQM9 153 aa9.88□□□□□ -0.83
USP4-206ENST00000461553 H7BYZ3 331 aa9.87□□□□□ -0.83
USP4-206ENST00000461553 MPDU1O75352 247 aa9.87□□□□□ -0.83
USP4-206ENST00000461553 UPK1BO75841 260 aa9.87□□□□□ -0.83
USP4-206ENST00000461553 IL15RAQ13261 267 aa9.87□□□□□ -0.83
USP4-206ENST00000461553 ATP6V1FQ16864 119 aa9.87□□□□□ -0.83
USP4-206ENST00000461553 TMEM263Q8WUH6 116 aaKnown RBP9.87□□□□□ -0.83
USP4-206ENST00000461553 TRAV5A0A0B4J249 113 aa9.86□□□□□ -0.83
USP4-206ENST00000461553 PLAC8L1A1L4L8 177 aa9.86□□□□□ -0.83
USP4-206ENST00000461553 H3BQ15 152 aa9.86□□□□□ -0.83
USP4-206ENST00000461553 M0R2N4 97 aa9.86□□□□□ -0.83
USP4-206ENST00000461553 ZNF253O75346 499 aa9.86□□□□□ -0.83
USP4-206ENST00000461553 ATP5G1P05496 136 aa9.86□□□□□ -0.83
USP4-206ENST00000461553 AZU1P20160 251 aa9.86□□□□□ -0.83
USP4-206ENST00000461553 ATP5G3P48201 142 aa9.86□□□□□ -0.83
USP4-206ENST00000461553 ZNF493Q6ZR52 646 aa9.86□□□□□ -0.83
USP4-206ENST00000461553 SAT2Q96F10 170 aaPredicted RBP9.86□□□□□ -0.83
USP4-206ENST00000461553 NPCDR1Q9BY65 106 aa9.86□□□□□ -0.83
USP4-206ENST00000461553 PARD6GQ9BYG4 376 aaPredicted RBP9.86□□□□□ -0.83
USP4-206ENST00000461553 TIMM8BQ9Y5J9 83 aaPredicted RBP9.86□□□□□ -0.83
USP4-206ENST00000461553 DYNC1H1Q14204 4646 aaKnown RBP9.86□□□□□ -0.83
USP4-206ENST00000461553 DNAH11Q96DT5 4516 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 IGLV2-18A0A075B6J9 118 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 PRAC2D3DTV9 90 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 F5H768 121 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 PRAF2O60831 178 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 RLN2P04090 185 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 LEPP41159 167 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 LGALS9BQ3B8N2 356 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 RNF212Q495C1 297 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 LRRC37A5PQ49AS3 106 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 GFI1BQ5VTD9 330 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 RNASE8Q8TDE3 154 aaKnown RBP9.85□□□□□ -0.83
USP4-206ENST00000461553 CHAC2Q8WUX2 184 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 MRPL53Q96EL3 112 aaKnown RBP9.85□□□□□ -0.83
USP4-206ENST00000461553 ODF3Q96PU9 254 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 NMES1Q9C002 83 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 SLC25A31Q9H0C2 315 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 KCNIP2Q9NS61 270 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 ZNF586Q9NXT0 402 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 PTTG2Q9NZH5 202 aa9.85□□□□□ -0.83
USP4-206ENST00000461553 E5RGE8 158 aa9.84□□□□□ -0.83
USP4-206ENST00000461553 J3KRW8 73 aa9.84□□□□□ -0.83
USP4-206ENST00000461553 PDE6HQ13956 83 aa9.84□□□□□ -0.83
USP4-206ENST00000461553 FCN2Q15485 313 aa9.84□□□□□ -0.83
USP4-206ENST00000461553 CCDC28AQ8IWP9 274 aa9.84□□□□□ -0.83
USP4-206ENST00000461553 OR5C1Q8NGR4 320 aa9.84□□□□□ -0.83
USP4-206ENST00000461553 THAP6Q8TBB0 222 aa9.84□□□□□ -0.83
USP4-206ENST00000461553 ATG101Q9BSB4 218 aa9.84□□□□□ -0.83
USP4-206ENST00000461553 TMEM14CQ9P0S9 112 aa9.84□□□□□ -0.83
USP4-206ENST00000461553 TRBV19A0A075B6N1 114 aa9.83□□□□□ -0.84
USP4-206ENST00000461553 NPIPB6E9PJ23 425 aa9.83□□□□□ -0.84
USP4-206ENST00000461553 SIX6O95475 246 aa9.83□□□□□ -0.84
USP4-206ENST00000461553 HIST1H1EP10412 219 aaKnown RBP9.83□□□□□ -0.84
USP4-206ENST00000461553 CLINT1Q14677 625 aa9.83□□□□□ -0.84
USP4-206ENST00000461553 KIR3DS1Q14943 382 aa9.83□□□□□ -0.84
USP4-206ENST00000461553 AAMDCQ9H7C9 122 aa9.83□□□□□ -0.84
USP4-206ENST00000461553 NOP10Q9NPE3 64 aaKnown RBP9.83□□□□□ -0.84
USP4-206ENST00000461553 PRELID1Q9Y255 219 aa9.83□□□□□ -0.84
USP4-206ENST00000461553 TIMM9Q9Y5J7 89 aa9.83□□□□□ -0.84
USP4-206ENST00000461553 PKD1P98161 4303 aa9.82□□□□□ -0.84
USP4-206ENST00000461553 CBY3A6NI87 242 aa9.82□□□□□ -0.84
USP4-206ENST00000461553 PRSS29PA6NIE9 313 aa9.82□□□□□ -0.84
USP4-206ENST00000461553 SNURFLB1AK76 121 aa9.82□□□□□ -0.84
USP4-206ENST00000461553 INMT-MINDY4F8WBC2 141 aa9.82□□□□□ -0.84
USP4-206ENST00000461553 NUDT3O95989 172 aa9.82□□□□□ -0.84
USP4-206ENST00000461553 PYYP10082 97 aa9.82□□□□□ -0.84
USP4-206ENST00000461553 FAM3BP58499 235 aaPredicted RBP9.82□□□□□ -0.84
USP4-206ENST00000461553 CYCSP99999 105 aaKnown RBP9.82□□□□□ -0.84
USP4-206ENST00000461553 NHLH2Q02577 135 aa9.82□□□□□ -0.84
USP4-206ENST00000461553 SOHLH1Q5JUK2 328 aa9.82□□□□□ -0.84
USP4-206ENST00000461553 BLNKQ8WV28 456 aa9.82□□□□□ -0.84
USP4-206ENST00000461553 OR5AC2Q9NZP5 309 aa9.82□□□□□ -0.84
USP4-206ENST00000461553 KIAA1109Q2LD37 5005 aa9.82□□□□□ -0.84
USP4-206ENST00000461553 TRAV12-3A0A0B4J271 114 aa9.81□□□□□ -0.84
USP4-206ENST00000461553 M0R3E3 92 aa9.81□□□□□ -0.84
USP4-206ENST00000461553 PET100P0DJ07 73 aa9.81□□□□□ -0.84
USP4-206ENST00000461553 CT45A10P0DMU9 189 aa9.81□□□□□ -0.84
USP4-206ENST00000461553 DEFA1P59665 94 aa9.81□□□□□ -0.84
USP4-206ENST00000461553 DEFA3P59666 94 aa9.81□□□□□ -0.84
USP4-206ENST00000461553 GCSAMLQ5JQS6 135 aa9.81□□□□□ -0.84
USP4-206ENST00000461553 PYGO2Q9BRQ0 406 aa9.81□□□□□ -0.84
USP4-206ENST00000461553 SLC25A2Q9BXI2 301 aa9.81□□□□□ -0.84
USP4-206ENST00000461553 MRPL32Q9BYC8 188 aaKnown RBP9.81□□□□□ -0.84
USP4-206ENST00000461553 C7orf71A4D174 169 aa9.8□□□□□ -0.84
USP4-206ENST00000461553 C17orf112F2Z3M2 114 aa9.8□□□□□ -0.84
USP4-206ENST00000461553 RTL8CO15255 209 aa9.8□□□□□ -0.84
USP4-206ENST00000461553 SLC25A5P05141 298 aaKnown RBP9.8□□□□□ -0.84
USP4-206ENST00000461553 IFITM3Q01628 133 aa9.8□□□□□ -0.84
USP4-206ENST00000461553 Q6ZR54 194 aa9.8□□□□□ -0.84
USP4-206ENST00000461553 WDR61Q9GZS3 305 aaKnown RBP9.8□□□□□ -0.84
USP4-206ENST00000461553 A6NHS1 94 aa9.79□□□□□ -0.84
USP4-206ENST00000461553 SSNA1O43805 119 aa9.79□□□□□ -0.84
USP4-206ENST00000461553 NDUFB4O95168 129 aa9.79□□□□□ -0.84
USP4-206ENST00000461553 MIR17HGQ75NE6 70 aa9.79□□□□□ -0.84
USP4-206ENST00000461553 EXOC3-AS1Q8N2X6 119 aa9.79□□□□□ -0.84
USP4-206ENST00000461553 ZNF680Q8NEM1 530 aa9.79□□□□□ -0.84
USP4-206ENST00000461553 RNF141Q8WVD5 230 aa9.79□□□□□ -0.84
USP4-206ENST00000461553 PPP1R1CQ8WVI7 109 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms