RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 TRBV12-3P01733 135 aa6.56□□□□□ -1.36
CD44-208ENST00000428726 BLCAPP62952 87 aa6.56□□□□□ -1.36
CD44-208ENST00000428726 ARPC1AQ92747 370 aa6.56□□□□□ -1.36
CD44-208ENST00000428726 IGF2BP2-AS1Q96M15 143 aa6.56□□□□□ -1.36
CD44-208ENST00000428726 BBC3Q96PG8 261 aaPredicted RBP6.56□□□□□ -1.36
CD44-208ENST00000428726 IGHV4-30-2A0A087WSY4 118 aa6.56□□□□□ -1.36
CD44-208ENST00000428726 NPIPB5A8MRT5 1133 aa6.56□□□□□ -1.36
CD44-208ENST00000428726 LY6LH3BQJ8 138 aa6.56□□□□□ -1.36
CD44-208ENST00000428726 C15orf32Q32M92 178 aa6.56□□□□□ -1.36
CD44-208ENST00000428726 CFHR4Q92496 578 aa6.56□□□□□ -1.36
CD44-208ENST00000428726 DAZAP1Q96EP5 407 aaKnown RBP6.56□□□□□ -1.36
CD44-208ENST00000428726 FANCD2OSQ96PS1 177 aa6.56□□□□□ -1.36
CD44-208ENST00000428726 ZNF324O75467 553 aaPredicted RBP6.55□□□□□ -1.36
CD44-208ENST00000428726 COX19Q49B96 90 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 C11orf71Q6IPW1 123 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 EBLN2Q6P2I7 272 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 NIT1Q86X76 327 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 RNF125Q96EQ8 232 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 NAA38Q9BRA0 125 aaKnown RBP6.55□□□□□ -1.36
CD44-208ENST00000428726 SRSF8Q9BRL6 282 aaKnown RBP6.55□□□□□ -1.36
CD44-208ENST00000428726 SMKR1H3BMG3 65 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 TEX43Q6ZNM6 134 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 IL17RELQ6ZVW7 336 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 Q8N976 141 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 NEU4Q8WWR8 484 aaPredicted RBP6.55□□□□□ -1.36
CD44-208ENST00000428726 GNB1LQ9BYB4 327 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 CBY3A6NI87 242 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 PRAC2D3DTV9 90 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 MT-ND6P03923 174 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 PRTN3P24158 256 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 PCP4P48539 62 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 PTTG1IPP53801 180 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 PLP1P60201 277 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 PAFAH1B2P68402 229 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 WDR73Q6P4I2 378 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 ZNF491Q8N8L2 437 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 C18orf32Q8TCD1 76 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 GTSF1Q8WW33 167 aa6.55□□□□□ -1.36
CD44-208ENST00000428726 IGHV7-81A0A0B4J1V7 117 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 AVPP01185 164 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 TCRAP04437 139 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 CEACAM3P40198 252 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 KRTAP10-9P60411 292 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 RHOGP84095 191 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 FOXE3Q13461 319 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 C11orf44Q8N8P7 122 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 OR11H6Q8NGC7 330 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 KCNS1Q96KK3 526 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 LAMTOR2Q9Y2Q5 125 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 M0R1W7 72 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 IGKV3-20P01619 116 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 P01737 135 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 GP9P14770 177 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 MYCNOSP40205 109 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 LBHQ53QV2 105 aaPredicted RBP6.54□□□□□ -1.36
CD44-208ENST00000428726 VGLL1Q99990 258 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 C21orf62Q9NYP8 219 aa6.54□□□□□ -1.36
CD44-208ENST00000428726 SMIM27A0A1W2PRY6 76 aa6.53□□□□□ -1.36
CD44-208ENST00000428726 ZNF785A8K8V0 405 aa6.53□□□□□ -1.36
CD44-208ENST00000428726 IGLL1P15814 213 aa6.53□□□□□ -1.36
CD44-208ENST00000428726 LMO4P61968 165 aa6.53□□□□□ -1.36
CD44-208ENST00000428726 FAM231DQ6ZW35 169 aa6.53□□□□□ -1.36
CD44-208ENST00000428726 KLK15Q9H2R5 256 aa6.53□□□□□ -1.36
CD44-208ENST00000428726 C7orf69Q9H7B7 122 aa6.53□□□□□ -1.36
CD44-208ENST00000428726 CENPVL3A0A0U1RRI6 287 aa6.53□□□□□ -1.36
CD44-208ENST00000428726 TMEM213A2RRL7 107 aa6.53□□□□□ -1.36
CD44-208ENST00000428726 CCL25O15444 150 aa6.53□□□□□ -1.36
CD44-208ENST00000428726 HLA-DRB1P01911 266 aa6.53□□□□□ -1.36
CD44-208ENST00000428726 IGF1P05019 195 aa6.53□□□□□ -1.36
CD44-208ENST00000428726 ARMS2P0C7Q2 107 aa6.53□□□□□ -1.36
CD44-208ENST00000428726 IGLC2P0DOY2 106 aa6.53□□□□□ -1.36
CD44-208ENST00000428726 IGLC3P0DOY3 106 aa6.53□□□□□ -1.36
CD44-208ENST00000428726 RNASE8Q8TDE3 154 aaKnown RBP6.53□□□□□ -1.36
CD44-208ENST00000428726 CCL19Q99731 98 aa6.53□□□□□ -1.36
CD44-208ENST00000428726 MSRB1Q9NZV6 116 aa6.53□□□□□ -1.36
CD44-208ENST00000428726 NCR2O95944 276 aa6.52□□□□□ -1.36
CD44-208ENST00000428726 Q0VG73 95 aa6.52□□□□□ -1.36
CD44-208ENST00000428726 COL5A1-AS1Q5SY13 56 aa6.52□□□□□ -1.36
CD44-208ENST00000428726 SMIM12Q96EX1 92 aa6.52□□□□□ -1.36
CD44-208ENST00000428726 IZUMO1RA6ND01 250 aa6.52□□□□□ -1.37
CD44-208ENST00000428726 F6UB75 175 aa6.52□□□□□ -1.37
CD44-208ENST00000428726 H3BUX3 64 aa6.52□□□□□ -1.37
CD44-208ENST00000428726 GAS8-AS1O95177 125 aa6.52□□□□□ -1.37
CD44-208ENST00000428726 FAM106CPP0CH98 169 aa6.52□□□□□ -1.37
CD44-208ENST00000428726 ESDP10768 282 aa6.52□□□□□ -1.37
CD44-208ENST00000428726 EGR2P11161 476 aaPredicted RBP6.52□□□□□ -1.37
CD44-208ENST00000428726 KIR3DS1Q14943 382 aa6.52□□□□□ -1.37
CD44-208ENST00000428726 FAM106AQ4KMX7 169 aa6.52□□□□□ -1.37
CD44-208ENST00000428726 MPV17L2Q567V2 206 aa6.52□□□□□ -1.37
CD44-208ENST00000428726 Q8N9W7 124 aa6.52□□□□□ -1.37
CD44-208ENST00000428726 WIPF2Q8TF74 440 aaPredicted RBP6.52□□□□□ -1.37
CD44-208ENST00000428726 C20orf202A1L168 122 aa6.52□□□□□ -1.37
CD44-208ENST00000428726 F8W735 103 aaPredicted RBP6.52□□□□□ -1.37
CD44-208ENST00000428726 HLA-DQA1P01909 254 aa6.52□□□□□ -1.37
CD44-208ENST00000428726 EFNA4P52798 201 aa6.52□□□□□ -1.37
CD44-208ENST00000428726 VAMP3Q15836 100 aa6.52□□□□□ -1.37
CD44-208ENST00000428726 NPBQ8NG41 125 aa6.52□□□□□ -1.37
CD44-208ENST00000428726 OR4F17Q8NGA8 305 aa6.52□□□□□ -1.37
CD44-208ENST00000428726 KLF12Q9Y4X4 402 aa6.52□□□□□ -1.37
CD44-208ENST00000428726 TEP1Q99973 2627 aaKnown RBP6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms