RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 WFDC3Q8IUB2 231 aa12.96□□□□□ -0.34
CCDC28B-202ENST00000421922 GBGT1Q8N5D6 347 aa12.96□□□□□ -0.34
CCDC28B-202ENST00000421922 TFPI2P48307 235 aa12.95□□□□□ -0.34
CCDC28B-202ENST00000421922 FAM90A2PQ658T7 463 aa12.95□□□□□ -0.34
CCDC28B-202ENST00000421922 ZNF747Q9BV97 191 aa12.95□□□□□ -0.34
CCDC28B-202ENST00000421922 SERTM2A0A1B0GWG4 89 aa12.94□□□□□ -0.34
CCDC28B-202ENST00000421922 ISLRO14498 428 aa12.94□□□□□ -0.34
CCDC28B-202ENST00000421922 TCRAP04437 139 aa12.94□□□□□ -0.34
CCDC28B-202ENST00000421922 ADCYAP1P18509 176 aa12.94□□□□□ -0.34
CCDC28B-202ENST00000421922 IGFL4Q6B9Z1 124 aa12.94□□□□□ -0.34
CCDC28B-202ENST00000421922 RNF182Q8N6D2 247 aa12.94□□□□□ -0.34
CCDC28B-202ENST00000421922 MRPL53Q96EL3 112 aaKnown RBP12.94□□□□□ -0.34
CCDC28B-202ENST00000421922 MS4A6AQ9H2W1 248 aa12.94□□□□□ -0.34
CCDC28B-202ENST00000421922 SIGLEC8Q9NYZ4 499 aa12.94□□□□□ -0.34
CCDC28B-202ENST00000421922 M0R3E3 92 aa12.93□□□□□ -0.34
CCDC28B-202ENST00000421922 S100A9P06702 114 aaKnown RBP12.93□□□□□ -0.34
CCDC28B-202ENST00000421922 RPL35P42766 123 aaKnown RBP12.93□□□□□ -0.34
CCDC28B-202ENST00000421922 SNRPD3P62318 126 aaKnown RBP12.93□□□□□ -0.34
CCDC28B-202ENST00000421922 SHISA2Q6UWI4 295 aa12.93□□□□□ -0.34
CCDC28B-202ENST00000421922 ADAMTSL5Q6ZMM2 481 aa12.93□□□□□ -0.34
CCDC28B-202ENST00000421922 GOLT1AQ6ZVE7 132 aa12.93□□□□□ -0.34
CCDC28B-202ENST00000421922 ARL6IP6Q8N6S5 226 aa12.93□□□□□ -0.34
CCDC28B-202ENST00000421922 ZNF738Q8NE65 137 aa12.93□□□□□ -0.34
CCDC28B-202ENST00000421922 CARHSP1Q9Y2V2 147 aaKnown RBP12.93□□□□□ -0.34
CCDC28B-202ENST00000421922 DIRC3C9JPN6 131 aa12.92□□□□□ -0.34
CCDC28B-202ENST00000421922 PSG3Q16557 428 aa12.92□□□□□ -0.34
CCDC28B-202ENST00000421922 DEFB114Q30KQ6 69 aa12.92□□□□□ -0.34
CCDC28B-202ENST00000421922 SVBPQ8N300 66 aa12.92□□□□□ -0.34
CCDC28B-202ENST00000421922 LINC00482Q8N8I6 264 aa12.92□□□□□ -0.34
CCDC28B-202ENST00000421922 C2CD4CQ8TF44 421 aa12.92□□□□□ -0.34
CCDC28B-202ENST00000421922 FMC1Q96HJ9 113 aa12.92□□□□□ -0.34
CCDC28B-202ENST00000421922 DERL1Q9BUN8 251 aa12.92□□□□□ -0.34
CCDC28B-202ENST00000421922 NAT8Q9UHE5 227 aa12.92□□□□□ -0.34
CCDC28B-202ENST00000421922 TRAV8-2A0A0B4J237 113 aa12.91□□□□□ -0.34
CCDC28B-202ENST00000421922 TRAV25A0A0B4J276 109 aa12.91□□□□□ -0.34
CCDC28B-202ENST00000421922 M0R036 132 aa12.91□□□□□ -0.34
CCDC28B-202ENST00000421922 HLA-DMBP28068 263 aa12.91□□□□□ -0.34
CCDC28B-202ENST00000421922 GNG4P50150 75 aa12.91□□□□□ -0.34
CCDC28B-202ENST00000421922 TMEM241Q24JQ0 296 aa12.91□□□□□ -0.34
CCDC28B-202ENST00000421922 C10orf91Q5T1B1 145 aa12.91□□□□□ -0.34
CCDC28B-202ENST00000421922 LCN12Q6JVE5 192 aa12.91□□□□□ -0.34
CCDC28B-202ENST00000421922 TVP23CQ96ET8 276 aa12.91□□□□□ -0.34
CCDC28B-202ENST00000421922 OR4C46A6NHA9 309 aa12.9□□□□□ -0.34
CCDC28B-202ENST00000421922 SOCS3O14543 225 aa12.9□□□□□ -0.34
CCDC28B-202ENST00000421922 TSPAN4O14817 238 aa12.9□□□□□ -0.34
CCDC28B-202ENST00000421922 SNAPINO95295 136 aa12.9□□□□□ -0.34
CCDC28B-202ENST00000421922 TAS2R60P59551 318 aa12.9□□□□□ -0.34
CCDC28B-202ENST00000421922 CD300EQ496F6 205 aaPredicted RBP12.9□□□□□ -0.34
CCDC28B-202ENST00000421922 TMEM61Q8N0U2 210 aa12.9□□□□□ -0.34
CCDC28B-202ENST00000421922 TRAV2A0A0B4J234 112 aa12.89□□□□□ -0.35
CCDC28B-202ENST00000421922 TRAV34A0A0B4J273 112 aa12.89□□□□□ -0.35
CCDC28B-202ENST00000421922 FBLL1A6NHQ2 334 aaKnown RBP12.89□□□□□ -0.35
CCDC28B-202ENST00000421922 K7EQG2 157 aa12.89□□□□□ -0.35
CCDC28B-202ENST00000421922 CD33P20138 364 aa12.89□□□□□ -0.35
CCDC28B-202ENST00000421922 PNRC1Q12796 327 aaPredicted RBP12.89□□□□□ -0.35
CCDC28B-202ENST00000421922 ADIRFQ15847 76 aa12.89□□□□□ -0.35
CCDC28B-202ENST00000421922 GUCA2BQ16661 112 aa12.89□□□□□ -0.35
CCDC28B-202ENST00000421922 TMEM183BQ1AE95 376 aa12.89□□□□□ -0.35
CCDC28B-202ENST00000421922 CENPWQ5EE01 88 aa12.89□□□□□ -0.35
CCDC28B-202ENST00000421922 TMEM75Q8N9X5 138 aa12.89□□□□□ -0.35
CCDC28B-202ENST00000421922 DCANP1Q8TF63 244 aa12.89□□□□□ -0.35
CCDC28B-202ENST00000421922 SPAG8Q99932 426 aaPredicted RBP12.89□□□□□ -0.35
CCDC28B-202ENST00000421922 IGKV2-40A0A087WW87 121 aaPredicted RBP12.88□□□□□ -0.35
CCDC28B-202ENST00000421922 ZNF705FA8MVS1 300 aaPredicted RBP12.88□□□□□ -0.35
CCDC28B-202ENST00000421922 C9JCJ5 164 aa12.88□□□□□ -0.35
CCDC28B-202ENST00000421922 IGKV2D-40P01614 121 aaPredicted RBP12.88□□□□□ -0.35
CCDC28B-202ENST00000421922 OR2K2Q8NGT1 345 aa12.88□□□□□ -0.35
CCDC28B-202ENST00000421922 OR10J6PQ8NGY7 276 aa12.88□□□□□ -0.35
CCDC28B-202ENST00000421922 ZNF688P0C7X2 276 aa12.88□□□□□ -0.35
CCDC28B-202ENST00000421922 PSMG4Q5JS54 123 aa12.88□□□□□ -0.35
CCDC28B-202ENST00000421922 PRNTQ86SH4 94 aa12.88□□□□□ -0.35
CCDC28B-202ENST00000421922 LINC00479Q96M42 142 aa12.88□□□□□ -0.35
CCDC28B-202ENST00000421922 NDFIP1Q9BT67 221 aa12.88□□□□□ -0.35
CCDC28B-202ENST00000421922 MCRIP2Q9BUT9 160 aaKnown RBP12.88□□□□□ -0.35
CCDC28B-202ENST00000421922 TENM1Q9UKZ4 2725 aa12.87□□□□□ -0.35
CCDC28B-202ENST00000421922 RBAKDNA6NC62 111 aa12.87□□□□□ -0.35
CCDC28B-202ENST00000421922 PRB4P10163 310 aaPredicted RBP12.87□□□□□ -0.35
CCDC28B-202ENST00000421922 FLI1Q01543 452 aaPredicted RBP12.87□□□□□ -0.35
CCDC28B-202ENST00000421922 TMEM78Q5T7P6 136 aa12.87□□□□□ -0.35
CCDC28B-202ENST00000421922 C9orf66Q5T8R8 295 aa12.87□□□□□ -0.35
CCDC28B-202ENST00000421922 Q86TA4 180 aa12.87□□□□□ -0.35
CCDC28B-202ENST00000421922 BAGE2Q86Y30 109 aa12.87□□□□□ -0.35
CCDC28B-202ENST00000421922 C20orf173Q96LM9 149 aa12.87□□□□□ -0.35
CCDC28B-202ENST00000421922 SGK494Q96LW2 274 aa12.87□□□□□ -0.35
CCDC28B-202ENST00000421922 SDF2L1Q9HCN8 221 aa12.87□□□□□ -0.35
CCDC28B-202ENST00000421922 PSG8Q9UQ74 426 aa12.87□□□□□ -0.35
CCDC28B-202ENST00000421922 KLF12Q9Y4X4 402 aa12.87□□□□□ -0.35
CCDC28B-202ENST00000421922 MGST1P10620 155 aaKnown RBP12.86□□□□□ -0.35
CCDC28B-202ENST00000421922 INSL3P51460 131 aa12.86□□□□□ -0.35
CCDC28B-202ENST00000421922 LY96Q9Y6Y9 160 aa12.86□□□□□ -0.35
CCDC28B-202ENST00000421922 TRAV8-1A0A0A6YYK1 113 aa12.85□□□□□ -0.35
CCDC28B-202ENST00000421922 CLRN3Q8NCR9 226 aa12.85□□□□□ -0.35
CCDC28B-202ENST00000421922 IGF2BP2-AS1Q96M15 143 aa12.85□□□□□ -0.35
CCDC28B-202ENST00000421922 BIN3Q9NQY0 253 aa12.85□□□□□ -0.35
CCDC28B-202ENST00000421922 TRBV6-1A0A0K0K1D8 114 aa12.84□□□□□ -0.35
CCDC28B-202ENST00000421922 PGPEP1LA6NFU8 196 aa12.84□□□□□ -0.35
CCDC28B-202ENST00000421922 PRAC2D3DTV9 90 aa12.84□□□□□ -0.35
CCDC28B-202ENST00000421922 IGLV1-51P01701 117 aa12.84□□□□□ -0.35
CCDC28B-202ENST00000421922 RPL23P62829 140 aaKnown RBP12.84□□□□□ -0.35
CCDC28B-202ENST00000421922 HIST1H1AQ02539 215 aaPredicted RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms