RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 CELA3BP08861 270 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 H0YJW9 148 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 BUB1B-PAK6H3BSN5 160 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 DEFB130BP0DP73 79 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 DEFB130AP0DP74 79 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 PFN2P35080 140 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 SRSF3P84103 164 aaKnown RBP6.43□□□□□ -1.38
SYNE1-210ENST00000409694 WBP1Q96G27 269 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 A0A1B0GX51 115 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 MGAMO43451 1857 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 HGFACQ04756 655 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 IL15RAQ13261 267 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 IGFBPL1Q8WX77 278 aa6.43□□□□□ -1.38
SYNE1-210ENST00000409694 MORN5Q5VZ52 161 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 NRTNQ99748 197 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 RLFQ13129 1914 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 IGKV1D-13A0A0B4J2D9 117 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 K7EP13 123 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 IGKV1-13P0DP09 117 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 CDKN1AP38936 164 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 WFDC12Q8WWY7 111 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 IGLV3-32A0A0A0MS00 114 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 H0YIZ8 118 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 LCNL1Q6ZST4 164 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 C3orf56Q8N813 242 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 SHANK2-AS3Q9BTD1 123 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 COX8AP10176 69 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 LYL1P12980 280 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 SH2D6Q7Z4S9 175 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 GLRX5Q86SX6 157 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 DKK4Q9UBT3 224 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 A0A1W2PR77 199 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 LINC01619G3V211 115 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 NDUFA12Q9UI09 145 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 TMEM200BQ69YZ2 307 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 LINC00114Q6XXX2 140 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 MSRB2Q9Y3D2 182 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 ATRAIDQ6UW56 229 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 VSIRQ9H7M9 311 aa6.42□□□□□ -1.38
SYNE1-210ENST00000409694 PLXNB3Q9ULL4 1909 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 CRYBA4P53673 196 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 FAM104BQ5XKR9 115 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 TRBV6-6A0A0A6YYG2 114 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 TAX1BP3O14907 124 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 RFPL3SP0C7P2 107 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 C2orf66Q6UXQ4 117 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 MDS2Q8NDY4 140 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 ZNF407Q9C0G0 2248 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 LINC01620Q4KN68 170 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 FAM201AQ5SY85 155 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 TMEM14EPQ6UXP3 125 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 PRR15LQ9BU68 103 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 RHPN1-AS1Q9BWJ2 59 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 SRRM5B3KS81 715 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 ANXA2RQ3ZCQ2 193 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 WFDC1Q9HC57 220 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 ANAPC1Q9H1A4 1944 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 PSPNO60542 156 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 ZNF134P52741 427 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 LGALS9BQ3B8N2 356 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 LGALS9CQ6DKI2 356 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 NTN3O00634 580 aaPredicted RBP6.41□□□□□ -1.38
SYNE1-210ENST00000409694 FXYD7P58549 80 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 A8MWP6 167 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 ATP5G1P05496 136 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 RHOHQ15669 191 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 C4orf48Q5BLP8 95 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 IGHV1-18A0A0C4DH31 117 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 NMSQ5H8A3 153 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 LY6G6FQ5SQ64 297 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 C20orf78Q9BR46 151 aa6.41□□□□□ -1.38
SYNE1-210ENST00000409694 TICRRQ7Z2Z1 1910 aa6.4□□□□□ -1.38
SYNE1-210ENST00000409694 TMEM178BH3BS89 294 aa6.4□□□□□ -1.38
SYNE1-210ENST00000409694 PLXNA3P51805 1871 aa6.4□□□□□ -1.38
SYNE1-210ENST00000409694 C15orf53Q8NAA6 179 aa6.4□□□□□ -1.38
SYNE1-210ENST00000409694 COL11A2P13942 1736 aaPredicted RBP6.4□□□□□ -1.38
SYNE1-210ENST00000409694 NDPQ00604 133 aa6.4□□□□□ -1.38
SYNE1-210ENST00000409694 Q6ZVH6 145 aa6.4□□□□□ -1.38
SYNE1-210ENST00000409694 C14orf132Q9NPU4 83 aa6.4□□□□□ -1.38
SYNE1-210ENST00000409694 TNRC6BQ9UPQ9 1833 aaKnown RBP6.4□□□□□ -1.38
SYNE1-210ENST00000409694 IGHV1-46P01743 117 aa6.4□□□□□ -1.38
SYNE1-210ENST00000409694 RNF152Q8N8N0 203 aa6.4□□□□□ -1.38
SYNE1-210ENST00000409694 C9orf106Q8NAJ2 232 aa6.4□□□□□ -1.38
SYNE1-210ENST00000409694 Q8TAT8 98 aa6.4□□□□□ -1.38
SYNE1-210ENST00000409694 CDKN1BP46527 198 aa6.4□□□□□ -1.38
SYNE1-210ENST00000409694 SLC25A29Q8N8R3 303 aa6.4□□□□□ -1.39
SYNE1-210ENST00000409694 SIGLEC9Q9Y336 463 aa6.4□□□□□ -1.39
SYNE1-210ENST00000409694 PYGO2Q9BRQ0 406 aa6.4□□□□□ -1.39
SYNE1-210ENST00000409694 F8VRH5 84 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 MRPL55Q7Z7F7 128 aaKnown RBP6.39□□□□□ -1.39
SYNE1-210ENST00000409694 TMEM219Q86XT9 240 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 MRPL36Q9P0J6 103 aaKnown RBP6.39□□□□□ -1.39
SYNE1-210ENST00000409694 GREB1LQ9C091 1923 aaPredicted RBP6.39□□□□□ -1.39
SYNE1-210ENST00000409694 H0YGX0 51 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 H3BUX3 64 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 BTCP35070 178 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 ETDCA0A1B0GVM5 59 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 UBE2E2Q96LR5 201 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 HS3ST6Q96QI5 342 aa6.39□□□□□ -1.39
SYNE1-210ENST00000409694 IGHV1OR15-1A0A075B7D0 117 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms