RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 MEF2BQ02080 365 aaPredicted RBP13.49□□□□□ -0.25
SDC1-203ENST00000403076 BEAN1Q3B7T3 259 aa13.49□□□□□ -0.25
SDC1-203ENST00000403076 ZNF506Q5JVG8 444 aa13.49□□□□□ -0.25
SDC1-203ENST00000403076 C5orf17Q8NAS9 161 aa13.49□□□□□ -0.25
SDC1-203ENST00000403076 RPUSD4Q96CM3 377 aaKnown RBP13.49□□□□□ -0.25
SDC1-203ENST00000403076 ZMAT5Q9UDW3 170 aaKnown RBP13.49□□□□□ -0.25
SDC1-203ENST00000403076 SORL1Q92673 2214 aa13.49□□□□□ -0.25
SDC1-203ENST00000403076 OR11H12B2RN74 326 aa13.49□□□□□ -0.25
SDC1-203ENST00000403076 GTSCR1Q86UQ5 136 aa13.49□□□□□ -0.25
SDC1-203ENST00000403076 MAP6D1Q9H9H5 199 aa13.49□□□□□ -0.25
SDC1-203ENST00000403076 EPDR1Q9UM22 224 aa13.49□□□□□ -0.25
SDC1-203ENST00000403076 LINC00862A6NCI5 91 aa13.48□□□□□ -0.25
SDC1-203ENST00000403076 F6UZH7 168 aa13.48□□□□□ -0.25
SDC1-203ENST00000403076 G3V4G9 280 aa13.48□□□□□ -0.25
SDC1-203ENST00000403076 CD7P09564 240 aa13.48□□□□□ -0.25
SDC1-203ENST00000403076 CD81P60033 236 aa13.48□□□□□ -0.25
SDC1-203ENST00000403076 GNG5P63218 68 aa13.48□□□□□ -0.25
SDC1-203ENST00000403076 MRPL53Q96EL3 112 aaKnown RBP13.48□□□□□ -0.25
SDC1-203ENST00000403076 PEA15Q15121 130 aa13.47□□□□□ -0.25
SDC1-203ENST00000403076 TRRAPQ9Y4A5 3859 aa13.46□□□□□ -0.25
SDC1-203ENST00000403076 RAB19A4D1S5 217 aa13.46□□□□□ -0.25
SDC1-203ENST00000403076 ODF3L2Q3SX64 289 aa13.46□□□□□ -0.25
SDC1-203ENST00000403076 SAMD5Q5TGI4 173 aa13.46□□□□□ -0.25
SDC1-203ENST00000403076 COMMD7Q86VX2 200 aa13.46□□□□□ -0.25
SDC1-203ENST00000403076 CCDC28AQ8IWP9 274 aa13.46□□□□□ -0.25
SDC1-203ENST00000403076 TREM1Q9NP99 234 aa13.46□□□□□ -0.25
SDC1-203ENST00000403076 DIRC3C9JPN6 131 aa13.45□□□□□ -0.26
SDC1-203ENST00000403076 PRAC2D3DTV9 90 aa13.45□□□□□ -0.26
SDC1-203ENST00000403076 K7EQM0 130 aa13.45□□□□□ -0.26
SDC1-203ENST00000403076 PDE6DO43924 150 aa13.45□□□□□ -0.26
SDC1-203ENST00000403076 DEFB1P60022 68 aa13.45□□□□□ -0.26
SDC1-203ENST00000403076 EBLN2Q6P2I7 272 aa13.45□□□□□ -0.26
SDC1-203ENST00000403076 GOLT1AQ6ZVE7 132 aa13.45□□□□□ -0.26
SDC1-203ENST00000403076 APRG1Q8IVJ8 170 aa13.45□□□□□ -0.26
SDC1-203ENST00000403076 HIST1H2BAQ96A08 127 aa13.45□□□□□ -0.26
SDC1-203ENST00000403076 TCEAL7Q9BRU2 100 aa13.45□□□□□ -0.26
SDC1-203ENST00000403076 IGKV2-40A0A087WW87 121 aaPredicted RBP13.44□□□□□ -0.26
SDC1-203ENST00000403076 SCO2A0A1W2PP80 73 aa13.44□□□□□ -0.26
SDC1-203ENST00000403076 F6UB75 175 aa13.44□□□□□ -0.26
SDC1-203ENST00000403076 PEX7O00628 323 aa13.44□□□□□ -0.26
SDC1-203ENST00000403076 IGKV2D-40P01614 121 aaPredicted RBP13.44□□□□□ -0.26
SDC1-203ENST00000403076 TCRAP04437 139 aa13.44□□□□□ -0.26
SDC1-203ENST00000403076 CEBPGP53567 150 aa13.44□□□□□ -0.26
SDC1-203ENST00000403076 ARL6IP6Q8N6S5 226 aa13.44□□□□□ -0.26
SDC1-203ENST00000403076 OR10J6PQ8NGY7 276 aa13.44□□□□□ -0.26
SDC1-203ENST00000403076 PRR25Q96S07 402 aa13.44□□□□□ -0.26
SDC1-203ENST00000403076 ATG101Q9BSB4 218 aa13.44□□□□□ -0.26
SDC1-203ENST00000403076 SMDT1Q9H4I9 107 aa13.44□□□□□ -0.26
SDC1-203ENST00000403076 KNCNA6PVL3 124 aa13.44□□□□□ -0.26
SDC1-203ENST00000403076 NDUFS6O75380 124 aaKnown RBP13.44□□□□□ -0.26
SDC1-203ENST00000403076 AKR1C3P42330 323 aa13.44□□□□□ -0.26
SDC1-203ENST00000403076 SRSF3P84103 164 aaKnown RBP13.44□□□□□ -0.26
SDC1-203ENST00000403076 HIST1H1AQ02539 215 aaPredicted RBP13.44□□□□□ -0.26
SDC1-203ENST00000403076 EGFEM1PQ0D2K5 195 aa13.44□□□□□ -0.26
SDC1-203ENST00000403076 CYB561D1Q8N8Q1 229 aa13.44□□□□□ -0.26
SDC1-203ENST00000403076 OR8A1Q8NGG7 326 aa13.44□□□□□ -0.26
SDC1-203ENST00000403076 ANK2Q01484 3957 aa13.43□□□□□ -0.26
SDC1-203ENST00000403076 ZNF705DP0CH99 300 aaPredicted RBP13.43□□□□□ -0.26
SDC1-203ENST00000403076 ZNF705BP0CI00 300 aaPredicted RBP13.43□□□□□ -0.26
SDC1-203ENST00000403076 KRTAP10-11P60412 298 aa13.43□□□□□ -0.26
SDC1-203ENST00000403076 ZNF124Q15973 351 aa13.43□□□□□ -0.26
SDC1-203ENST00000403076 ACTL10Q5JWF8 245 aa13.43□□□□□ -0.26
SDC1-203ENST00000403076 FOXI2Q6ZQN5 318 aa13.43□□□□□ -0.26
SDC1-203ENST00000403076 FAM110AQ9BQ89 295 aa13.43□□□□□ -0.26
SDC1-203ENST00000403076 SERTM2A0A1B0GWG4 89 aa13.42□□□□□ -0.26
SDC1-203ENST00000403076 CNN1P51911 297 aaKnown RBP13.42□□□□□ -0.26
SDC1-203ENST00000403076 NDUFA5Q16718 116 aa13.42□□□□□ -0.26
SDC1-203ENST00000403076 OR4B1Q8NGF8 309 aa13.42□□□□□ -0.26
SDC1-203ENST00000403076 SAV1Q9H4B6 383 aaPredicted RBP13.42□□□□□ -0.26
SDC1-203ENST00000403076 DNHD1Q96M86 4753 aa13.41□□□□□ -0.26
SDC1-203ENST00000403076 A0A0J9YX75 114 aa13.41□□□□□ -0.26
SDC1-203ENST00000403076 TMEM250H0YL14 139 aa13.41□□□□□ -0.26
SDC1-203ENST00000403076 DUSP14O95147 198 aaKnown RBP13.41□□□□□ -0.26
SDC1-203ENST00000403076 SRP19P09132 144 aaKnown RBP13.41□□□□□ -0.26
SDC1-203ENST00000403076 UBE2G1P62253 170 aa13.41□□□□□ -0.26
SDC1-203ENST00000403076 ERCC8Q13216 396 aa13.41□□□□□ -0.26
SDC1-203ENST00000403076 GDF5OSQ5U4N7 250 aa13.41□□□□□ -0.26
SDC1-203ENST00000403076 UQCC3Q6UW78 93 aa13.41□□□□□ -0.26
SDC1-203ENST00000403076 EIF4E3Q8N5X7 224 aaKnown RBP13.41□□□□□ -0.26
SDC1-203ENST00000403076 SGK494Q96LW2 274 aa13.41□□□□□ -0.26
SDC1-203ENST00000403076 VGLL1Q99990 258 aa13.41□□□□□ -0.26
SDC1-203ENST00000403076 WFDC10AQ9H1F0 79 aa13.41□□□□□ -0.26
SDC1-203ENST00000403076 C19orf73Q9NVV2 129 aa13.41□□□□□ -0.26
SDC1-203ENST00000403076 TRAV34A0A0B4J273 112 aa13.4□□□□□ -0.26
SDC1-203ENST00000403076 RBAKDNA6NC62 111 aa13.4□□□□□ -0.26
SDC1-203ENST00000403076 IGKV3-20P01619 116 aa13.4□□□□□ -0.26
SDC1-203ENST00000403076 TMEM78Q5T7P6 136 aa13.4□□□□□ -0.26
SDC1-203ENST00000403076 DEFB125Q8N687 156 aa13.4□□□□□ -0.26
SDC1-203ENST00000403076 C11orf52Q96A22 123 aa13.4□□□□□ -0.26
SDC1-203ENST00000403076 LINC00479Q96M42 142 aa13.4□□□□□ -0.26
SDC1-203ENST00000403076 PPP1R14DQ9NXH3 145 aa13.4□□□□□ -0.26
SDC1-203ENST00000403076 PKD1L1Q8TDX9 2849 aa13.4□□□□□ -0.27
SDC1-203ENST00000403076 TRAV8-1A0A0A6YYK1 113 aa13.39□□□□□ -0.27
SDC1-203ENST00000403076 STHQ8IWL8 128 aa13.39□□□□□ -0.27
SDC1-203ENST00000403076 AGPAT4-IT1Q9H0P7 198 aa13.39□□□□□ -0.27
SDC1-203ENST00000403076 SLC35B3Q9H1N7 401 aa13.39□□□□□ -0.27
SDC1-203ENST00000403076 C9JQL5 133 aa13.39□□□□□ -0.27
SDC1-203ENST00000403076 HLA-DRB4P13762 266 aa13.39□□□□□ -0.27
SDC1-203ENST00000403076 ZNF674Q2M3X9 581 aa13.39□□□□□ -0.27
SDC1-203ENST00000403076 C9orf47Q6ZRZ4 202 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms