RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ODF3L2Q3SX64 289 aa6.81□□□□□ -1.32
VPS53-203ENST00000401468 LCN15Q6UWW0 184 aa6.81□□□□□ -1.32
VPS53-203ENST00000401468 FAM210AQ96ND0 272 aa6.81□□□□□ -1.32
VPS53-203ENST00000401468 ACTR3CQ9C0K3 210 aaPredicted RBP6.81□□□□□ -1.32
VPS53-203ENST00000401468 ZNF331Q9NQX6 463 aaPredicted RBP6.81□□□□□ -1.32
VPS53-203ENST00000401468 ZNF586Q9NXT0 402 aa6.81□□□□□ -1.32
VPS53-203ENST00000401468 TRAV8-2A0A0B4J237 113 aa6.8□□□□□ -1.32
VPS53-203ENST00000401468 TRAV1-1A0A0B4J248 108 aa6.8□□□□□ -1.32
VPS53-203ENST00000401468 A0A1W2PPV4 95 aa6.8□□□□□ -1.32
VPS53-203ENST00000401468 A8MZ25 164 aa6.8□□□□□ -1.32
VPS53-203ENST00000401468 CD7P09564 240 aa6.8□□□□□ -1.32
VPS53-203ENST00000401468 ARL14EPLP0DKL9 152 aa6.8□□□□□ -1.32
VPS53-203ENST00000401468 PYYP10082 97 aa6.8□□□□□ -1.32
VPS53-203ENST00000401468 FHITP49789 147 aa6.8□□□□□ -1.32
VPS53-203ENST00000401468 CMC4P56277 68 aaPredicted RBP6.8□□□□□ -1.32
VPS53-203ENST00000401468 CASC10Q5T4H9 136 aa6.8□□□□□ -1.32
VPS53-203ENST00000401468 FAM122CQ6P4D5 195 aa6.8□□□□□ -1.32
VPS53-203ENST00000401468 FAM24BQ8N5W8 94 aa6.8□□□□□ -1.32
VPS53-203ENST00000401468 LYPD6BQ8NI32 183 aa6.8□□□□□ -1.32
VPS53-203ENST00000401468 MUC7Q8TAX7 377 aa6.8□□□□□ -1.32
VPS53-203ENST00000401468 PAXXQ9BUH6 204 aa6.8□□□□□ -1.32
VPS53-203ENST00000401468 OR51M1Q9H341 326 aa6.8□□□□□ -1.32
VPS53-203ENST00000401468 CLEC5AQ9NY25 188 aa6.8□□□□□ -1.32
VPS53-203ENST00000401468 A8MTW9 85 aa6.79□□□□□ -1.32
VPS53-203ENST00000401468 SLC17A3O00476 420 aa6.79□□□□□ -1.32
VPS53-203ENST00000401468 CXorf1O96002 111 aa6.79□□□□□ -1.32
VPS53-203ENST00000401468 NBEAP1P0C6P0 100 aa6.79□□□□□ -1.32
VPS53-203ENST00000401468 ATF4P18848 351 aaPredicted RBP6.79□□□□□ -1.32
VPS53-203ENST00000401468 CD81P60033 236 aa6.79□□□□□ -1.32
VPS53-203ENST00000401468 KIR3DS1Q14943 382 aa6.79□□□□□ -1.32
VPS53-203ENST00000401468 GUCA2BQ16661 112 aa6.79□□□□□ -1.32
VPS53-203ENST00000401468 HAGHQ16775 308 aa6.79□□□□□ -1.32
VPS53-203ENST00000401468 LCE5AQ5TCM9 118 aa6.79□□□□□ -1.32
VPS53-203ENST00000401468 TEX261Q6UWH6 196 aa6.79□□□□□ -1.32
VPS53-203ENST00000401468 LYPD1Q8N2G4 141 aa6.79□□□□□ -1.32
VPS53-203ENST00000401468 GBGT1Q8N5D6 347 aa6.79□□□□□ -1.32
VPS53-203ENST00000401468 DEFB125Q8N687 156 aa6.79□□□□□ -1.32
VPS53-203ENST00000401468 MRPL53Q96EL3 112 aaKnown RBP6.79□□□□□ -1.32
VPS53-203ENST00000401468 LYSTQ99698 3801 aa6.79□□□□□ -1.32
VPS53-203ENST00000401468 SLC50A1Q9BRV3 221 aa6.79□□□□□ -1.32
VPS53-203ENST00000401468 MAP6D1Q9H9H5 199 aa6.79□□□□□ -1.32
VPS53-203ENST00000401468 ARL2-SNX15V9GYD0 113 aa6.79□□□□□ -1.32
VPS53-203ENST00000401468 STARD9Q9P2P6 4700 aa6.78□□□□□ -1.32
VPS53-203ENST00000401468 IGKV3-7A0A075B6H7 116 aa6.78□□□□□ -1.32
VPS53-203ENST00000401468 DNASE2O00115 360 aaPredicted RBP6.78□□□□□ -1.32
VPS53-203ENST00000401468 OR7C2O60412 319 aa6.78□□□□□ -1.32
VPS53-203ENST00000401468 GCHFRP30047 84 aa6.78□□□□□ -1.32
VPS53-203ENST00000401468 SNRPD3P62318 126 aaKnown RBP6.78□□□□□ -1.32
VPS53-203ENST00000401468 RPL11P62913 178 aaKnown RBP6.78□□□□□ -1.32
VPS53-203ENST00000401468 UBE2L3P68036 154 aaKnown RBP6.78□□□□□ -1.32
VPS53-203ENST00000401468 PMS2P11Q13670 270 aa6.78□□□□□ -1.32
VPS53-203ENST00000401468 ALKAL2Q6UX46 152 aa6.78□□□□□ -1.32
VPS53-203ENST00000401468 GTSCR1Q86UQ5 136 aa6.78□□□□□ -1.32
VPS53-203ENST00000401468 ARL6IP6Q8N6S5 226 aa6.78□□□□□ -1.32
VPS53-203ENST00000401468 CLUHP3Q96NS8 147 aa6.78□□□□□ -1.32
VPS53-203ENST00000401468 TUBA4BQ9H853 241 aa6.78□□□□□ -1.32
VPS53-203ENST00000401468 ZMAT4Q9H898 229 aa6.78□□□□□ -1.32
VPS53-203ENST00000401468 TMEM167BQ9NRX6 74 aa6.78□□□□□ -1.32
VPS53-203ENST00000401468 MAP1LC3B2A6NCE7 125 aa6.77□□□□□ -1.33
VPS53-203ENST00000401468 HMGB3O15347 200 aaKnown RBP6.77□□□□□ -1.33
VPS53-203ENST00000401468 EIF3GO75821 320 aaKnown RBP eCLIP6.77□□□□□ -1.33
VPS53-203ENST00000401468 OR10J4P0C629 311 aa6.77□□□□□ -1.33
VPS53-203ENST00000401468 ID1P41134 155 aa6.77□□□□□ -1.33
VPS53-203ENST00000401468 PSG9Q00887 426 aa6.77□□□□□ -1.33
VPS53-203ENST00000401468 PSG3Q16557 428 aa6.77□□□□□ -1.33
VPS53-203ENST00000401468 FAM74A1Q5RGS3 127 aa6.77□□□□□ -1.33
VPS53-203ENST00000401468 LINC00322Q6ZN03 302 aaPredicted RBP6.77□□□□□ -1.33
VPS53-203ENST00000401468 ZNF680Q8NEM1 530 aa6.77□□□□□ -1.33
VPS53-203ENST00000401468 FAM213BQ8TBF2 198 aa6.77□□□□□ -1.33
VPS53-203ENST00000401468 C16orf92Q96LL3 132 aa6.77□□□□□ -1.33
VPS53-203ENST00000401468 TM2D3Q9BRN9 247 aa6.77□□□□□ -1.33
VPS53-203ENST00000401468 MAP1LC3BQ9GZQ8 125 aa6.77□□□□□ -1.33
VPS53-203ENST00000401468 A0A1W2PRE2 83 aa6.76□□□□□ -1.33
VPS53-203ENST00000401468 RBMY1BA6NDE4 496 aaKnown RBP6.76□□□□□ -1.33
VPS53-203ENST00000401468 RBMY1EA6NEQ0 496 aaKnown RBP6.76□□□□□ -1.33
VPS53-203ENST00000401468 OR11H12B2RN74 326 aa6.76□□□□□ -1.33
VPS53-203ENST00000401468 RBMY1DP0C7P1 496 aaKnown RBP6.76□□□□□ -1.33
VPS53-203ENST00000401468 ZNF688P0C7X2 276 aa6.76□□□□□ -1.33
VPS53-203ENST00000401468 TFPI2P48307 235 aa6.76□□□□□ -1.33
VPS53-203ENST00000401468 LRRC20Q8TCA0 184 aa6.76□□□□□ -1.33
VPS53-203ENST00000401468 SAV1Q9H4B6 383 aaPredicted RBP6.76□□□□□ -1.33
VPS53-203ENST00000401468 SRD5A3Q9H8P0 318 aa6.76□□□□□ -1.33
VPS53-203ENST00000401468 AP5S1Q9NUS5 200 aa6.76□□□□□ -1.33
VPS53-203ENST00000401468 UBQLN2Q9UHD9 624 aa6.76□□□□□ -1.33
VPS53-203ENST00000401468 PRELID1Q9Y255 219 aa6.76□□□□□ -1.33
VPS53-203ENST00000401468 A0A0J9YX75 114 aa6.75□□□□□ -1.33
VPS53-203ENST00000401468 C3orf84H3BNL1 204 aa6.75□□□□□ -1.33
VPS53-203ENST00000401468 HBE1P02100 147 aa6.75□□□□□ -1.33
VPS53-203ENST00000401468 HLA-DRB4P13762 266 aa6.75□□□□□ -1.33
VPS53-203ENST00000401468 FGF8P55075 233 aaPredicted RBP6.75□□□□□ -1.33
VPS53-203ENST00000401468 DEFB131AP59861 70 aa6.75□□□□□ -1.33
VPS53-203ENST00000401468 BLOC1S1P78537 153 aa6.75□□□□□ -1.33
VPS53-203ENST00000401468 IFITM2Q01629 132 aa6.75□□□□□ -1.33
VPS53-203ENST00000401468 PSMG4Q5JS54 123 aa6.75□□□□□ -1.33
VPS53-203ENST00000401468 FOXI2Q6ZQN5 318 aa6.75□□□□□ -1.33
VPS53-203ENST00000401468 CCDC28AQ8IWP9 274 aa6.75□□□□□ -1.33
VPS53-203ENST00000401468 RNF182Q8N6D2 247 aa6.75□□□□□ -1.33
VPS53-203ENST00000401468 SFT2D1Q8WV19 159 aa6.75□□□□□ -1.33
VPS53-203ENST00000401468 KRTAP9-3Q9BYQ3 159 aa6.75□□□□□ -1.33
VPS53-203ENST00000401468 NKX6-2Q9C056 277 aaPredicted RBP6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms