RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 BPIFA4PQ86YQ2 179 aa7.64□□□□□ -1.19
COL6A3-204ENST00000392003 ITLN2Q8WWU7 325 aaPredicted RBP7.64□□□□□ -1.19
COL6A3-204ENST00000392003 FAM168AQ92567 244 aa7.64□□□□□ -1.19
COL6A3-204ENST00000392003 NCBP2LA6PVI3 153 aaKnown RBP7.63□□□□□ -1.19
COL6A3-204ENST00000392003 NDUFS7O75251 213 aa7.63□□□□□ -1.19
COL6A3-204ENST00000392003 TCRAP04437 139 aa7.63□□□□□ -1.19
COL6A3-204ENST00000392003 KLF12Q9Y4X4 402 aa7.63□□□□□ -1.19
COL6A3-204ENST00000392003 PMCHP20382 165 aa7.63□□□□□ -1.19
COL6A3-204ENST00000392003 NUP35Q8NFH5 326 aa7.63□□□□□ -1.19
COL6A3-204ENST00000392003 TMEM14CQ9P0S9 112 aa7.63□□□□□ -1.19
COL6A3-204ENST00000392003 CD24P25063 80 aa7.62□□□□□ -1.19
COL6A3-204ENST00000392003 CAMPP49913 170 aa7.62□□□□□ -1.19
COL6A3-204ENST00000392003 WIPF2Q8TF74 440 aaPredicted RBP7.62□□□□□ -1.19
COL6A3-204ENST00000392003 MBD6Q96DN6 1003 aa7.62□□□□□ -1.19
COL6A3-204ENST00000392003 RPP21Q9H633 154 aaKnown RBP7.62□□□□□ -1.19
COL6A3-204ENST00000392003 HIGD1CA8MV81 97 aa7.62□□□□□ -1.19
COL6A3-204ENST00000392003 BMPR1BO00238 502 aa7.62□□□□□ -1.19
COL6A3-204ENST00000392003 HIST1H1AQ02539 215 aaPredicted RBP7.62□□□□□ -1.19
COL6A3-204ENST00000392003 GLMPQ8WWB7 406 aa7.62□□□□□ -1.19
COL6A3-204ENST00000392003 TMEM190Q8WZ59 177 aa7.62□□□□□ -1.19
COL6A3-204ENST00000392003 SPENQ96T58 3664 aaKnown RBP7.62□□□□□ -1.19
COL6A3-204ENST00000392003 IGLL1P15814 213 aa7.62□□□□□ -1.19
COL6A3-204ENST00000392003 MFAP4P55083 255 aa7.62□□□□□ -1.19
COL6A3-204ENST00000392003 GAGE5Q13069 117 aa7.62□□□□□ -1.19
COL6A3-204ENST00000392003 GAGE6Q13070 117 aa7.62□□□□□ -1.19
COL6A3-204ENST00000392003 ATP5L2Q7Z4Y8 100 aa7.62□□□□□ -1.19
COL6A3-204ENST00000392003 NPBQ8NG41 125 aa7.62□□□□□ -1.19
COL6A3-204ENST00000392003 KCNS1Q96KK3 526 aa7.62□□□□□ -1.19
COL6A3-204ENST00000392003 OOSP1A8MZH6 123 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 IGKV1-17P01599 117 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 IL4P05112 153 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 Q56UQ5 140 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 C11orf71Q6IPW1 123 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 PIMREGQ9BSJ6 248 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 ZNF492Q9P255 531 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 HSPB8Q9UJY1 196 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 K7EIM0 57 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 NDUFA3O95167 84 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 GPX1P07203 203 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 NTF3P20783 257 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 COL8A1P27658 744 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 EFNA4P52798 201 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 ASPHD1Q5U4P2 390 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 GOLT1AQ6ZVE7 132 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 CFHR4Q92496 578 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 BORCS7Q96B45 105 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 RNF125Q96EQ8 232 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 SHANK2-AS3Q9BTD1 123 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 ERG28Q9UKR5 140 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 ARHGAP32A7KAX9 2087 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 VMO1Q7Z5L0 202 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 PRNTQ86SH4 94 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 ARPC1AQ92747 370 aa7.61□□□□□ -1.19
COL6A3-204ENST00000392003 MRPL16Q9NX20 251 aaKnown RBP7.61□□□□□ -1.19
COL6A3-204ENST00000392003 SOX21Q9Y651 276 aaPredicted RBP7.61□□□□□ -1.19
COL6A3-204ENST00000392003 C7orf71A4D174 169 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 ODF3BA8MYP8 253 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 HSBP1O75506 76 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 LTAP01374 205 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 C3orf79P0CE67 100 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 FCGR2BP31994 310 aaPredicted RBP7.6□□□□□ -1.19
COL6A3-204ENST00000392003 HBBP68871 147 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 FAM162BQ5T6X4 162 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 MINOS1Q5TGZ0 78 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 AP1S3Q96PC3 154 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 PEF1Q9UBV8 284 aaKnown RBP7.6□□□□□ -1.19
COL6A3-204ENST00000392003 MINOS1-NBL1R4GNA1 71 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 H3BUT2 72 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 CT83Q5H943 113 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 KLF17Q5JT82 389 aaPredicted RBP7.6□□□□□ -1.19
COL6A3-204ENST00000392003 DTX2Q86UW9 622 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 EXOC3-AS1Q8N2X6 119 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 KIR3DL3Q8N743 410 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 MLST8Q9BVC4 326 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 C1QTNF4Q9BXJ3 329 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 C1RLQ9NZP8 487 aa7.6□□□□□ -1.19
COL6A3-204ENST00000392003 CSDC2Q9Y534 153 aaKnown RBP7.6□□□□□ -1.19
COL6A3-204ENST00000392003 C19orf84I3L1E1 186 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 ZNF324O75467 553 aaPredicted RBP7.59□□□□□ -1.19
COL6A3-204ENST00000392003 HLA-DRB1P01911 266 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 Q86TA4 180 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 AAMDCQ9H7C9 122 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 A0A087X0K7 114 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 A0A1W2PS18 150 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 H3BRN7 92 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 INSL3P51460 131 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 LYPD1Q8N2G4 141 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 FAM19A2Q8N3H0 131 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 PGLYRP4Q96LB8 373 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 S4R3C0 116 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 KALRNO60229 2985 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 TRBV19A0A075B6N1 114 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 CHEK1O14757 476 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 CSN1S1P47710 185 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 C5orf47Q569G3 176 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 RBPMS2Q6ZRY4 209 aaKnown RBP7.59□□□□□ -1.19
COL6A3-204ENST00000392003 C3orf56Q8N813 242 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 ZNF491Q8N8L2 437 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 C7orf69Q9H7B7 122 aa7.59□□□□□ -1.19
COL6A3-204ENST00000392003 C21orf62Q9NYP8 219 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms