RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 IGFL4Q6B9Z1 124 aa12.5□□□□□ -0.41
CKAP4-201ENST00000378026 LCNL1Q6ZST4 164 aa12.5□□□□□ -0.41
CKAP4-201ENST00000378026 NPIPB5A8MRT5 1133 aa12.5□□□□□ -0.41
CKAP4-201ENST00000378026 IGKV1-17P01599 117 aa12.5□□□□□ -0.41
CKAP4-201ENST00000378026 FTH1P19P0C7X4 201 aa12.5□□□□□ -0.41
CKAP4-201ENST00000378026 FOXC2Q99958 501 aa12.5□□□□□ -0.41
CKAP4-201ENST00000378026 TMEM14CQ9P0S9 112 aa12.5□□□□□ -0.41
CKAP4-201ENST00000378026 CNOT1A5YKK6 2376 aaKnown RBP12.5□□□□□ -0.41
CKAP4-201ENST00000378026 TRBV25-1A0A075B6N4 114 aa12.49□□□□□ -0.41
CKAP4-201ENST00000378026 SPAARA0A1B0GVQ0 90 aa12.49□□□□□ -0.41
CKAP4-201ENST00000378026 Q6AWC8 147 aa12.49□□□□□ -0.41
CKAP4-201ENST00000378026 GATD1Q8NB37 220 aa12.49□□□□□ -0.41
CKAP4-201ENST00000378026 TMEM160Q9NX00 188 aa12.49□□□□□ -0.41
CKAP4-201ENST00000378026 GATA1P15976 413 aaPredicted RBP12.49□□□□□ -0.41
CKAP4-201ENST00000378026 PPIFP30405 207 aaKnown RBP12.49□□□□□ -0.41
CKAP4-201ENST00000378026 CD300EQ496F6 205 aaPredicted RBP12.49□□□□□ -0.41
CKAP4-201ENST00000378026 ZC2HC1BQ5TFG8 222 aa12.49□□□□□ -0.41
CKAP4-201ENST00000378026 TEX36Q5VZQ5 186 aa12.49□□□□□ -0.41
CKAP4-201ENST00000378026 SIGLEC9Q9Y336 463 aa12.49□□□□□ -0.41
CKAP4-201ENST00000378026 AGRNO00468 2067 aa12.49□□□□□ -0.41
CKAP4-201ENST00000378026 TNRC18O15417 2968 aaPredicted RBP12.49□□□□□ -0.41
CKAP4-201ENST00000378026 NDUFB3O43676 98 aa12.48□□□□□ -0.41
CKAP4-201ENST00000378026 MC5RP33032 325 aa12.48□□□□□ -0.41
CKAP4-201ENST00000378026 PAX8Q06710 450 aa12.48□□□□□ -0.41
CKAP4-201ENST00000378026 KLF17Q5JT82 389 aaPredicted RBP12.48□□□□□ -0.41
CKAP4-201ENST00000378026 ZNF562Q6V9R5 426 aa12.48□□□□□ -0.41
CKAP4-201ENST00000378026 U3KQK5 164 aa12.48□□□□□ -0.41
CKAP4-201ENST00000378026 IGFBPL1Q8WX77 278 aa12.48□□□□□ -0.41
CKAP4-201ENST00000378026 WNK2Q9Y3S1 2297 aa12.48□□□□□ -0.41
CKAP4-201ENST00000378026 EGR2P11161 476 aaPredicted RBP12.48□□□□□ -0.41
CKAP4-201ENST00000378026 INSL3P51460 131 aa12.48□□□□□ -0.41
CKAP4-201ENST00000378026 ATP5G2Q06055 141 aa12.48□□□□□ -0.41
CKAP4-201ENST00000378026 SHANK2-AS3Q9BTD1 123 aa12.48□□□□□ -0.41
CKAP4-201ENST00000378026 HHLA3Q9XRX5 114 aa12.48□□□□□ -0.41
CKAP4-201ENST00000378026 CNIH1O95406 144 aa12.47□□□□□ -0.41
CKAP4-201ENST00000378026 ODF1Q14990 250 aa12.47□□□□□ -0.41
CKAP4-201ENST00000378026 PPP1R27Q86WC6 154 aa12.47□□□□□ -0.41
CKAP4-201ENST00000378026 C1orf210Q8IVY1 113 aa12.47□□□□□ -0.41
CKAP4-201ENST00000378026 EP300Q09472 2414 aaPredicted RBP12.47□□□□□ -0.41
CKAP4-201ENST00000378026 C19orf67A6NJJ6 358 aa12.47□□□□□ -0.41
CKAP4-201ENST00000378026 TEX22C9J3V5 150 aa12.47□□□□□ -0.41
CKAP4-201ENST00000378026 C16orf97H3BN30 126 aa12.47□□□□□ -0.41
CKAP4-201ENST00000378026 SPAG8Q99932 426 aaPredicted RBP12.47□□□□□ -0.41
CKAP4-201ENST00000378026 SPANXB1Q9NS25 103 aaPredicted RBP12.47□□□□□ -0.41
CKAP4-201ENST00000378026 IGKCP01834 107 aa12.46□□□□□ -0.41
CKAP4-201ENST00000378026 CCDC144NLQ6NUI1 221 aa12.46□□□□□ -0.41
CKAP4-201ENST00000378026 PRSS33Q8NF86 280 aa12.46□□□□□ -0.41
CKAP4-201ENST00000378026 ZNF479Q96JC4 524 aa12.46□□□□□ -0.41
CKAP4-201ENST00000378026 AAMDCQ9H7C9 122 aa12.46□□□□□ -0.41
CKAP4-201ENST00000378026 TRAV40A0A0B4J280 105 aa12.46□□□□□ -0.41
CKAP4-201ENST00000378026 ORM1P02763 201 aa12.46□□□□□ -0.41
CKAP4-201ENST00000378026 CEND1Q8N111 149 aa12.46□□□□□ -0.41
CKAP4-201ENST00000378026 PHLDA1Q8WV24 401 aaPredicted RBP12.46□□□□□ -0.41
CKAP4-201ENST00000378026 ATP6V0BQ99437 205 aa12.46□□□□□ -0.41
CKAP4-201ENST00000378026 MAP1LC3AQ9H492 121 aa12.46□□□□□ -0.41
CKAP4-201ENST00000378026 CTSZQ9UBR2 303 aa12.46□□□□□ -0.41
CKAP4-201ENST00000378026 A0A1B0GV72 72 aa12.46□□□□□ -0.42
CKAP4-201ENST00000378026 TMEM8BA6NDV4 472 aa12.46□□□□□ -0.42
CKAP4-201ENST00000378026 IGLL5B9A064 214 aa12.46□□□□□ -0.42
CKAP4-201ENST00000378026 I3L2K1 104 aa12.46□□□□□ -0.42
CKAP4-201ENST00000378026 FAM169BQ8N8A8 192 aa12.46□□□□□ -0.42
CKAP4-201ENST00000378026 RNF125Q96EQ8 232 aa12.46□□□□□ -0.42
CKAP4-201ENST00000378026 IGHV3OR16-8A0A075B7F1 116 aa12.45□□□□□ -0.42
CKAP4-201ENST00000378026 CD40P25942 277 aa12.45□□□□□ -0.42
CKAP4-201ENST00000378026 RAB9AP51151 201 aa12.45□□□□□ -0.42
CKAP4-201ENST00000378026 ZNF80P51504 273 aaPredicted RBP12.45□□□□□ -0.42
CKAP4-201ENST00000378026 MAPKAPK5-AS1Q8N8E1 139 aa12.45□□□□□ -0.42
CKAP4-201ENST00000378026 H3BRN7 92 aa12.45□□□□□ -0.42
CKAP4-201ENST00000378026 COX7A1P24310 79 aa12.45□□□□□ -0.42
CKAP4-201ENST00000378026 ZNF491Q8N8L2 437 aa12.45□□□□□ -0.42
CKAP4-201ENST00000378026 TMEM158Q8WZ71 300 aa12.45□□□□□ -0.42
CKAP4-201ENST00000378026 J3QR89 54 aa12.44□□□□□ -0.42
CKAP4-201ENST00000378026 FOXI2Q6ZQN5 318 aa12.44□□□□□ -0.42
CKAP4-201ENST00000378026 TRBV6-1A0A0K0K1D8 114 aa12.44□□□□□ -0.42
CKAP4-201ENST00000378026 IGHV1-8P0DP01 117 aa12.44□□□□□ -0.42
CKAP4-201ENST00000378026 HLA-DMBP28068 263 aa12.44□□□□□ -0.42
CKAP4-201ENST00000378026 TRAV17A0A0B4J275 112 aa12.43□□□□□ -0.42
CKAP4-201ENST00000378026 LOXP28300 417 aaPredicted RBP12.43□□□□□ -0.42
CKAP4-201ENST00000378026 SFTA2Q6UW10 78 aa12.43□□□□□ -0.42
CKAP4-201ENST00000378026 IGHV3-23P01764 117 aa12.43□□□□□ -0.42
CKAP4-201ENST00000378026 CKS1BP61024 79 aa12.43□□□□□ -0.42
CKAP4-201ENST00000378026 PVRIGQ6DKI7 326 aa12.43□□□□□ -0.42
CKAP4-201ENST00000378026 HIST1H4GQ99525 98 aa12.43□□□□□ -0.42
CKAP4-201ENST00000378026 C17orf100A8MU93 164 aa12.42□□□□□ -0.42
CKAP4-201ENST00000378026 E9PLD3 99 aa12.42□□□□□ -0.42
CKAP4-201ENST00000378026 TNFRSF6BO95407 300 aa12.42□□□□□ -0.42
CKAP4-201ENST00000378026 CD59P13987 128 aa12.42□□□□□ -0.42
CKAP4-201ENST00000378026 LINC00311Q8N616 119 aa12.42□□□□□ -0.42
CKAP4-201ENST00000378026 MRPL35Q9NZE8 188 aaKnown RBP12.42□□□□□ -0.42
CKAP4-201ENST00000378026 IGHV3-35A0A0C4DH35 117 aa12.42□□□□□ -0.42
CKAP4-201ENST00000378026 F8W1H4 67 aa12.42□□□□□ -0.42
CKAP4-201ENST00000378026 K7EIM0 57 aa12.42□□□□□ -0.42
CKAP4-201ENST00000378026 DPM2O94777 84 aa12.42□□□□□ -0.42
CKAP4-201ENST00000378026 NDUFA3O95167 84 aa12.42□□□□□ -0.42
CKAP4-201ENST00000378026 BMI1P35226 326 aa12.42□□□□□ -0.42
CKAP4-201ENST00000378026 CEACAM3P40198 252 aa12.42□□□□□ -0.42
CKAP4-201ENST00000378026 C12orf74Q32Q52 190 aa12.42□□□□□ -0.42
CKAP4-201ENST00000378026 HIGD1BQ9P298 99 aa12.42□□□□□ -0.42
CKAP4-201ENST00000378026 SPTBN2O15020 2390 aa12.42□□□□□ -0.42
CKAP4-201ENST00000378026 K7EM74 188 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms