RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 KDM6AO15550 1401 aaPredicted RBP0.51□□□□□ -2.33
VPS13A-206ENST00000376646 MGAMO43451 1857 aa0.51□□□□□ -2.33
VPS13A-206ENST00000376646 FBN2P35556 2912 aa0.51□□□□□ -2.33
VPS13A-206ENST00000376646 IGHV1-58A0A0C4DH39 117 aa0.51□□□□□ -2.33
VPS13A-206ENST00000376646 KLF7O75840 302 aaPredicted RBP0.51□□□□□ -2.33
VPS13A-206ENST00000376646 SERPINB1P30740 379 aa0.51□□□□□ -2.33
VPS13A-206ENST00000376646 LTC4SQ16873 150 aa0.51□□□□□ -2.33
VPS13A-206ENST00000376646 C3orf33Q6P1S2 294 aa0.51□□□□□ -2.33
VPS13A-206ENST00000376646 GRINAQ7Z429 371 aa0.51□□□□□ -2.33
VPS13A-206ENST00000376646 GKN2Q86XP6 184 aa0.51□□□□□ -2.33
VPS13A-206ENST00000376646 STX19Q8N4C7 294 aa0.51□□□□□ -2.33
VPS13A-206ENST00000376646 CACYBPQ9HB71 228 aaKnown RBP0.51□□□□□ -2.33
VPS13A-206ENST00000376646 ASB4Q9Y574 426 aa0.51□□□□□ -2.33
VPS13A-206ENST00000376646 NCAPD3P42695 1498 aa0.51□□□□□ -2.33
VPS13A-206ENST00000376646 CAMSAP2Q08AD1 1489 aa0.51□□□□□ -2.33
VPS13A-206ENST00000376646 ALPK3Q96L96 1907 aa0.51□□□□□ -2.33
VPS13A-206ENST00000376646 FAT4Q6V0I7 4981 aa0.51□□□□□ -2.33
VPS13A-206ENST00000376646 PEAK1Q9H792 1746 aa0.51□□□□□ -2.33
VPS13A-206ENST00000376646 USP9YO00507 2555 aaPredicted RBP0.51□□□□□ -2.33
VPS13A-206ENST00000376646 OR2T8A6NH00 312 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 F8W1H4 67 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 RER1O15258 196 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 HIST1H2BKO60814 126 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 HIST1H2BJP06899 126 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 CXCL8P10145 99 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 FKBP1CQ5VVH2 108 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 TMEM14EPQ6UXP3 125 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 LINC00322Q6ZN03 302 aaPredicted RBP0.5□□□□□ -2.33
VPS13A-206ENST00000376646 DYDC1Q8WWB3 177 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 HYLS1Q96M11 299 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 BIN3Q9NQY0 253 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 MED11Q9P086 117 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 TMEM14CQ9P0S9 112 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 OR52A1Q9UKL2 312 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 RNF11Q9Y3C5 154 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 SYNMO15061 1565 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 WDFY4Q6ZS81 3184 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 HYDINQ4G0P3 5121 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 UTP20O75691 2785 aaKnown RBP0.5□□□□□ -2.33
VPS13A-206ENST00000376646 KDM5AP29375 1690 aaKnown RBP0.5□□□□□ -2.33
VPS13A-206ENST00000376646 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.5□□□□□ -2.33
VPS13A-206ENST00000376646 NUPR1O60356 82 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 IFNA4P05014 189 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 NEFHP12036 1026 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 IDO1P14902 403 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 PSG9Q00887 426 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 EIF3IQ13347 325 aaKnown RBP0.5□□□□□ -2.33
VPS13A-206ENST00000376646 RTL8BQ17RB0 113 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 C1orf140Q5VVS0 124 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 KRTAP26-1Q6PEX3 210 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 CROCCP2Q86T23 111 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 TEN1Q86WV5 123 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 FAM24BQ8N5W8 94 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 NUP35Q8NFH5 326 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 PLEKHB2Q96CS7 222 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 ZC2HC1AQ96GY0 325 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 CARD19Q96LW7 228 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 AMELYQ99218 206 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 RTL8AQ9BWD3 113 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 MAP1LC3BQ9GZQ8 125 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 IL20Q9NYY1 176 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 MYLKQ15746 1914 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 TRPM1Q7Z4N2 1603 aa0.5□□□□□ -2.33
VPS13A-206ENST00000376646 PIK3C2AO00443 1686 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 UNC13CQ8NB66 2214 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 CECR2Q9BXF3 1484 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 SRCAPQ6ZRS2 3230 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 H3BRM9 83 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 NCR3O14931 201 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 S100A5P33763 92 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 HBBP68871 147 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 PRB3Q04118 309 aaPredicted RBP0.49□□□□□ -2.33
VPS13A-206ENST00000376646 OR5AS1Q8N127 324 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 LRRC18Q8N456 261 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 GVINP1Q7Z2Y8 2422 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 EML5Q05BV3 1969 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 FRMPD1Q5SYB0 1578 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 TENM3Q9P273 2699 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 A0A087WSZ3 146 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 TRAV5A0A0B4J249 113 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 hDV103S1A0JD37 113 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 C9orf170A2RU37 121 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 C5orf67F2Z3F1 127 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 SNRNP200O75643 2136 aaKnown RBP0.49□□□□□ -2.33
VPS13A-206ENST00000376646 CST7O76096 145 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 COX7CP15954 63 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 DCUN1D2Q6PH85 259 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 HAGHLQ6PII5 290 aaPredicted RBP0.49□□□□□ -2.33
VPS13A-206ENST00000376646 ARPINQ7Z6K5 226 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 ZNF431Q8TF32 576 aaPredicted RBP0.49□□□□□ -2.33
VPS13A-206ENST00000376646 BORCS8Q96FH0 119 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 KRTAP2-1Q9BYU5 128 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 BOLA2Q9H3K6 86 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 TMEM138Q9NPI0 162 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 EP300Q09472 2414 aaPredicted RBP0.49□□□□□ -2.33
VPS13A-206ENST00000376646 SIP14410 1827 aa0.49□□□□□ -2.33
VPS13A-206ENST00000376646 PHRF1Q9P1Y6 1649 aaKnown RBP0.48□□□□□ -2.33
VPS13A-206ENST00000376646 ROCK1Q13464 1354 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 PTPRFP10586 1907 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 CFAP46Q8IYW2 2715 aa0.48□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms