RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 C9orf139Q6ZV77 190 aa11.22□□□□□ -0.61
HMGA1-203ENST00000374116 C18orf32Q8TCD1 76 aa11.22□□□□□ -0.61
HMGA1-203ENST00000374116 TRGV9Q99603 122 aa11.22□□□□□ -0.61
HMGA1-203ENST00000374116 DPM3Q9P2X0 92 aa11.22□□□□□ -0.61
HMGA1-203ENST00000374116 C2orf70A6NJV1 201 aa11.21□□□□□ -0.61
HMGA1-203ENST00000374116 GGTLC3B5MD39 225 aa11.21□□□□□ -0.61
HMGA1-203ENST00000374116 IGHV4-59P01825 116 aa11.21□□□□□ -0.61
HMGA1-203ENST00000374116 UBE2L3P68036 154 aaKnown RBP11.21□□□□□ -0.61
HMGA1-203ENST00000374116 MAJINQ3KP22 176 aa11.21□□□□□ -0.61
HMGA1-203ENST00000374116 PATE2Q6UY27 113 aa11.21□□□□□ -0.61
HMGA1-203ENST00000374116 PRIMA1Q86XR5 153 aa11.21□□□□□ -0.61
HMGA1-203ENST00000374116 TMEM116Q8NCL8 245 aa11.21□□□□□ -0.61
HMGA1-203ENST00000374116 ZNF355PQ9NSJ1 428 aa11.21□□□□□ -0.61
HMGA1-203ENST00000374116 MRPL36Q9P0J6 103 aaKnown RBP11.21□□□□□ -0.61
HMGA1-203ENST00000374116 TRAV5A0A0B4J249 113 aa11.21□□□□□ -0.62
HMGA1-203ENST00000374116 IGHV3-48P01763 117 aa11.21□□□□□ -0.62
HMGA1-203ENST00000374116 MFAP2P55001 183 aa11.21□□□□□ -0.62
HMGA1-203ENST00000374116 LY6EQ16553 131 aa11.21□□□□□ -0.62
HMGA1-203ENST00000374116 CENPWQ5EE01 88 aa11.21□□□□□ -0.62
HMGA1-203ENST00000374116 MORN5Q5VZ52 161 aa11.21□□□□□ -0.62
HMGA1-203ENST00000374116 CFHR4Q92496 578 aa11.21□□□□□ -0.62
HMGA1-203ENST00000374116 SRSF8Q9BRL6 282 aaKnown RBP11.21□□□□□ -0.62
HMGA1-203ENST00000374116 PAXXQ9BUH6 204 aa11.21□□□□□ -0.62
HMGA1-203ENST00000374116 F11RQ9Y624 299 aaKnown RBP11.21□□□□□ -0.62
HMGA1-203ENST00000374116 IZUMO1RA6ND01 250 aa11.2□□□□□ -0.62
HMGA1-203ENST00000374116 TEX22C9J3V5 150 aa11.2□□□□□ -0.62
HMGA1-203ENST00000374116 H3BUX3 64 aa11.2□□□□□ -0.62
HMGA1-203ENST00000374116 APCSP02743 223 aa11.2□□□□□ -0.62
HMGA1-203ENST00000374116 CEACAM3P40198 252 aa11.2□□□□□ -0.62
HMGA1-203ENST00000374116 FAM162BQ5T6X4 162 aa11.2□□□□□ -0.62
HMGA1-203ENST00000374116 LCN12Q6JVE5 192 aa11.2□□□□□ -0.62
HMGA1-203ENST00000374116 EBLN2Q6P2I7 272 aa11.2□□□□□ -0.62
HMGA1-203ENST00000374116 Q6YL49 198 aa11.2□□□□□ -0.62
HMGA1-203ENST00000374116 STXBP6Q8NFX7 210 aa11.2□□□□□ -0.62
HMGA1-203ENST00000374116 FBXL15Q9H469 300 aa11.2□□□□□ -0.62
HMGA1-203ENST00000374116 RPH3ALQ9UNE2 315 aa11.2□□□□□ -0.62
HMGA1-203ENST00000374116 RNF24Q9Y225 148 aa11.2□□□□□ -0.62
HMGA1-203ENST00000374116 PLXNB1O43157 2135 aa11.2□□□□□ -0.62
HMGA1-203ENST00000374116 DNAJC9-AS1A6NH13 148 aa11.19□□□□□ -0.62
HMGA1-203ENST00000374116 OR2J3O76001 311 aa11.19□□□□□ -0.62
HMGA1-203ENST00000374116 KRTAP21-3Q3LHN1 58 aa11.19□□□□□ -0.62
HMGA1-203ENST00000374116 TIGITQ495A1 244 aa11.19□□□□□ -0.62
HMGA1-203ENST00000374116 MINOS1Q5TGZ0 78 aa11.19□□□□□ -0.62
HMGA1-203ENST00000374116 PEF1Q9UBV8 284 aaKnown RBP11.19□□□□□ -0.62
HMGA1-203ENST00000374116 MINOS1-NBL1R4GNA1 71 aa11.19□□□□□ -0.62
HMGA1-203ENST00000374116 GAGE12BA1L429 117 aa11.19□□□□□ -0.62
HMGA1-203ENST00000374116 TIMM23O14925 209 aa11.19□□□□□ -0.62
HMGA1-203ENST00000374116 IGLC1P0CG04 106 aa11.19□□□□□ -0.62
HMGA1-203ENST00000374116 MPV17L2Q567V2 206 aa11.19□□□□□ -0.62
HMGA1-203ENST00000374116 LINC00305Q7Z4B0 112 aa11.19□□□□□ -0.62
HMGA1-203ENST00000374116 TMEM219Q86XT9 240 aa11.19□□□□□ -0.62
HMGA1-203ENST00000374116 ATOH7Q8N100 152 aa11.19□□□□□ -0.62
HMGA1-203ENST00000374116 FAM19A2Q8N3H0 131 aa11.19□□□□□ -0.62
HMGA1-203ENST00000374116 PIFOQ8TCI5 191 aa11.19□□□□□ -0.62
HMGA1-203ENST00000374116 ZNF418Q8TF45 676 aaPredicted RBP11.19□□□□□ -0.62
HMGA1-203ENST00000374116 SRSF12Q8WXF0 261 aaKnown RBP11.19□□□□□ -0.62
HMGA1-203ENST00000374116 MEGF9Q9H1U4 602 aa11.19□□□□□ -0.62
HMGA1-203ENST00000374116 OR2T8A6NH00 312 aa11.18□□□□□ -0.62
HMGA1-203ENST00000374116 HSBP1O75506 76 aa11.18□□□□□ -0.62
HMGA1-203ENST00000374116 PSG9Q00887 426 aa11.18□□□□□ -0.62
HMGA1-203ENST00000374116 PLGLAQ15195 96 aa11.18□□□□□ -0.62
HMGA1-203ENST00000374116 MRPL54Q6P161 138 aaKnown RBP11.18□□□□□ -0.62
HMGA1-203ENST00000374116 PYYP10082 97 aa11.17□□□□□ -0.62
HMGA1-203ENST00000374116 NTF3P20783 257 aa11.17□□□□□ -0.62
HMGA1-203ENST00000374116 HILS1P60008 231 aa11.17□□□□□ -0.62
HMGA1-203ENST00000374116 PLP1P60201 277 aa11.17□□□□□ -0.62
HMGA1-203ENST00000374116 SCGB2A2Q13296 93 aa11.17□□□□□ -0.62
HMGA1-203ENST00000374116 KIAA1644Q3SXP7 199 aa11.17□□□□□ -0.62
HMGA1-203ENST00000374116 AMMECR1LQ6DCA0 310 aa11.17□□□□□ -0.62
HMGA1-203ENST00000374116 UFSP1Q6NVU6 142 aa11.17□□□□□ -0.62
HMGA1-203ENST00000374116 SLC25A34Q6PIV7 304 aa11.17□□□□□ -0.62
HMGA1-203ENST00000374116 NPBQ8NG41 125 aa11.17□□□□□ -0.62
HMGA1-203ENST00000374116 FXYD5Q96DB9 178 aa11.17□□□□□ -0.62
HMGA1-203ENST00000374116 IGF2BP2-AS1Q96M15 143 aa11.17□□□□□ -0.62
HMGA1-203ENST00000374116 TMEM70Q9BUB7 260 aa11.17□□□□□ -0.62
HMGA1-203ENST00000374116 MOSP00540 346 aa11.16□□□□□ -0.62
HMGA1-203ENST00000374116 APELAP0DMC3 54 aa11.16□□□□□ -0.62
HMGA1-203ENST00000374116 SCGB1A1P11684 91 aa11.16□□□□□ -0.62
HMGA1-203ENST00000374116 ORM2P19652 201 aa11.16□□□□□ -0.62
HMGA1-203ENST00000374116 Q56UQ5 140 aa11.16□□□□□ -0.62
HMGA1-203ENST00000374116 ZNF329Q86UD4 541 aa11.16□□□□□ -0.62
HMGA1-203ENST00000374116 OR1B1Q8NGR6 318 aa11.16□□□□□ -0.62
HMGA1-203ENST00000374116 G3V4G9 280 aa11.16□□□□□ -0.62
HMGA1-203ENST00000374116 M0R2Z0 102 aa11.16□□□□□ -0.62
HMGA1-203ENST00000374116 NBR2O15453 112 aa11.16□□□□□ -0.62
HMGA1-203ENST00000374116 NDUFA3O95167 84 aa11.16□□□□□ -0.62
HMGA1-203ENST00000374116 CNIH1O95406 144 aa11.16□□□□□ -0.62
HMGA1-203ENST00000374116 IGLV2-8P01709 118 aa11.16□□□□□ -0.62
HMGA1-203ENST00000374116 HIST1H1AQ02539 215 aaPredicted RBP11.16□□□□□ -0.62
HMGA1-203ENST00000374116 MS4A6AQ9H2W1 248 aa11.16□□□□□ -0.62
HMGA1-203ENST00000374116 OOSP1A8MZH6 123 aa11.15□□□□□ -0.62
HMGA1-203ENST00000374116 NUDT3O95989 172 aa11.15□□□□□ -0.62
HMGA1-203ENST00000374116 BMI1P35226 326 aa11.15□□□□□ -0.62
HMGA1-203ENST00000374116 HES1Q14469 280 aa11.15□□□□□ -0.62
HMGA1-203ENST00000374116 FAM231DQ6ZW35 169 aa11.15□□□□□ -0.62
HMGA1-203ENST00000374116 PMCHL2Q9BQD1 86 aa11.15□□□□□ -0.62
HMGA1-203ENST00000374116 ZNF331Q9NQX6 463 aaPredicted RBP11.15□□□□□ -0.62
HMGA1-203ENST00000374116 FBN1P35555 2871 aaKnown RBP11.14□□□□□ -0.63
HMGA1-203ENST00000374116 MUC21A0A0G2JKD1 596 aa11.14□□□□□ -0.63
HMGA1-203ENST00000374116 MUC21A0A140T8X8 626 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms