RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 ARMS2P0C7Q2 107 aa12.52□□□□□ -0.41
COL5A1-201ENST00000371817 GAS1P54826 345 aa12.52□□□□□ -0.41
COL5A1-201ENST00000371817 F8VRH5 84 aa12.51□□□□□ -0.41
COL5A1-201ENST00000371817 TRPT1Q86TN4 253 aaKnown RBP12.51□□□□□ -0.41
COL5A1-201ENST00000371817 TMEM75Q8N9X5 138 aa12.51□□□□□ -0.41
COL5A1-201ENST00000371817 SMIM10L1P0DMW3 83 aa12.51□□□□□ -0.41
COL5A1-201ENST00000371817 NTN5Q8WTR8 489 aaPredicted RBP12.51□□□□□ -0.41
COL5A1-201ENST00000371817 SMIM10Q96HG1 83 aa12.51□□□□□ -0.41
COL5A1-201ENST00000371817 C1orf162Q8NEQ5 155 aaPredicted RBP12.51□□□□□ -0.41
COL5A1-201ENST00000371817 PRB4P10163 310 aaPredicted RBP12.51□□□□□ -0.41
COL5A1-201ENST00000371817 Q8TAT8 98 aa12.51□□□□□ -0.41
COL5A1-201ENST00000371817 NHSL1Q5SYE7 1610 aa12.51□□□□□ -0.41
COL5A1-201ENST00000371817 IGKV1D-43A0A0B4J1Z2 117 aa12.5□□□□□ -0.41
COL5A1-201ENST00000371817 PSG7Q13046 419 aa12.5□□□□□ -0.41
COL5A1-201ENST00000371817 PDE6HQ13956 83 aa12.5□□□□□ -0.41
COL5A1-201ENST00000371817 TRGV1A0A0A0MS02 117 aa12.5□□□□□ -0.41
COL5A1-201ENST00000371817 PRSS47A8MTI9 375 aa12.5□□□□□ -0.41
COL5A1-201ENST00000371817 HGFACQ04756 655 aa12.5□□□□□ -0.41
COL5A1-201ENST00000371817 PFN1P07737 140 aaKnown RBP12.5□□□□□ -0.41
COL5A1-201ENST00000371817 CECR9P0C854 216 aa12.5□□□□□ -0.41
COL5A1-201ENST00000371817 DEFB125Q8N687 156 aa12.5□□□□□ -0.41
COL5A1-201ENST00000371817 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.5□□□□□ -0.41
COL5A1-201ENST00000371817 CSPG4Q6UVK1 2322 aa12.5□□□□□ -0.41
COL5A1-201ENST00000371817 GFI1Q99684 422 aa12.5□□□□□ -0.41
COL5A1-201ENST00000371817 C15orf32Q32M92 178 aa12.5□□□□□ -0.41
COL5A1-201ENST00000371817 FOXI2Q6ZQN5 318 aa12.5□□□□□ -0.41
COL5A1-201ENST00000371817 IGKV1D-8A0A087WSZ0 117 aa12.49□□□□□ -0.41
COL5A1-201ENST00000371817 HLA-DRB4P13762 266 aa12.49□□□□□ -0.41
COL5A1-201ENST00000371817 HLA-DRB4X5D2U9 266 aa12.49□□□□□ -0.41
COL5A1-201ENST00000371817 IGLC7A0M8Q6 106 aa12.49□□□□□ -0.41
COL5A1-201ENST00000371817 Q8N8P6 123 aa12.49□□□□□ -0.41
COL5A1-201ENST00000371817 C4orf51C9J302 202 aa12.49□□□□□ -0.41
COL5A1-201ENST00000371817 SH2D6Q7Z4S9 175 aa12.49□□□□□ -0.41
COL5A1-201ENST00000371817 SMIM27A0A1W2PRY6 76 aa12.49□□□□□ -0.41
COL5A1-201ENST00000371817 A0A087WWL8 130 aa12.49□□□□□ -0.41
COL5A1-201ENST00000371817 PRSS46E5RG02 174 aa12.49□□□□□ -0.41
COL5A1-201ENST00000371817 IGKV1-9A0A0C4DH69 117 aa12.48□□□□□ -0.41
COL5A1-201ENST00000371817 KIR2DL5BA0A0G2JN68 375 aa12.48□□□□□ -0.41
COL5A1-201ENST00000371817 KIR2DL5BA0A0G2JPC4 375 aa12.48□□□□□ -0.41
COL5A1-201ENST00000371817 KIR2DL5AQ8N109 375 aa12.48□□□□□ -0.41
COL5A1-201ENST00000371817 SCRT2Q9NQ03 307 aa12.48□□□□□ -0.41
COL5A1-201ENST00000371817 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.48□□□□□ -0.41
COL5A1-201ENST00000371817 LINC00114Q6XXX2 140 aa12.48□□□□□ -0.41
COL5A1-201ENST00000371817 Q86TA4 180 aa12.48□□□□□ -0.41
COL5A1-201ENST00000371817 CHKB-CPT1BH3BT56 60 aa12.48□□□□□ -0.41
COL5A1-201ENST00000371817 C2orf66Q6UXQ4 117 aa12.48□□□□□ -0.41
COL5A1-201ENST00000371817 NTF4P34130 210 aa12.48□□□□□ -0.41
COL5A1-201ENST00000371817 NDUFS5O43920 106 aa12.48□□□□□ -0.41
COL5A1-201ENST00000371817 C2orf16Q68DN1 1984 aa12.48□□□□□ -0.41
COL5A1-201ENST00000371817 BAALC-AS2P0C853 105 aa12.47□□□□□ -0.41
COL5A1-201ENST00000371817 UCNP55089 124 aa12.47□□□□□ -0.41
COL5A1-201ENST00000371817 TRBV7-1A0A0A6YYK4 115 aa12.47□□□□□ -0.41
COL5A1-201ENST00000371817 RNASE8Q8TDE3 154 aaKnown RBP12.47□□□□□ -0.41
COL5A1-201ENST00000371817 COX6A1P12074 109 aa12.47□□□□□ -0.41
COL5A1-201ENST00000371817 TEN1Q86WV5 123 aa12.47□□□□□ -0.41
COL5A1-201ENST00000371817 SIGLEC8Q9NYZ4 499 aa12.47□□□□□ -0.41
COL5A1-201ENST00000371817 I3L3M4 83 aa12.47□□□□□ -0.41
COL5A1-201ENST00000371817 FAM201AQ5SY85 155 aa12.47□□□□□ -0.41
COL5A1-201ENST00000371817 C9JQL5 133 aa12.47□□□□□ -0.41
COL5A1-201ENST00000371817 PFN2P35080 140 aa12.47□□□□□ -0.41
COL5A1-201ENST00000371817 VDAC2P45880 294 aaPredicted RBP12.47□□□□□ -0.41
COL5A1-201ENST00000371817 SLC22A18ASQ8N1D0 253 aa12.46□□□□□ -0.41
COL5A1-201ENST00000371817 WBP1Q96G27 269 aa12.46□□□□□ -0.41
COL5A1-201ENST00000371817 RHODO00212 210 aa12.46□□□□□ -0.41
COL5A1-201ENST00000371817 SPSB3Q6PJ21 355 aa12.46□□□□□ -0.41
COL5A1-201ENST00000371817 COLCA1Q6ZS62 124 aa12.46□□□□□ -0.41
COL5A1-201ENST00000371817 C9orf139Q6ZV77 190 aa12.46□□□□□ -0.41
COL5A1-201ENST00000371817 MRPL35Q9NZE8 188 aaKnown RBP12.46□□□□□ -0.41
COL5A1-201ENST00000371817 A0A0B4J2C4 111 aa12.46□□□□□ -0.41
COL5A1-201ENST00000371817 G3V4G9 280 aa12.46□□□□□ -0.41
COL5A1-201ENST00000371817 COX6B1P14854 86 aa12.46□□□□□ -0.41
COL5A1-201ENST00000371817 BSPH1Q075Z2 132 aa12.46□□□□□ -0.41
COL5A1-201ENST00000371817 LINC01545Q5VT33 79 aa12.46□□□□□ -0.41
COL5A1-201ENST00000371817 SAP30O75446 220 aa12.46□□□□□ -0.42
COL5A1-201ENST00000371817 ORMDL1Q9P0S3 153 aa12.46□□□□□ -0.42
COL5A1-201ENST00000371817 PRB1P04280 392 aa12.46□□□□□ -0.42
COL5A1-201ENST00000371817 IL17RELQ6ZVW7 336 aa12.46□□□□□ -0.42
COL5A1-201ENST00000371817 NKAPP1Q8N9T2 125 aa12.46□□□□□ -0.42
COL5A1-201ENST00000371817 LINC00479Q96M42 142 aa12.46□□□□□ -0.42
COL5A1-201ENST00000371817 NDUFA12Q9UI09 145 aa12.46□□□□□ -0.42
COL5A1-201ENST00000371817 U3KQE9 123 aa12.46□□□□□ -0.42
COL5A1-201ENST00000371817 NUP210Q8TEM1 1887 aaPredicted RBP12.46□□□□□ -0.42
COL5A1-201ENST00000371817 NEU4Q8WWR8 484 aaPredicted RBP12.46□□□□□ -0.42
COL5A1-201ENST00000371817 CCL3L1P16619 93 aa12.45□□□□□ -0.42
COL5A1-201ENST00000371817 ATP5G1P05496 136 aa12.45□□□□□ -0.42
COL5A1-201ENST00000371817 PSMB8P28062 276 aa12.45□□□□□ -0.42
COL5A1-201ENST00000371817 KLF5Q13887 457 aaPredicted RBP12.45□□□□□ -0.42
COL5A1-201ENST00000371817 ZNF492Q9P255 531 aa12.45□□□□□ -0.42
COL5A1-201ENST00000371817 RIF1Q5UIP0 2472 aaKnown RBP12.45□□□□□ -0.42
COL5A1-201ENST00000371817 ADAMTS9Q9P2N4 1935 aa12.45□□□□□ -0.42
COL5A1-201ENST00000371817 MST1LQ2TV78 715 aa12.45□□□□□ -0.42
COL5A1-201ENST00000371817 C8orf86Q6ZUL3 223 aa12.45□□□□□ -0.42
COL5A1-201ENST00000371817 LYZL4Q96KX0 146 aa12.45□□□□□ -0.42
COL5A1-201ENST00000371817 HERV-K104P63124 156 aa12.44□□□□□ -0.42
COL5A1-201ENST00000371817 MRPL51Q4U2R6 128 aaKnown RBP12.44□□□□□ -0.42
COL5A1-201ENST00000371817 IGKV1-5P01602 117 aa12.44□□□□□ -0.42
COL5A1-201ENST00000371817 YPEL3P61236 119 aaPredicted RBP12.44□□□□□ -0.42
COL5A1-201ENST00000371817 MRPL14Q6P1L8 145 aaKnown RBP12.44□□□□□ -0.42
COL5A1-201ENST00000371817 A0A1W2PRX2 142 aa12.44□□□□□ -0.42
COL5A1-201ENST00000371817 J3QQQ9 107 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms