RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 PYGO2Q9BRQ0 406 aa5.19□□□□□ -1.58
UPF2-201ENST00000356352 SDHAF1A6NFY7 115 aa5.19□□□□□ -1.58
UPF2-201ENST00000356352 LHBP01229 141 aa5.19□□□□□ -1.58
UPF2-201ENST00000356352 C20orf78Q9BR46 151 aa5.19□□□□□ -1.58
UPF2-201ENST00000356352 SCRT2Q9NQ03 307 aa5.19□□□□□ -1.58
UPF2-201ENST00000356352 UNC13CQ8NB66 2214 aa5.19□□□□□ -1.58
UPF2-201ENST00000356352 J3QKU1 62 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 K7EMI3 77 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 HLA-DRB4P13762 266 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 RHOHQ15669 191 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 ZNF124Q15973 351 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 STPG4Q8N801 248 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 C8orf49Q96NF6 230 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 ATP6V0BQ99437 205 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 KLK9Q9UKQ9 250 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 HLA-DRB4X5D2U9 266 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 GAGE12BA1L429 117 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 GAGE7O76087 117 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 GAGE12FP0CL80 117 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 GAGE12GP0CL81 117 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 GAGE12IP0CL82 117 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 TCF15Q12870 199 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 TCTEX1D4Q5JR98 221 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 ZNRF2Q8NHG8 242 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 PPDPFLQ8WWR9 84 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 CASP8AP2Q9UKL3 1982 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 IGHV7-4-1A0A0J9YVY3 117 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 CGB7P0DN87 165 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 CR1LQ2VPA4 569 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 LGALS9BQ3B8N2 356 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 LGALS9CQ6DKI2 356 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 SMIM2Q9BVW6 85 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 NDUFS6O75380 124 aaKnown RBP5.18□□□□□ -1.58
UPF2-201ENST00000356352 PFN2P35080 140 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 GAGE6Q13070 117 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 FOXI2Q6ZQN5 318 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 MRPL53Q96EL3 112 aaKnown RBP5.18□□□□□ -1.58
UPF2-201ENST00000356352 NAA38Q9BRA0 125 aaKnown RBP5.18□□□□□ -1.58
UPF2-201ENST00000356352 REG4Q9BYZ8 158 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 TMEM213A2RRL7 107 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 C5orf63A6NC05 138 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 PRSS29PA6NIE9 313 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 F8W1H4 67 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 MESP1Q9BRJ9 268 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 NDUFA12Q9UI09 145 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 COX11Q9Y6N1 276 aa5.18□□□□□ -1.58
UPF2-201ENST00000356352 TRAV25A0A0B4J276 109 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 KNCNA6PVL3 124 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 H3BQ85 93 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 CFHR3Q02985 330 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 ANXA2RQ3ZCQ2 193 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 RNF152Q8N8N0 203 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 C8orf31Q8N9H6 132 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 DEFB104AQ8WTQ1 72 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 PRR25Q96S07 402 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 C20orf144Q9BQM9 153 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 A0A0G2JRQ6 117 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 ETV2O00321 342 aaPredicted RBP5.17□□□□□ -1.58
UPF2-201ENST00000356352 PRB4P10163 310 aaPredicted RBP5.17□□□□□ -1.58
UPF2-201ENST00000356352 PDCD11Q14690 1871 aaKnown RBP5.17□□□□□ -1.58
UPF2-201ENST00000356352 SH2D6Q7Z4S9 175 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 C18orf32Q8TCD1 76 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 TSSC4Q9Y5U2 329 aaPredicted RBP5.17□□□□□ -1.58
UPF2-201ENST00000356352 BRWD3Q6RI45 1802 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 SMIM27A0A1W2PRY6 76 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 MRPL51Q4U2R6 128 aaKnown RBP5.17□□□□□ -1.58
UPF2-201ENST00000356352 IGHV3-16A0A0C4DH30 117 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 C9orf118A6NHY6 69 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 K7EM74 188 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 C1orf122Q6ZSJ8 110 aa5.17□□□□□ -1.58
UPF2-201ENST00000356352 TDRD6O60522 2096 aaKnown RBP5.17□□□□□ -1.58
UPF2-201ENST00000356352 CHD5Q8TDI0 1954 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 RBAKDNA6NC62 111 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 HEATR5BQ9P2D3 2071 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 HERV-K104P63124 156 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 LINC01545Q5VT33 79 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 LURAP1LQ8IV03 231 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 NYNRINQ9P2P1 1898 aaKnown RBP5.16□□□□□ -1.58
UPF2-201ENST00000356352 SIVA1O15304 175 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 IGHG4P01861 327 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 C17orf58Q2M2W7 97 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 GTSF1LQ9H1H1 148 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 CKAP5Q14008 2032 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 GBF1Q92538 1859 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 PIKFYVEQ9Y2I7 2098 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 LOXP28300 417 aaPredicted RBP5.16□□□□□ -1.58
UPF2-201ENST00000356352 UBE2BP63146 152 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 HAMPP81172 84 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 BVES-AS1Q5T3Y7 98 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 Q6ZRM9 215 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 CITED1Q99966 193 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 PRO1854Q9UHT4 67 aa5.16□□□□□ -1.58
UPF2-201ENST00000356352 TRACP01848 142 aa5.15□□□□□ -1.58
UPF2-201ENST00000356352 ANGP03950 147 aaKnown RBP5.15□□□□□ -1.58
UPF2-201ENST00000356352 HLA-DMBP28068 263 aa5.15□□□□□ -1.58
UPF2-201ENST00000356352 MLANAQ16655 118 aa5.15□□□□□ -1.58
UPF2-201ENST00000356352 IGF2BP2-AS1Q96M15 143 aa5.15□□□□□ -1.58
UPF2-201ENST00000356352 LENEPQ9Y5L5 61 aa5.15□□□□□ -1.58
UPF2-201ENST00000356352 A8MWP6 167 aa5.15□□□□□ -1.58
UPF2-201ENST00000356352 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.15□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms