RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 LGALS9CQ6DKI2 356 aa8.4□□□□□ -1.06
RTN3-204ENST00000354497 ZNF562Q6V9R5 426 aa8.4□□□□□ -1.06
RTN3-204ENST00000354497 TMEM182Q6ZP80 229 aaPredicted RBP8.4□□□□□ -1.06
RTN3-204ENST00000354497 TMEM256Q8N2U0 113 aa8.4□□□□□ -1.06
RTN3-204ENST00000354497 MARCH1Q8TCQ1 289 aa8.4□□□□□ -1.06
RTN3-204ENST00000354497 CACNG8Q8WXS5 425 aa8.4□□□□□ -1.06
RTN3-204ENST00000354497 PARP12Q9H0J9 701 aaKnown RBP8.4□□□□□ -1.06
RTN3-204ENST00000354497 TMEM140Q9NV12 185 aa8.4□□□□□ -1.06
RTN3-204ENST00000354497 LOC102724200A0A096LPH7 203 aaPredicted RBP8.39□□□□□ -1.07
RTN3-204ENST00000354497 GAGE10A6NGK3 116 aa8.39□□□□□ -1.07
RTN3-204ENST00000354497 KRASP01116 189 aa8.39□□□□□ -1.07
RTN3-204ENST00000354497 GNG4P50150 75 aa8.39□□□□□ -1.07
RTN3-204ENST00000354497 RPL23P62829 140 aaKnown RBP8.39□□□□□ -1.07
RTN3-204ENST00000354497 BVES-AS1Q5T3Y7 98 aa8.39□□□□□ -1.07
RTN3-204ENST00000354497 AMMECR1LQ6DCA0 310 aa8.39□□□□□ -1.07
RTN3-204ENST00000354497 OR10P1Q8NGE3 313 aa8.39□□□□□ -1.07
RTN3-204ENST00000354497 FAM46BQ96A09 425 aa8.39□□□□□ -1.07
RTN3-204ENST00000354497 PMCHL2Q9BQD1 86 aa8.39□□□□□ -1.07
RTN3-204ENST00000354497 MRPL16Q9NX20 251 aaKnown RBP8.39□□□□□ -1.07
RTN3-204ENST00000354497 WASHC3Q9Y3C0 194 aa8.39□□□□□ -1.07
RTN3-204ENST00000354497 H0YJW9 148 aa8.38□□□□□ -1.07
RTN3-204ENST00000354497 PDE6DO43924 150 aa8.38□□□□□ -1.07
RTN3-204ENST00000354497 S1PR2O95136 353 aa8.38□□□□□ -1.07
RTN3-204ENST00000354497 CT45A6P0DMU7 189 aa8.38□□□□□ -1.07
RTN3-204ENST00000354497 CT45A5P0DMU8 189 aa8.38□□□□□ -1.07
RTN3-204ENST00000354497 CT45A7P0DMV0 189 aa8.38□□□□□ -1.07
RTN3-204ENST00000354497 HRH1P35367 487 aa8.38□□□□□ -1.07
RTN3-204ENST00000354497 LINC00310P59036 64 aa8.38□□□□□ -1.07
RTN3-204ENST00000354497 TAS2R46P59540 309 aa8.38□□□□□ -1.07
RTN3-204ENST00000354497 RPS16P62249 146 aaKnown RBP8.38□□□□□ -1.07
RTN3-204ENST00000354497 ADIRFQ15847 76 aa8.38□□□□□ -1.07
RTN3-204ENST00000354497 IL1F10Q8WWZ1 152 aa8.38□□□□□ -1.07
RTN3-204ENST00000354497 CYYR1Q96J86 154 aa8.38□□□□□ -1.07
RTN3-204ENST00000354497 IFI27L2Q9H2X8 130 aa8.38□□□□□ -1.07
RTN3-204ENST00000354497 GEMIN7Q9H840 131 aaKnown RBP8.38□□□□□ -1.07
RTN3-204ENST00000354497 TP53TG3Q9ULZ0 132 aa8.38□□□□□ -1.07
RTN3-204ENST00000354497 A0A1W2PPV4 95 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 MEIS3P1A6NDR6 274 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 K7EP34 96 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 ST8SIA3O43173 380 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 NUPR1O60356 82 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 MT-ND6P03923 174 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 APELAP0DMC3 54 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 EDN2P20800 178 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 ARL3P36405 182 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 PLP1P60201 277 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 HIST1H1AQ02539 215 aaPredicted RBP8.37□□□□□ -1.07
RTN3-204ENST00000354497 DEFB114Q30KQ6 69 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 PHLDA1Q8WV24 401 aaPredicted RBP8.37□□□□□ -1.07
RTN3-204ENST00000354497 GALMQ96C23 342 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 TM2D1Q9BX74 207 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 SH3BGRL3Q9H299 93 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 CKLFQ9UBR5 152 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 FBXL7Q9UJT9 491 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 VPS13DQ5THJ4 4388 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 K7EQM0 130 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 RAB29O14966 203 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 SPRY2O43597 315 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 NUDT3O95989 172 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 IFNA5P01569 189 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 CRISP2P16562 243 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 DEFB135Q30KP9 77 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 CST9LP1Q5W188 147 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 FA2HQ7L5A8 372 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 MRPL30Q8TCC3 161 aaKnown RBP8.37□□□□□ -1.07
RTN3-204ENST00000354497 USMG5Q96IX5 58 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 GPR82Q96P67 336 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 SMIM7Q9BQ49 75 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 EHFQ9NZC4 300 aa8.37□□□□□ -1.07
RTN3-204ENST00000354497 PIGBOS1A0A0B4J2F0 54 aa8.36□□□□□ -1.07
RTN3-204ENST00000354497 GAGE12HA6NDE8 117 aa8.36□□□□□ -1.07
RTN3-204ENST00000354497 A6NDN8 102 aa8.36□□□□□ -1.07
RTN3-204ENST00000354497 CRYM-AS1A6NIL9 109 aa8.36□□□□□ -1.07
RTN3-204ENST00000354497 H3BRM9 83 aa8.36□□□□□ -1.07
RTN3-204ENST00000354497 BMPR1BO00238 502 aa8.36□□□□□ -1.07
RTN3-204ENST00000354497 SERF2P84101 59 aa8.36□□□□□ -1.07
RTN3-204ENST00000354497 GAGE5Q13069 117 aa8.36□□□□□ -1.07
RTN3-204ENST00000354497 GAGE6Q13070 117 aa8.36□□□□□ -1.07
RTN3-204ENST00000354497 GLIPR1L1Q6UWM5 242 aa8.36□□□□□ -1.07
RTN3-204ENST00000354497 GAPTQ8N292 157 aa8.36□□□□□ -1.07
RTN3-204ENST00000354497 NECAP1Q8NC96 275 aa8.36□□□□□ -1.07
RTN3-204ENST00000354497 OR5H2Q8NGV7 314 aa8.36□□□□□ -1.07
RTN3-204ENST00000354497 MBNL3Q9NUK0 354 aaKnown RBP8.36□□□□□ -1.07
RTN3-204ENST00000354497 OR2T8A6NH00 312 aa8.35□□□□□ -1.07
RTN3-204ENST00000354497 C2orf70A6NJV1 201 aa8.35□□□□□ -1.07
RTN3-204ENST00000354497 TUSC2O75896 110 aa8.35□□□□□ -1.07
RTN3-204ENST00000354497 SERF1AO75920 110 aa8.35□□□□□ -1.07
RTN3-204ENST00000354497 IGKV1-16P04430 117 aa8.35□□□□□ -1.07
RTN3-204ENST00000354497 HERV-K104P63124 156 aa8.35□□□□□ -1.07
RTN3-204ENST00000354497 QRFPP83859 136 aa8.35□□□□□ -1.07
RTN3-204ENST00000354497 OR8I2Q8N0Y5 310 aa8.35□□□□□ -1.07
RTN3-204ENST00000354497 OR2C3Q8N628 320 aa8.35□□□□□ -1.07
RTN3-204ENST00000354497 RNF5Q99942 180 aa8.35□□□□□ -1.07
RTN3-204ENST00000354497 SAMD10Q9BYL1 202 aa8.35□□□□□ -1.07
RTN3-204ENST00000354497 SMIM3Q9BZL3 60 aa8.35□□□□□ -1.07
RTN3-204ENST00000354497 NRN1Q9NPD7 142 aa8.35□□□□□ -1.07
RTN3-204ENST00000354497 TMEM213A2RRL7 107 aa8.34□□□□□ -1.07
RTN3-204ENST00000354497 C9orf118A6NHY6 69 aa8.34□□□□□ -1.07
RTN3-204ENST00000354497 ZNF207O43670 478 aaKnown RBP8.34□□□□□ -1.07
RTN3-204ENST00000354497 APOA2P02652 100 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms