RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 CNN1P51911 297 aaKnown RBP11.61□□□□□ -0.55
CCDC28A-201ENST00000332797 RPP25LQ8N5L8 163 aaKnown RBP11.61□□□□□ -0.55
CCDC28A-201ENST00000332797 OR8A1Q8NGG7 326 aa11.61□□□□□ -0.55
CCDC28A-201ENST00000332797 WWC2-AS2Q96NR7 200 aa11.61□□□□□ -0.55
CCDC28A-201ENST00000332797 CLUHP3Q96NS8 147 aa11.61□□□□□ -0.55
CCDC28A-201ENST00000332797 XCL2Q9UBD3 114 aa11.61□□□□□ -0.55
CCDC28A-201ENST00000332797 TMUB2Q71RG4 321 aa11.6□□□□□ -0.55
CCDC28A-201ENST00000332797 EXOC3-AS1Q8N2X6 119 aa11.6□□□□□ -0.55
CCDC28A-201ENST00000332797 PHYHIPLQ96FC7 376 aa11.6□□□□□ -0.55
CCDC28A-201ENST00000332797 ZNF471Q9BX82 626 aaPredicted RBP11.6□□□□□ -0.55
CCDC28A-201ENST00000332797 C1QTNF4Q9BXJ3 329 aa11.6□□□□□ -0.55
CCDC28A-201ENST00000332797 SLC35B3Q9H1N7 401 aa11.6□□□□□ -0.55
CCDC28A-201ENST00000332797 AAMDCQ9H7C9 122 aa11.6□□□□□ -0.55
CCDC28A-201ENST00000332797 PRAC2D3DTV9 90 aa11.59□□□□□ -0.55
CCDC28A-201ENST00000332797 RAB24Q969Q5 203 aa11.59□□□□□ -0.55
CCDC28A-201ENST00000332797 RARRES2Q99969 163 aa11.59□□□□□ -0.55
CCDC28A-201ENST00000332797 A8MTW9 85 aa11.58□□□□□ -0.56
CCDC28A-201ENST00000332797 M0R3E3 92 aa11.58□□□□□ -0.56
CCDC28A-201ENST00000332797 ICAM4Q14773 271 aa11.58□□□□□ -0.56
CCDC28A-201ENST00000332797 AKR1C8PQ5T2L2 129 aa11.58□□□□□ -0.56
CCDC28A-201ENST00000332797 AMTNQ6UX39 209 aa11.58□□□□□ -0.56
CCDC28A-201ENST00000332797 PQLC2Q6ZP29 291 aa11.58□□□□□ -0.56
CCDC28A-201ENST00000332797 OR10J6PQ8NGY7 276 aa11.58□□□□□ -0.56
CCDC28A-201ENST00000332797 OR11H2Q8NH07 326 aa11.58□□□□□ -0.56
CCDC28A-201ENST00000332797 ACTR3CQ9C0K3 210 aaPredicted RBP11.58□□□□□ -0.56
CCDC28A-201ENST00000332797 EDA2RQ9HAV5 297 aa11.58□□□□□ -0.56
CCDC28A-201ENST00000332797 PRELID1Q9Y255 219 aa11.58□□□□□ -0.56
CCDC28A-201ENST00000332797 BOLA2-SMG1P6H3BVE0 249 aa11.57□□□□□ -0.56
CCDC28A-201ENST00000332797 ARL14EPLP0DKL9 152 aa11.57□□□□□ -0.56
CCDC28A-201ENST00000332797 RANP62826 216 aaKnown RBP11.57□□□□□ -0.56
CCDC28A-201ENST00000332797 CSNK1G2-AS1Q8NCQ2 148 aa11.57□□□□□ -0.56
CCDC28A-201ENST00000332797 MRPL53Q96EL3 112 aaKnown RBP11.57□□□□□ -0.56
CCDC28A-201ENST00000332797 PPP1R14DQ9NXH3 145 aa11.57□□□□□ -0.56
CCDC28A-201ENST00000332797 STAG3L2P0CL84 134 aa11.57□□□□□ -0.56
CCDC28A-201ENST00000332797 STAG3L3P0CL85 134 aa11.57□□□□□ -0.56
CCDC28A-201ENST00000332797 LGALSLQ3ZCW2 172 aaPredicted RBP11.57□□□□□ -0.56
CCDC28A-201ENST00000332797 SSX7Q7RTT5 188 aa11.57□□□□□ -0.56
CCDC28A-201ENST00000332797 M0R2Z0 102 aa11.56□□□□□ -0.56
CCDC28A-201ENST00000332797 EIF5AP63241 154 aaKnown RBP11.56□□□□□ -0.56
CCDC28A-201ENST00000332797 SPINK13Q1W4C9 94 aa11.56□□□□□ -0.56
CCDC28A-201ENST00000332797 Q9H3A6 140 aa11.56□□□□□ -0.56
CCDC28A-201ENST00000332797 DNAH7Q8WXX0 4024 aa11.55□□□□□ -0.56
CCDC28A-201ENST00000332797 A0A0J9YWU9 116 aa11.55□□□□□ -0.56
CCDC28A-201ENST00000332797 ZNF726P1Q15940 193 aa11.55□□□□□ -0.56
CCDC28A-201ENST00000332797 LYPD1Q8N2G4 141 aa11.55□□□□□ -0.56
CCDC28A-201ENST00000332797 IGHV3OR16-12A0A075B7B8 117 aa11.54□□□□□ -0.56
CCDC28A-201ENST00000332797 CTXND1A0A1B0GTU2 59 aa11.54□□□□□ -0.56
CCDC28A-201ENST00000332797 NPIPB6E9PJ23 425 aa11.54□□□□□ -0.56
CCDC28A-201ENST00000332797 CXorf1O96002 111 aa11.54□□□□□ -0.56
CCDC28A-201ENST00000332797 AMBPP02760 352 aa11.54□□□□□ -0.56
CCDC28A-201ENST00000332797 SEC11BP0C7V7 166 aa11.54□□□□□ -0.56
CCDC28A-201ENST00000332797 TPT1P13693 172 aaKnown RBP11.54□□□□□ -0.56
CCDC28A-201ENST00000332797 GCHFRP30047 84 aa11.54□□□□□ -0.56
CCDC28A-201ENST00000332797 IQCF2Q8IXL9 164 aa11.54□□□□□ -0.56
CCDC28A-201ENST00000332797 BAP18Q8IXM2 172 aa11.54□□□□□ -0.56
CCDC28A-201ENST00000332797 IGKV2-40A0A087WW87 121 aaPredicted RBP11.53□□□□□ -0.56
CCDC28A-201ENST00000332797 ZNF705EA8MWA4 302 aaPredicted RBP11.53□□□□□ -0.56
CCDC28A-201ENST00000332797 IGKV2D-40P01614 121 aaPredicted RBP11.53□□□□□ -0.56
CCDC28A-201ENST00000332797 CSN1S1P47710 185 aa11.53□□□□□ -0.56
CCDC28A-201ENST00000332797 ERCC8Q13216 396 aa11.53□□□□□ -0.56
CCDC28A-201ENST00000332797 IGF2BP2-AS1Q96M15 143 aa11.53□□□□□ -0.56
CCDC28A-201ENST00000332797 OTORQ9NRC9 128 aa11.53□□□□□ -0.56
CCDC28A-201ENST00000332797 X6R8D5 127 aa11.53□□□□□ -0.56
CCDC28A-201ENST00000332797 TRAV12-2A0A075B6T6 113 aa11.52□□□□□ -0.56
CCDC28A-201ENST00000332797 INSP01308 110 aa11.52□□□□□ -0.56
CCDC28A-201ENST00000332797 STOML3Q8TAV4 291 aa11.52□□□□□ -0.56
CCDC28A-201ENST00000332797 GOLT1BQ9Y3E0 138 aa11.52□□□□□ -0.56
CCDC28A-201ENST00000332797 IGHV4-28A0A0C4DH34 117 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 PGPA6NDG6 321 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 DEFB4AO15263 64 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 CRXO43186 299 aaPredicted RBP11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 CT45A10P0DMU9 189 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 CDKN1BP46527 198 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 FHITP49789 147 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 NKX2-5P52952 324 aaPredicted RBP11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 FGF8P55075 233 aaPredicted RBP11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 FAM74A1Q5RGS3 127 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 ZNF705AQ6ZN79 300 aaPredicted RBP11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 C9orf62Q8N4C0 152 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 MUC7Q8TAX7 377 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 TMED6Q8WW62 240 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 TMEM167BQ9NRX6 74 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 PLA2G2EQ9NZK7 142 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 RPH3ALQ9UNE2 315 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 MAP1LC3B2A6NCE7 125 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 UMAD1C9J7I0 102 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 MIFP14174 115 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 TSPOP30536 169 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 C1orf158Q8N1D5 194 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 Q8NAQ8 132 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 CMTM2Q8TAZ6 248 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 SUN5Q8TC36 379 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 VGLL1Q99990 258 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 TMEM208Q9BTX3 173 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 MAP1LC3BQ9GZQ8 125 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 AGPAT4-IT1Q9H0P7 198 aa11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 C11orf68Q9H3H3 251 aaKnown RBP11.51□□□□□ -0.57
CCDC28A-201ENST00000332797 J3KRW8 73 aa11.5□□□□□ -0.57
CCDC28A-201ENST00000332797 LEPP41159 167 aa11.5□□□□□ -0.57
CCDC28A-201ENST00000332797 TMEM78Q5T7P6 136 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms