RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 SAP25Q8TEE9 199 aa11.73□□□□□ -0.53
COL7A1-201ENST00000328333 LIME1Q9H400 295 aa11.73□□□□□ -0.53
COL7A1-201ENST00000328333 ETDBQ3ZM63 59 aa11.72□□□□□ -0.53
COL7A1-201ENST00000328333 FOXG1P55316 489 aaPredicted RBP11.72□□□□□ -0.53
COL7A1-201ENST00000328333 BVES-AS1Q5T3Y7 98 aa11.72□□□□□ -0.53
COL7A1-201ENST00000328333 MESP1Q9BRJ9 268 aa11.72□□□□□ -0.53
COL7A1-201ENST00000328333 ZNF329Q86UD4 541 aa11.72□□□□□ -0.53
COL7A1-201ENST00000328333 FAM216BQ8N7L0 139 aa11.72□□□□□ -0.53
COL7A1-201ENST00000328333 SRRM5B3KS81 715 aa11.72□□□□□ -0.53
COL7A1-201ENST00000328333 I3L3M4 83 aa11.72□□□□□ -0.53
COL7A1-201ENST00000328333 EXOC3-AS1Q8N2X6 119 aa11.72□□□□□ -0.53
COL7A1-201ENST00000328333 CELA2AP08217 269 aa11.72□□□□□ -0.53
COL7A1-201ENST00000328333 WNT2P09544 360 aa11.71□□□□□ -0.53
COL7A1-201ENST00000328333 GLMPQ8WWB7 406 aa11.71□□□□□ -0.53
COL7A1-201ENST00000328333 Q8N8P6 123 aa11.71□□□□□ -0.53
COL7A1-201ENST00000328333 IGHG3P01860 377 aa11.71□□□□□ -0.53
COL7A1-201ENST00000328333 PFN1P07737 140 aaKnown RBP11.71□□□□□ -0.53
COL7A1-201ENST00000328333 SMIM27A0A1W2PRY6 76 aa11.71□□□□□ -0.53
COL7A1-201ENST00000328333 HAX1O00165 279 aa11.71□□□□□ -0.53
COL7A1-201ENST00000328333 C1QCP02747 245 aa11.71□□□□□ -0.53
COL7A1-201ENST00000328333 AMN1Q8IY45 258 aa11.71□□□□□ -0.53
COL7A1-201ENST00000328333 SP7Q8TDD2 431 aaPredicted RBP11.71□□□□□ -0.54
COL7A1-201ENST00000328333 F8VRH5 84 aa11.71□□□□□ -0.54
COL7A1-201ENST00000328333 RBM3P98179 157 aaKnown RBP11.71□□□□□ -0.54
COL7A1-201ENST00000328333 PAQR4Q8N4S7 273 aaPredicted RBP11.71□□□□□ -0.54
COL7A1-201ENST00000328333 IGKV1-9A0A0C4DH69 117 aa11.71□□□□□ -0.54
COL7A1-201ENST00000328333 IGHV2-5P01817 119 aa11.71□□□□□ -0.54
COL7A1-201ENST00000328333 ZNF876PQ49A33 203 aa11.71□□□□□ -0.54
COL7A1-201ENST00000328333 STPG4Q8N801 248 aa11.7□□□□□ -0.54
COL7A1-201ENST00000328333 ZNF462Q96JM2 2506 aa11.7□□□□□ -0.54
COL7A1-201ENST00000328333 IGHV3-23P01764 117 aa11.7□□□□□ -0.54
COL7A1-201ENST00000328333 CDKN1AP38936 164 aa11.7□□□□□ -0.54
COL7A1-201ENST00000328333 SLC25A45Q8N413 288 aa11.7□□□□□ -0.54
COL7A1-201ENST00000328333 TLN1Q9Y490 2541 aaKnown RBP11.7□□□□□ -0.54
COL7A1-201ENST00000328333 LOC102723996A0A087X1L8 192 aa11.7□□□□□ -0.54
COL7A1-201ENST00000328333 TRAV41A0A0B4J266 112 aa11.7□□□□□ -0.54
COL7A1-201ENST00000328333 HLA-DRB4P13762 266 aa11.7□□□□□ -0.54
COL7A1-201ENST00000328333 NAA38Q9BRA0 125 aaKnown RBP11.7□□□□□ -0.54
COL7A1-201ENST00000328333 HLA-DRB4X5D2U9 266 aa11.7□□□□□ -0.54
COL7A1-201ENST00000328333 FGF6P10767 208 aa11.7□□□□□ -0.54
COL7A1-201ENST00000328333 IGKV2-40A0A087WW87 121 aaPredicted RBP11.69□□□□□ -0.54
COL7A1-201ENST00000328333 IGKV2D-40P01614 121 aaPredicted RBP11.69□□□□□ -0.54
COL7A1-201ENST00000328333 FAM104BQ5XKR9 115 aa11.69□□□□□ -0.54
COL7A1-201ENST00000328333 COLCA1Q6ZS62 124 aa11.69□□□□□ -0.54
COL7A1-201ENST00000328333 M0R1W7 72 aa11.69□□□□□ -0.54
COL7A1-201ENST00000328333 DMRTC2Q8IXT2 367 aaPredicted RBP11.69□□□□□ -0.54
COL7A1-201ENST00000328333 C1orf159Q96HA4 380 aa11.69□□□□□ -0.54
COL7A1-201ENST00000328333 DSCR9P59020 149 aa11.69□□□□□ -0.54
COL7A1-201ENST00000328333 Q6ZVH6 145 aa11.68□□□□□ -0.54
COL7A1-201ENST00000328333 DAZ1Q9NQZ3 744 aaKnown RBP11.68□□□□□ -0.54
COL7A1-201ENST00000328333 PPP1R32Q7Z5V6 425 aa11.68□□□□□ -0.54
COL7A1-201ENST00000328333 C14orf178Q8N769 122 aaPredicted RBP11.68□□□□□ -0.54
COL7A1-201ENST00000328333 SPXQ9BT56 116 aa11.68□□□□□ -0.54
COL7A1-201ENST00000328333 C1orf43Q9BWL3 253 aa11.68□□□□□ -0.54
COL7A1-201ENST00000328333 WIPF2Q8TF74 440 aaPredicted RBP11.68□□□□□ -0.54
COL7A1-201ENST00000328333 CARD19Q96LW7 228 aa11.68□□□□□ -0.54
COL7A1-201ENST00000328333 SHANK2-AS3Q9BTD1 123 aa11.68□□□□□ -0.54
COL7A1-201ENST00000328333 A0A0A6YYD4 124 aa11.67□□□□□ -0.54
COL7A1-201ENST00000328333 PRSS47A8MTI9 375 aa11.67□□□□□ -0.54
COL7A1-201ENST00000328333 IGLV3-12A0A075B6K2 115 aa11.67□□□□□ -0.54
COL7A1-201ENST00000328333 VSIRQ9H7M9 311 aa11.67□□□□□ -0.54
COL7A1-201ENST00000328333 IGHV2-70DA0A0C4DH43 119 aa11.67□□□□□ -0.54
COL7A1-201ENST00000328333 SHISA9B4DS77 424 aa11.67□□□□□ -0.54
COL7A1-201ENST00000328333 CD33P20138 364 aa11.67□□□□□ -0.54
COL7A1-201ENST00000328333 TCF15Q12870 199 aa11.67□□□□□ -0.54
COL7A1-201ENST00000328333 C1orf122Q6ZSJ8 110 aa11.67□□□□□ -0.54
COL7A1-201ENST00000328333 C20orf78Q9BR46 151 aa11.67□□□□□ -0.54
COL7A1-201ENST00000328333 TMEM14BQ9NUH8 114 aa11.67□□□□□ -0.54
COL7A1-201ENST00000328333 TRGV1A0A0A0MS02 117 aa11.66□□□□□ -0.54
COL7A1-201ENST00000328333 NPSP0C0P6 89 aa11.66□□□□□ -0.54
COL7A1-201ENST00000328333 ADCYAP1P18509 176 aa11.66□□□□□ -0.54
COL7A1-201ENST00000328333 HERVK_113P63121 156 aa11.66□□□□□ -0.54
COL7A1-201ENST00000328333 C7orf69Q9H7B7 122 aa11.66□□□□□ -0.54
COL7A1-201ENST00000328333 TRAV40A0A0B4J280 105 aa11.66□□□□□ -0.54
COL7A1-201ENST00000328333 CDCP2Q5VXM1 449 aa11.66□□□□□ -0.54
COL7A1-201ENST00000328333 NKAPP1Q8N9T2 125 aa11.66□□□□□ -0.54
COL7A1-201ENST00000328333 GFI1Q99684 422 aa11.66□□□□□ -0.54
COL7A1-201ENST00000328333 TP53TG1Q9Y2A0 90 aa11.66□□□□□ -0.54
COL7A1-201ENST00000328333 C5orf64Q2M2E5 130 aa11.66□□□□□ -0.54
COL7A1-201ENST00000328333 YPEL3P61236 119 aaPredicted RBP11.66□□□□□ -0.54
COL7A1-201ENST00000328333 SCRT1Q9BWW7 348 aa11.66□□□□□ -0.54
COL7A1-201ENST00000328333 TMEM14CQ9P0S9 112 aa11.65□□□□□ -0.54
COL7A1-201ENST00000328333 A0A0U1RRA0 63 aa11.65□□□□□ -0.54
COL7A1-201ENST00000328333 CRLF1O75462 422 aa11.65□□□□□ -0.54
COL7A1-201ENST00000328333 CRYGSP22914 178 aa11.65□□□□□ -0.54
COL7A1-201ENST00000328333 IGHV1-2P23083 117 aa11.65□□□□□ -0.54
COL7A1-201ENST00000328333 ZCCHC24Q8N2G6 241 aaKnown RBP11.65□□□□□ -0.54
COL7A1-201ENST00000328333 PYGO2Q9BRQ0 406 aa11.65□□□□□ -0.54
COL7A1-201ENST00000328333 S4R3C0 116 aa11.65□□□□□ -0.54
COL7A1-201ENST00000328333 KIR2DL5BA0A0G2JN68 375 aa11.65□□□□□ -0.54
COL7A1-201ENST00000328333 KIR2DL5BA0A0G2JPC4 375 aa11.65□□□□□ -0.54
COL7A1-201ENST00000328333 KIR2DL5AQ8N109 375 aa11.65□□□□□ -0.54
COL7A1-201ENST00000328333 IGFBPL1Q8WX77 278 aa11.65□□□□□ -0.54
COL7A1-201ENST00000328333 RPL15P61313 204 aaKnown RBP11.65□□□□□ -0.54
COL7A1-201ENST00000328333 STPG1Q5TH74 334 aa11.65□□□□□ -0.54
COL7A1-201ENST00000328333 A0A1W2PR77 199 aa11.65□□□□□ -0.54
COL7A1-201ENST00000328333 H0YJW9 148 aa11.65□□□□□ -0.54
COL7A1-201ENST00000328333 PRR19A6NJB7 356 aa11.65□□□□□ -0.55
COL7A1-201ENST00000328333 TIMM23O14925 209 aa11.64□□□□□ -0.55
COL7A1-201ENST00000328333 IGKV1-5P01602 117 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms