RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 TMEM241Q24JQ0 296 aa7.74□□□□□ -1.17
HMGB3-201ENST00000325307 HIST2H2BDQ6DRA6 164 aa7.74□□□□□ -1.17
HMGB3-201ENST00000325307 C20orf144Q9BQM9 153 aa7.74□□□□□ -1.17
HMGB3-201ENST00000325307 NIPSNAP3BQ9BS92 247 aa7.74□□□□□ -1.17
HMGB3-201ENST00000325307 PEF1Q9UBV8 284 aaKnown RBP7.74□□□□□ -1.17
HMGB3-201ENST00000325307 PFN1P07737 140 aaKnown RBP7.74□□□□□ -1.17
HMGB3-201ENST00000325307 IQCJQ1A5X6 159 aa7.74□□□□□ -1.17
HMGB3-201ENST00000325307 MIR17HGQ75NE6 70 aa7.74□□□□□ -1.17
HMGB3-201ENST00000325307 LINC00305Q7Z4B0 112 aa7.74□□□□□ -1.17
HMGB3-201ENST00000325307 C19orf24Q9BVV8 132 aa7.74□□□□□ -1.17
HMGB3-201ENST00000325307 SDF2L1Q9HCN8 221 aa7.74□□□□□ -1.17
HMGB3-201ENST00000325307 FUT9Q9Y231 359 aa7.74□□□□□ -1.17
HMGB3-201ENST00000325307 C2CD3Q4AC94 2353 aa7.74□□□□□ -1.17
HMGB3-201ENST00000325307 A0A1B0GV72 72 aa7.74□□□□□ -1.17
HMGB3-201ENST00000325307 PATE2Q6UY27 113 aa7.74□□□□□ -1.17
HMGB3-201ENST00000325307 DPF1Q92782 380 aa7.74□□□□□ -1.17
HMGB3-201ENST00000325307 UBE2E2Q96LR5 201 aa7.74□□□□□ -1.17
HMGB3-201ENST00000325307 FAM110AQ9BQ89 295 aa7.74□□□□□ -1.17
HMGB3-201ENST00000325307 OR7C2O60412 319 aa7.73□□□□□ -1.17
HMGB3-201ENST00000325307 RPS20P60866 119 aaKnown RBP7.73□□□□□ -1.17
HMGB3-201ENST00000325307 A0A1W2PRX2 142 aa7.73□□□□□ -1.17
HMGB3-201ENST00000325307 CLPSL1A2RUU4 121 aa7.73□□□□□ -1.17
HMGB3-201ENST00000325307 BMPR1BO00238 502 aa7.73□□□□□ -1.17
HMGB3-201ENST00000325307 PAGE4O60829 102 aa7.73□□□□□ -1.17
HMGB3-201ENST00000325307 LGALS1P09382 135 aaKnown RBP7.73□□□□□ -1.17
HMGB3-201ENST00000325307 TAS2R45P59539 299 aa7.73□□□□□ -1.17
HMGB3-201ENST00000325307 TOMM20LQ6UXN7 152 aa7.73□□□□□ -1.17
HMGB3-201ENST00000325307 TECRQ9NZ01 308 aaKnown RBP7.73□□□□□ -1.17
HMGB3-201ENST00000325307 TRAV5A0A0B4J249 113 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 ZNF207O43670 478 aaKnown RBP7.72□□□□□ -1.17
HMGB3-201ENST00000325307 TYMSP04818 313 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 ARL14EPLP0DKL9 152 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 SCGB1A1P11684 91 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 ATP5G3P48201 142 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 TCTEX1D4Q5JR98 221 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 ACTL10Q5JWF8 245 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 MRPL32Q9BYC8 188 aaKnown RBP7.72□□□□□ -1.17
HMGB3-201ENST00000325307 MANBALQ9NQG1 85 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 CD28P10747 220 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 PLP1P60201 277 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 RPEL1Q2QD12 228 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 MORN5Q5VZ52 161 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 RNF152Q8N8N0 203 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 KLHL30-AS1Q8NEE0 82 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 PARLQ9H300 379 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 RABAC1Q9UI14 185 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 URGCP-MRPS24S4R325 110 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 WI2-2373I1.2A0A1W2PRP0 233 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 IFNA1P01562 189 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 C8orf88P0DMB2 117 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 GBGT1Q8N5D6 347 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 MYOZ3Q8TDC0 251 aa7.72□□□□□ -1.17
HMGB3-201ENST00000325307 RPUSD4Q96CM3 377 aaKnown RBP7.72□□□□□ -1.17
HMGB3-201ENST00000325307 TRAV26-1A0A087WT03 109 aa7.71□□□□□ -1.17
HMGB3-201ENST00000325307 CXorf1O96002 111 aa7.71□□□□□ -1.17
HMGB3-201ENST00000325307 DEFB136Q30KP8 78 aa7.71□□□□□ -1.17
HMGB3-201ENST00000325307 COL5A1-AS1Q5SY13 56 aa7.71□□□□□ -1.17
HMGB3-201ENST00000325307 C18orf65Q6ZTR6 163 aa7.71□□□□□ -1.17
HMGB3-201ENST00000325307 IMMP2LQ96T52 175 aa7.71□□□□□ -1.17
HMGB3-201ENST00000325307 SLC25A39Q9BZJ4 359 aaPredicted RBP7.71□□□□□ -1.17
HMGB3-201ENST00000325307 F6UZH7 168 aa7.71□□□□□ -1.18
HMGB3-201ENST00000325307 TMEM250H0YL14 139 aa7.71□□□□□ -1.18
HMGB3-201ENST00000325307 PSMB3P49720 205 aa7.71□□□□□ -1.18
HMGB3-201ENST00000325307 DERL1Q9BUN8 251 aa7.71□□□□□ -1.18
HMGB3-201ENST00000325307 CST9LQ9H4G1 147 aa7.71□□□□□ -1.18
HMGB3-201ENST00000325307 MRPL27Q9P0M9 148 aaKnown RBP7.71□□□□□ -1.18
HMGB3-201ENST00000325307 OR10J4P0C629 311 aa7.71□□□□□ -1.18
HMGB3-201ENST00000325307 FAM106AQ4KMX7 169 aa7.71□□□□□ -1.18
HMGB3-201ENST00000325307 TEX43Q6ZNM6 134 aa7.71□□□□□ -1.18
HMGB3-201ENST00000325307 ZNF503Q96F45 646 aa7.71□□□□□ -1.18
HMGB3-201ENST00000325307 OR4F4Q96R69 305 aa7.71□□□□□ -1.18
HMGB3-201ENST00000325307 METTL26Q96S19 204 aa7.71□□□□□ -1.18
HMGB3-201ENST00000325307 IGHV3OR16-13A0A075B7E8 117 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 IGHV3-49A0A0A0MS15 119 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 IGHV3-74A0A0B4J1X5 117 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 RPL23P62829 140 aaKnown RBP7.7□□□□□ -1.18
HMGB3-201ENST00000325307 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.7□□□□□ -1.18
HMGB3-201ENST00000325307 CITED2Q99967 270 aaPredicted RBP7.7□□□□□ -1.18
HMGB3-201ENST00000325307 YTHDF2Q9Y5A9 579 aaKnown RBP7.7□□□□□ -1.18
HMGB3-201ENST00000325307 IGHV4OR15-8A0A075B7B6 117 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 A0A087WW49 117 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 C11orf94C9JXX5 98 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 NDUFA4O00483 81 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 PROK1P58294 105 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 UNQ9165/PRO28630Q6UXU0 137 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 PQLC2Q6ZP29 291 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 TMEM18Q96B42 140 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 DUX3Q96PT4 197 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 SMIM7Q9BQ49 75 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 MIEN1Q9BRT3 115 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 SLC25A2Q9BXI2 301 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 ZFAND3Q9H8U3 227 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 IGHV3-66A0A0C4DH42 116 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 GCHFRP30047 84 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 UBE2L3P68036 154 aaKnown RBP7.7□□□□□ -1.18
HMGB3-201ENST00000325307 C4orf3Q8WVX3 66 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 SHANK2-AS3Q9BTD1 123 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 PAXXQ9BUH6 204 aa7.7□□□□□ -1.18
HMGB3-201ENST00000325307 TRBV20OR9-2A0A075B6H5 130 aa7.69□□□□□ -1.18
HMGB3-201ENST00000325307 PYYP10082 97 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms