RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 RCHY1Q96PM5 261 aa9.31□□□□□ -0.92
VPS39-201ENST00000318006 IGHV1-8P0DP01 117 aa9.31□□□□□ -0.92
VPS39-201ENST00000318006 TAL2Q16559 108 aa9.31□□□□□ -0.92
VPS39-201ENST00000318006 RNASE8Q8TDE3 154 aaKnown RBP9.31□□□□□ -0.92
VPS39-201ENST00000318006 VGLL1Q99990 258 aa9.31□□□□□ -0.92
VPS39-201ENST00000318006 IGKV1D-17A0A075B6S4 117 aa9.31□□□□□ -0.92
VPS39-201ENST00000318006 SIGLEC15Q6ZMC9 328 aa9.31□□□□□ -0.92
VPS39-201ENST00000318006 WNK2Q9Y3S1 2297 aa9.31□□□□□ -0.92
VPS39-201ENST00000318006 HAX1O00165 279 aa9.31□□□□□ -0.92
VPS39-201ENST00000318006 NEGR1Q7Z3B1 354 aa9.31□□□□□ -0.92
VPS39-201ENST00000318006 GATD1Q8NB37 220 aa9.31□□□□□ -0.92
VPS39-201ENST00000318006 GAGE12JA6NER3 117 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 H3BMG7 143 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 GAGE7O76087 117 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 IGHV3-11P01762 117 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 GAGE12FP0CL80 117 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 GAGE12GP0CL81 117 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 GAGE12IP0CL82 117 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 GAGE4Q13068 117 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 MLANAQ16655 118 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 ZNF876PQ49A33 203 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 GAGE2AQ6NT46 116 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 H0YJW9 148 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 LINC00158P58513 81 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 TMEM213A2RRL7 107 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 VWC2Q2TAL6 325 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 GAFA1Q96PS6 74 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 PCNX1Q96RV3 2341 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 PRSS46E5RG02 174 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 ITLN2Q8WWU7 325 aaPredicted RBP9.3□□□□□ -0.92
VPS39-201ENST00000318006 HS3ST6Q96QI5 342 aa9.3□□□□□ -0.92
VPS39-201ENST00000318006 MYMXA0A1B0GTQ4 84 aa9.29□□□□□ -0.92
VPS39-201ENST00000318006 ZNF688P0C7X2 276 aa9.29□□□□□ -0.92
VPS39-201ENST00000318006 CEND1Q8N111 149 aa9.29□□□□□ -0.92
VPS39-201ENST00000318006 C14orf178Q8N769 122 aaPredicted RBP9.29□□□□□ -0.92
VPS39-201ENST00000318006 PLA2G2CQ5R387 149 aa9.29□□□□□ -0.92
VPS39-201ENST00000318006 RNF5Q99942 180 aa9.29□□□□□ -0.92
VPS39-201ENST00000318006 PDE6HQ13956 83 aa9.29□□□□□ -0.92
VPS39-201ENST00000318006 Q8N8P6 123 aa9.29□□□□□ -0.92
VPS39-201ENST00000318006 TMEM75Q8N9X5 138 aa9.29□□□□□ -0.92
VPS39-201ENST00000318006 TIMM21Q9BVV7 248 aa9.29□□□□□ -0.92
VPS39-201ENST00000318006 C1QTNF4Q9BXJ3 329 aa9.29□□□□□ -0.92
VPS39-201ENST00000318006 PAX8Q06710 450 aa9.29□□□□□ -0.92
VPS39-201ENST00000318006 GAGE5Q13069 117 aa9.29□□□□□ -0.92
VPS39-201ENST00000318006 GAGE6Q13070 117 aa9.29□□□□□ -0.92
VPS39-201ENST00000318006 RASL10AQ92737 203 aa9.29□□□□□ -0.92
VPS39-201ENST00000318006 IGKV1-39P01597 117 aa9.28□□□□□ -0.92
VPS39-201ENST00000318006 IGKV1D-39P04432 117 aa9.28□□□□□ -0.92
VPS39-201ENST00000318006 INAFM2P0DMQ5 153 aa9.28□□□□□ -0.92
VPS39-201ENST00000318006 TRGV2A0A075B6R0 118 aa9.28□□□□□ -0.92
VPS39-201ENST00000318006 SLC25A16P16260 332 aa9.28□□□□□ -0.92
VPS39-201ENST00000318006 C9orf139Q6ZV77 190 aa9.28□□□□□ -0.92
VPS39-201ENST00000318006 EFNA4P52798 201 aa9.28□□□□□ -0.92
VPS39-201ENST00000318006 SHANK2-AS3Q9BTD1 123 aa9.28□□□□□ -0.92
VPS39-201ENST00000318006 USF3Q68DE3 2245 aa9.28□□□□□ -0.92
VPS39-201ENST00000318006 LINC00477Q96M19 166 aa9.28□□□□□ -0.92
VPS39-201ENST00000318006 IGHV1-3A0A0C4DH29 117 aa9.27□□□□□ -0.93
VPS39-201ENST00000318006 TCF15Q12870 199 aa9.27□□□□□ -0.93
VPS39-201ENST00000318006 OR11H6Q8NGC7 330 aa9.27□□□□□ -0.93
VPS39-201ENST00000318006 PHLDA1Q8WV24 401 aaPredicted RBP9.27□□□□□ -0.93
VPS39-201ENST00000318006 DNAJC30Q96LL9 226 aa9.27□□□□□ -0.93
VPS39-201ENST00000318006 ADARB2-AS1A8MUL3 147 aa9.27□□□□□ -0.93
VPS39-201ENST00000318006 K7ERJ3 54 aa9.27□□□□□ -0.93
VPS39-201ENST00000318006 PAX4O43316 350 aa9.27□□□□□ -0.93
VPS39-201ENST00000318006 AMTNQ6UX39 209 aa9.27□□□□□ -0.93
VPS39-201ENST00000318006 MRPL51Q4U2R6 128 aaKnown RBP9.26□□□□□ -0.93
VPS39-201ENST00000318006 LY6G5BQ8NDX9 201 aa9.26□□□□□ -0.93
VPS39-201ENST00000318006 TMEM14BQ9NUH8 114 aa9.26□□□□□ -0.93
VPS39-201ENST00000318006 SIGLEC8Q9NYZ4 499 aa9.26□□□□□ -0.93
VPS39-201ENST00000318006 B5MCH6 92 aa9.26□□□□□ -0.93
VPS39-201ENST00000318006 KLF5Q13887 457 aaPredicted RBP9.26□□□□□ -0.93
VPS39-201ENST00000318006 RSPO1Q2MKA7 263 aaPredicted RBP9.26□□□□□ -0.93
VPS39-201ENST00000318006 C15orf32Q32M92 178 aa9.26□□□□□ -0.93
VPS39-201ENST00000318006 C2orf66Q6UXQ4 117 aa9.26□□□□□ -0.93
VPS39-201ENST00000318006 WIPF3A6NGB9 483 aa9.26□□□□□ -0.93
VPS39-201ENST00000318006 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.26□□□□□ -0.93
VPS39-201ENST00000318006 LEPROTO15243 131 aa9.26□□□□□ -0.93
VPS39-201ENST00000318006 DTX1Q86Y01 620 aa9.26□□□□□ -0.93
VPS39-201ENST00000318006 PLXND1Q9Y4D7 1925 aa9.26□□□□□ -0.93
VPS39-201ENST00000318006 MALP21145 153 aa9.26□□□□□ -0.93
VPS39-201ENST00000318006 WIPF2Q8TF74 440 aaPredicted RBP9.26□□□□□ -0.93
VPS39-201ENST00000318006 DEFB104AQ8WTQ1 72 aa9.26□□□□□ -0.93
VPS39-201ENST00000318006 DOPEY2Q9Y3R5 2298 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 SRRM4A7MD48 611 aaKnown RBP9.25□□□□□ -0.93
VPS39-201ENST00000318006 OOSP1A8MZH6 123 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 SPXQ9BT56 116 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 SIGLEC9Q9Y336 463 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 NUP210Q8TEM1 1887 aaPredicted RBP9.25□□□□□ -0.93
VPS39-201ENST00000318006 ABCA4P78363 2273 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 TEX48A0A1B0GUV7 120 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 FGF6P10767 208 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 LMO1P25800 156 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 C12orf74Q32Q52 190 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 IGFL3Q6UXB1 125 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 SS18L2Q9UHA2 77 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 PRO1854Q9UHT4 67 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 MSRB2Q9Y3D2 182 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 CADP27708 2225 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 IGKV1-16P04430 117 aa9.25□□□□□ -0.93
VPS39-201ENST00000318006 MRPL35Q9NZE8 188 aaKnown RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms