RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 LYZL1Q6UWQ5 148 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 Q8TAT8 98 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 URB1-AS1Q96HZ7 61 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 C8orf49Q96NF6 230 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 ABCA12Q86UK0 2595 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 RAI1Q7Z5J4 1906 aaPredicted RBP8.33□□□□□ -1.08
COL3A1-202ENST00000317840 NPIPB5A8MRT5 1133 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 PRSS1P07477 247 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 MFAP4P55083 255 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 CACNG7P62955 275 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 C7orf69Q9H7B7 122 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 THYN1Q9P016 225 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 DPM3Q9P2X0 92 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 FAM231BA6NCW3 169 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 NCR2O95944 276 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 PSG3Q16557 428 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 TM4SF20Q53R12 229 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 ORMDL3Q8N138 153 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 TNFRSF14Q92956 283 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 SHANK2-AS3Q9BTD1 123 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 GAGE10A6NGK3 116 aa8.32□□□□□ -1.08
COL3A1-202ENST00000317840 SHISA9B4DS77 424 aa8.32□□□□□ -1.08
COL3A1-202ENST00000317840 SMKR1H3BMG3 65 aa8.32□□□□□ -1.08
COL3A1-202ENST00000317840 NBR2O15453 112 aa8.32□□□□□ -1.08
COL3A1-202ENST00000317840 PRB1P04280 392 aa8.32□□□□□ -1.08
COL3A1-202ENST00000317840 HAX1O00165 279 aa8.32□□□□□ -1.08
COL3A1-202ENST00000317840 HIST1H1AQ02539 215 aaPredicted RBP8.32□□□□□ -1.08
COL3A1-202ENST00000317840 BVES-AS1Q5T3Y7 98 aa8.32□□□□□ -1.08
COL3A1-202ENST00000317840 C7orf71A4D174 169 aa8.32□□□□□ -1.08
COL3A1-202ENST00000317840 PVRIGQ6DKI7 326 aa8.32□□□□□ -1.08
COL3A1-202ENST00000317840 FSTL3O95633 263 aa8.31□□□□□ -1.08
COL3A1-202ENST00000317840 PPIFP30405 207 aaKnown RBP8.31□□□□□ -1.08
COL3A1-202ENST00000317840 ECSCRQ19T08 205 aa8.31□□□□□ -1.08
COL3A1-202ENST00000317840 NEU4Q8WWR8 484 aaPredicted RBP8.31□□□□□ -1.08
COL3A1-202ENST00000317840 ZNF414Q96IQ9 312 aa8.31□□□□□ -1.08
COL3A1-202ENST00000317840 C21orf62Q9NYP8 219 aa8.31□□□□□ -1.08
COL3A1-202ENST00000317840 IGHV3-66A0A0C4DH42 116 aa8.31□□□□□ -1.08
COL3A1-202ENST00000317840 TEX22C9J3V5 150 aa8.31□□□□□ -1.08
COL3A1-202ENST00000317840 RPL7P18124 248 aaKnown RBP8.31□□□□□ -1.08
COL3A1-202ENST00000317840 ATP5J2P56134 94 aa8.31□□□□□ -1.08
COL3A1-202ENST00000317840 CDSNQ15517 529 aa8.31□□□□□ -1.08
COL3A1-202ENST00000317840 FAM120AOSQ5T036 256 aa8.31□□□□□ -1.08
COL3A1-202ENST00000317840 KAAG1Q9UBP8 84 aa8.31□□□□□ -1.08
COL3A1-202ENST00000317840 PEF1Q9UBV8 284 aaKnown RBP8.31□□□□□ -1.08
COL3A1-202ENST00000317840 LAMA5O15230 3695 aa8.31□□□□□ -1.08
COL3A1-202ENST00000317840 COTL1Q14019 142 aa8.31□□□□□ -1.08
COL3A1-202ENST00000317840 ZNF491Q8N8L2 437 aa8.31□□□□□ -1.08
COL3A1-202ENST00000317840 MS4A6AQ9H2W1 248 aa8.31□□□□□ -1.08
COL3A1-202ENST00000317840 TRAV30A0A087WSZ9 112 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 IGHV3-49A0A0A0MS15 119 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 I3L2K1 104 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 Q6AWC8 147 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 C8orf31Q8N9H6 132 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 IGLV1-47P01700 117 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 ZNF747Q9BV97 191 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 TMEM14CQ9P0S9 112 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 TACC2O95359 2948 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 IGHV2-70DA0A0C4DH43 119 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 A6NDN8 102 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 SH2D1AO60880 128 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 ADORA2A-AS1P86434 159 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 LY6EQ16553 131 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 TMEM97Q5BJF2 176 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 SIGLEC15Q6ZMC9 328 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 FER1L6-AS1Q8NA97 138 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 UFC1Q9Y3C8 167 aa8.3□□□□□ -1.08
COL3A1-202ENST00000317840 K7EIM0 57 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 FAM106CPP0CH98 169 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 DLX6P56179 175 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 PLP1P60201 277 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 RPL11P62913 178 aaKnown RBP8.29□□□□□ -1.08
COL3A1-202ENST00000317840 PSG9Q00887 426 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 FAM106AQ4KMX7 169 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 SMIM15Q7Z3B0 74 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 A0A1B0GW15 77 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 J3KRW8 73 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 FCER1GP30273 86 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 SAPCD1Q5SSQ6 148 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 TMEM75Q8N9X5 138 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 ARPC1AQ92747 370 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 HIF1ANQ9NWT6 349 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 WNK1Q9H4A3 2382 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 FASNP49327 2511 aaKnown RBP8.29□□□□□ -1.08
COL3A1-202ENST00000317840 COL27A1Q8IZC6 1860 aaPredicted RBP8.29□□□□□ -1.08
COL3A1-202ENST00000317840 IGKV3-7A0A075B6H7 116 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 H3BUT2 72 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 K7ERU9 68 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 S100A7P31151 101 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 BMI1P35226 326 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 KALRNO60229 2985 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 ATMQ13315 3056 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 H3BRN7 92 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 HBDP02042 147 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 GTF2H5Q6ZYL4 71 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 BCL6BQ8N143 479 aaPredicted RBP8.29□□□□□ -1.08
COL3A1-202ENST00000317840 SIGLEC8Q9NYZ4 499 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 RABAC1Q9UI14 185 aa8.29□□□□□ -1.08
COL3A1-202ENST00000317840 TAX1BP3O14907 124 aa8.28□□□□□ -1.08
COL3A1-202ENST00000317840 EVI2AP22794 236 aa8.28□□□□□ -1.08
COL3A1-202ENST00000317840 GCSHP23434 173 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms