RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 AMTP48728 403 aa9.04□□□□□ -0.96
VPS4A-201ENST00000254950 PAX2Q02962 417 aa9.04□□□□□ -0.96
VPS4A-201ENST00000254950 C11orf52Q96A22 123 aa9.04□□□□□ -0.96
VPS4A-201ENST00000254950 IGHV3OR16-12A0A075B7B8 117 aa9.04□□□□□ -0.96
VPS4A-201ENST00000254950 TMEM89A2RUT3 159 aa9.04□□□□□ -0.96
VPS4A-201ENST00000254950 HIGD1CA8MV81 97 aa9.04□□□□□ -0.96
VPS4A-201ENST00000254950 MGPP08493 103 aa9.04□□□□□ -0.96
VPS4A-201ENST00000254950 SYT8Q8NBV8 401 aa9.04□□□□□ -0.96
VPS4A-201ENST00000254950 IGF1P05019 195 aa9.04□□□□□ -0.96
VPS4A-201ENST00000254950 NUDT10Q8NFP7 164 aa9.04□□□□□ -0.96
VPS4A-201ENST00000254950 NUDT11Q96G61 164 aa9.04□□□□□ -0.96
VPS4A-201ENST00000254950 AJUBAQ96IF1 538 aa9.04□□□□□ -0.96
VPS4A-201ENST00000254950 KLK15Q9H2R5 256 aa9.04□□□□□ -0.96
VPS4A-201ENST00000254950 MRPL27Q9P0M9 148 aaKnown RBP9.04□□□□□ -0.96
VPS4A-201ENST00000254950 ANKRD17O75179 2603 aaKnown RBP9.03□□□□□ -0.96
VPS4A-201ENST00000254950 TRAV21A0A0B4J279 112 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 IZUMO1RA6ND01 250 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 H0Y8G0 127 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 IGHV7-4-1A0A0J9YVY3 117 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 GRIFINA4D1Z8 144 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 AVPP01185 164 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 TRGC1P0CF51 173 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 RNASE4P34096 147 aaKnown RBP9.03□□□□□ -0.96
VPS4A-201ENST00000254950 ASIPP42127 132 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 Q86TA4 180 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 Q8TAT8 98 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 LINC00477Q96M19 166 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 IGKV1D-37A0A075B6S9 117 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 NDUFS6O75380 124 aaKnown RBP9.03□□□□□ -0.96
VPS4A-201ENST00000254950 LEPP41159 167 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 FER1L6-AS1Q8NA97 138 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 OR10D4PQ8NGN7 298 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 WNK1Q9H4A3 2382 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 ELOBQ15370 118 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 MORN5Q5VZ52 161 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 C8orf86Q6ZUL3 223 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 C1QL4Q86Z23 238 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 TMEM183AQ8IXX5 376 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 IMMP2LQ96T52 175 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 PRDM13Q9H4Q3 707 aa9.03□□□□□ -0.96
VPS4A-201ENST00000254950 CMC4P56277 68 aaPredicted RBP9.02□□□□□ -0.97
VPS4A-201ENST00000254950 KIAA1644Q3SXP7 199 aa9.02□□□□□ -0.97
VPS4A-201ENST00000254950 TCTEX1D4Q5JR98 221 aa9.02□□□□□ -0.97
VPS4A-201ENST00000254950 TSKUQ8WUA8 353 aa9.02□□□□□ -0.97
VPS4A-201ENST00000254950 ZNF414Q96IQ9 312 aa9.02□□□□□ -0.97
VPS4A-201ENST00000254950 SMPXQ9UHP9 88 aa9.02□□□□□ -0.97
VPS4A-201ENST00000254950 LAMA5O15230 3695 aa9.02□□□□□ -0.97
VPS4A-201ENST00000254950 TRBV24-1A0A075B6N3 115 aa9.02□□□□□ -0.97
VPS4A-201ENST00000254950 KRTDAPP60985 99 aa9.02□□□□□ -0.97
VPS4A-201ENST00000254950 SMIM12Q96EX1 92 aa9.02□□□□□ -0.97
VPS4A-201ENST00000254950 FAM167A-AS1Q96KT0 104 aa9.02□□□□□ -0.97
VPS4A-201ENST00000254950 DIRC3C9JPN6 131 aa9.02□□□□□ -0.97
VPS4A-201ENST00000254950 CA1P00915 261 aaPredicted RBP9.02□□□□□ -0.97
VPS4A-201ENST00000254950 CKS2P33552 79 aa9.02□□□□□ -0.97
VPS4A-201ENST00000254950 STHQ8IWL8 128 aa9.02□□□□□ -0.97
VPS4A-201ENST00000254950 UBE2E2Q96LR5 201 aa9.02□□□□□ -0.97
VPS4A-201ENST00000254950 DNAJC9-AS1A6NH13 148 aa9.01□□□□□ -0.97
VPS4A-201ENST00000254950 HOXD3P31249 432 aaPredicted RBP9.01□□□□□ -0.97
VPS4A-201ENST00000254950 C10orf91Q5T1B1 145 aa9.01□□□□□ -0.97
VPS4A-201ENST00000254950 NEU1Q99519 415 aa9.01□□□□□ -0.97
VPS4A-201ENST00000254950 A0A1B0GW15 77 aa9.01□□□□□ -0.97
VPS4A-201ENST00000254950 WI2-2373I1.2A0A1W2PRP0 233 aa9.01□□□□□ -0.97
VPS4A-201ENST00000254950 GP9P14770 177 aa9.01□□□□□ -0.97
VPS4A-201ENST00000254950 KCNS1Q96KK3 526 aa9.01□□□□□ -0.97
VPS4A-201ENST00000254950 PSMG3-AS1Q96PY0 264 aa9.01□□□□□ -0.97
VPS4A-201ENST00000254950 FOXL1Q12952 345 aa9.01□□□□□ -0.97
VPS4A-201ENST00000254950 MUC21Q5SSG8 566 aa9.01□□□□□ -0.97
VPS4A-201ENST00000254950 RNF182Q8N6D2 247 aa9.01□□□□□ -0.97
VPS4A-201ENST00000254950 TSTD3H0UI37 97 aa9□□□□□ -0.97
VPS4A-201ENST00000254950 SRIP30626 198 aa9□□□□□ -0.97
VPS4A-201ENST00000254950 TMEM75Q8N9X5 138 aa9□□□□□ -0.97
VPS4A-201ENST00000254950 NIT2Q9NQR4 276 aa9□□□□□ -0.97
VPS4A-201ENST00000254950 COL12A1Q99715 3063 aa9□□□□□ -0.97
VPS4A-201ENST00000254950 ADMP35318 185 aa9□□□□□ -0.97
VPS4A-201ENST00000254950 TSSC4Q9Y5U2 329 aaPredicted RBP9□□□□□ -0.97
VPS4A-201ENST00000254950 USP24Q9UPU5 2620 aa9□□□□□ -0.97
VPS4A-201ENST00000254950 M0R381 172 aa9□□□□□ -0.97
VPS4A-201ENST00000254950 IGHG4P01861 327 aa9□□□□□ -0.97
VPS4A-201ENST00000254950 FBLN7Q53RD9 439 aa9□□□□□ -0.97
VPS4A-201ENST00000254950 COLCA2A8K830 154 aa8.99□□□□□ -0.97
VPS4A-201ENST00000254950 C17orf77Q96MU5 243 aa8.99□□□□□ -0.97
VPS4A-201ENST00000254950 MUC21A0A0G2JKD1 596 aa8.99□□□□□ -0.97
VPS4A-201ENST00000254950 MUC21A0A140T8X8 626 aa8.99□□□□□ -0.97
VPS4A-201ENST00000254950 BUB3O43684 328 aa8.99□□□□□ -0.97
VPS4A-201ENST00000254950 ASPHD1Q5U4P2 390 aa8.99□□□□□ -0.97
VPS4A-201ENST00000254950 C12orf57Q99622 126 aa8.99□□□□□ -0.97
VPS4A-201ENST00000254950 M0R2Z0 102 aa8.99□□□□□ -0.97
VPS4A-201ENST00000254950 DUX3Q96PT4 197 aa8.99□□□□□ -0.97
VPS4A-201ENST00000254950 JMJD1CQ15652 2540 aa8.99□□□□□ -0.97
VPS4A-201ENST00000254950 DEFB136Q30KP8 78 aa8.99□□□□□ -0.97
VPS4A-201ENST00000254950 MTORP42345 2549 aa8.98□□□□□ -0.97
VPS4A-201ENST00000254950 DEFB131AP59861 70 aa8.98□□□□□ -0.97
VPS4A-201ENST00000254950 ERCC8Q13216 396 aa8.98□□□□□ -0.97
VPS4A-201ENST00000254950 CCDC140Q96MF4 163 aa8.98□□□□□ -0.97
VPS4A-201ENST00000254950 CBY3A6NI87 242 aa8.98□□□□□ -0.97
VPS4A-201ENST00000254950 SH2D1AO60880 128 aa8.98□□□□□ -0.97
VPS4A-201ENST00000254950 CD7P09564 240 aa8.98□□□□□ -0.97
VPS4A-201ENST00000254950 FOLR2P14207 255 aa8.98□□□□□ -0.97
VPS4A-201ENST00000254950 WFDC12Q8WWY7 111 aa8.98□□□□□ -0.97
VPS4A-201ENST00000254950 LINC01587Q99440 93 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms