RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 TMEM167AQ8TBQ9 72 aa11.36□□□□□ -0.59
SDC1-201ENST00000254351 FOXC2Q99958 501 aa11.36□□□□□ -0.59
SDC1-201ENST00000254351 ZNF71Q9NQZ8 489 aaPredicted RBP11.36□□□□□ -0.59
SDC1-201ENST00000254351 SH3BGRL2Q9UJC5 107 aa11.36□□□□□ -0.59
SDC1-201ENST00000254351 TMEM189A5PLL7 270 aa11.36□□□□□ -0.59
SDC1-201ENST00000254351 VMA21Q3ZAQ7 101 aa11.36□□□□□ -0.59
SDC1-201ENST00000254351 ZNF833PQ6ZTB9 187 aa11.36□□□□□ -0.59
SDC1-201ENST00000254351 THAP8Q8NA92 274 aa11.36□□□□□ -0.59
SDC1-201ENST00000254351 FBXL15Q9H469 300 aa11.36□□□□□ -0.59
SDC1-201ENST00000254351 RAB9BQ9NP90 201 aa11.36□□□□□ -0.59
SDC1-201ENST00000254351 OTORQ9NRC9 128 aa11.36□□□□□ -0.59
SDC1-201ENST00000254351 OVOL3O00110 214 aa11.35□□□□□ -0.59
SDC1-201ENST00000254351 RPL27AP46776 148 aaKnown RBP11.35□□□□□ -0.59
SDC1-201ENST00000254351 FDCSPQ8NFU4 85 aa11.35□□□□□ -0.59
SDC1-201ENST00000254351 OR4X2Q8NGF9 303 aa11.35□□□□□ -0.59
SDC1-201ENST00000254351 OR9G4Q8NGQ1 327 aa11.35□□□□□ -0.59
SDC1-201ENST00000254351 FER1L6-AS2Q96M78 137 aa11.35□□□□□ -0.59
SDC1-201ENST00000254351 VGLL1Q99990 258 aa11.35□□□□□ -0.59
SDC1-201ENST00000254351 IGLV2-23P01705 113 aa11.35□□□□□ -0.59
SDC1-201ENST00000254351 IL4P05112 153 aa11.35□□□□□ -0.59
SDC1-201ENST00000254351 ZC2HC1BQ5TFG8 222 aa11.35□□□□□ -0.59
SDC1-201ENST00000254351 CCDC144NLQ6NUI1 221 aa11.35□□□□□ -0.59
SDC1-201ENST00000254351 FTH1P19P0C7X4 201 aa11.35□□□□□ -0.59
SDC1-201ENST00000254351 FAM27E3Q08E93 113 aa11.35□□□□□ -0.59
SDC1-201ENST00000254351 LGALS9BQ3B8N2 356 aa11.35□□□□□ -0.59
SDC1-201ENST00000254351 LGALS9CQ6DKI2 356 aa11.35□□□□□ -0.59
SDC1-201ENST00000254351 KLK15Q9H2R5 256 aa11.35□□□□□ -0.59
SDC1-201ENST00000254351 SLC25A15Q9Y619 301 aa11.35□□□□□ -0.59
SDC1-201ENST00000254351 DCHS2Q6V1P9 2916 aa11.34□□□□□ -0.59
SDC1-201ENST00000254351 FCN3O75636 299 aa11.34□□□□□ -0.59
SDC1-201ENST00000254351 IGLV1-44P01699 117 aa11.34□□□□□ -0.59
SDC1-201ENST00000254351 APC2O95996 2303 aa11.34□□□□□ -0.59
SDC1-201ENST00000254351 ARHGAP32A7KAX9 2087 aa11.34□□□□□ -0.59
SDC1-201ENST00000254351 TRAV40A0A0B4J280 105 aa11.34□□□□□ -0.59
SDC1-201ENST00000254351 C16orf97H3BN30 126 aa11.34□□□□□ -0.59
SDC1-201ENST00000254351 CNIH1O95406 144 aa11.34□□□□□ -0.59
SDC1-201ENST00000254351 TGFAP01135 160 aa11.34□□□□□ -0.59
SDC1-201ENST00000254351 ORM1P02763 201 aa11.34□□□□□ -0.59
SDC1-201ENST00000254351 FAM104BQ5XKR9 115 aa11.34□□□□□ -0.59
SDC1-201ENST00000254351 SPAG8Q99932 426 aaPredicted RBP11.34□□□□□ -0.59
SDC1-201ENST00000254351 TRBV25-1A0A075B6N4 114 aa11.33□□□□□ -0.6
SDC1-201ENST00000254351 COX7A1P24310 79 aa11.33□□□□□ -0.6
SDC1-201ENST00000254351 CKS1BP61024 79 aa11.33□□□□□ -0.6
SDC1-201ENST00000254351 TRAV26-1A0A087WT03 109 aa11.33□□□□□ -0.6
SDC1-201ENST00000254351 NDUFA3O95167 84 aa11.33□□□□□ -0.6
SDC1-201ENST00000254351 HLA-DMBP28068 263 aa11.33□□□□□ -0.6
SDC1-201ENST00000254351 ASCL5Q7RTU5 278 aa11.33□□□□□ -0.6
SDC1-201ENST00000254351 NGBQ9NPG2 151 aa11.33□□□□□ -0.6
SDC1-201ENST00000254351 SH2D1AO60880 128 aa11.33□□□□□ -0.6
SDC1-201ENST00000254351 ZNF479Q96JC4 524 aa11.33□□□□□ -0.6
SDC1-201ENST00000254351 SPRY4Q9C004 299 aa11.33□□□□□ -0.6
SDC1-201ENST00000254351 AKAP6Q13023 2319 aa11.33□□□□□ -0.6
SDC1-201ENST00000254351 ACACAQ13085 2346 aa11.32□□□□□ -0.6
SDC1-201ENST00000254351 K7EQM0 130 aa11.32□□□□□ -0.6
SDC1-201ENST00000254351 ATP5IP56385 69 aaPredicted RBP11.32□□□□□ -0.6
SDC1-201ENST00000254351 CD300EQ496F6 205 aaPredicted RBP11.32□□□□□ -0.6
SDC1-201ENST00000254351 ATP6V0BQ99437 205 aa11.32□□□□□ -0.6
SDC1-201ENST00000254351 TRGV9Q99603 122 aa11.32□□□□□ -0.6
SDC1-201ENST00000254351 MAPKAPK5-AS1Q8N8E1 139 aa11.32□□□□□ -0.6
SDC1-201ENST00000254351 C20orf78Q9BR46 151 aa11.32□□□□□ -0.6
SDC1-201ENST00000254351 LINC00312Q9Y6C7 94 aa11.32□□□□□ -0.6
SDC1-201ENST00000254351 TRAV26-2A0A0B4J265 109 aa11.31□□□□□ -0.6
SDC1-201ENST00000254351 A0A1B0GV72 72 aa11.31□□□□□ -0.6
SDC1-201ENST00000254351 TMEM8BA6NDV4 472 aa11.31□□□□□ -0.6
SDC1-201ENST00000254351 ZNF474Q6S9Z5 364 aaPredicted RBP11.31□□□□□ -0.6
SDC1-201ENST00000254351 SPTA1P02549 2419 aa11.31□□□□□ -0.6
SDC1-201ENST00000254351 TRBV19A0A075B6N1 114 aa11.31□□□□□ -0.6
SDC1-201ENST00000254351 A0A1B0GWB2 263 aa11.31□□□□□ -0.6
SDC1-201ENST00000254351 WI2-2373I1.2A0A1W2PRP0 233 aa11.31□□□□□ -0.6
SDC1-201ENST00000254351 TM4SF5O14894 197 aa11.31□□□□□ -0.6
SDC1-201ENST00000254351 SPRY2O43597 315 aa11.31□□□□□ -0.6
SDC1-201ENST00000254351 HIST1H4GQ99525 98 aa11.31□□□□□ -0.6
SDC1-201ENST00000254351 EGR2P11161 476 aaPredicted RBP11.31□□□□□ -0.6
SDC1-201ENST00000254351 GLRXP35754 106 aa11.31□□□□□ -0.6
SDC1-201ENST00000254351 SPANXB1Q9NS25 103 aaPredicted RBP11.31□□□□□ -0.6
SDC1-201ENST00000254351 IGHV3OR16-13A0A075B7E8 117 aa11.3□□□□□ -0.6
SDC1-201ENST00000254351 IGHV3-74A0A0B4J1X5 117 aa11.3□□□□□ -0.6
SDC1-201ENST00000254351 ZNF292O60281 2723 aa11.3□□□□□ -0.6
SDC1-201ENST00000254351 ZFHX2Q9C0A1 2572 aaPredicted RBP11.3□□□□□ -0.6
SDC1-201ENST00000254351 PRRG2O14669 202 aa11.3□□□□□ -0.6
SDC1-201ENST00000254351 ZNF562Q6V9R5 426 aa11.3□□□□□ -0.6
SDC1-201ENST00000254351 SIGLEC15Q6ZMC9 328 aa11.3□□□□□ -0.6
SDC1-201ENST00000254351 TMEM158Q8WZ71 300 aa11.3□□□□□ -0.6
SDC1-201ENST00000254351 RIF1Q5UIP0 2472 aaKnown RBP11.3□□□□□ -0.6
SDC1-201ENST00000254351 IGKV1-17P01599 117 aa11.29□□□□□ -0.6
SDC1-201ENST00000254351 ZNF80P51504 273 aaPredicted RBP11.29□□□□□ -0.6
SDC1-201ENST00000254351 MRGPRG-AS1Q2M3A8 158 aa11.29□□□□□ -0.6
SDC1-201ENST00000254351 DKK4Q9UBT3 224 aa11.29□□□□□ -0.6
SDC1-201ENST00000254351 ZNF418Q8TF45 676 aaPredicted RBP11.29□□□□□ -0.6
SDC1-201ENST00000254351 PLSCR4Q9NRQ2 329 aa11.29□□□□□ -0.6
SDC1-201ENST00000254351 IGLL5B9A064 214 aa11.29□□□□□ -0.6
SDC1-201ENST00000254351 IGKCP01834 107 aa11.29□□□□□ -0.6
SDC1-201ENST00000254351 SRSF8Q9BRL6 282 aaKnown RBP11.29□□□□□ -0.6
SDC1-201ENST00000254351 MRPL35Q9NZE8 188 aaKnown RBP11.29□□□□□ -0.6
SDC1-201ENST00000254351 HHLA3Q9XRX5 114 aa11.29□□□□□ -0.6
SDC1-201ENST00000254351 MAP1AP78559 2803 aaPredicted RBP11.28□□□□□ -0.6
SDC1-201ENST00000254351 IGHV3-66A0A0C4DH42 116 aa11.28□□□□□ -0.6
SDC1-201ENST00000254351 J3KRW8 73 aa11.28□□□□□ -0.6
SDC1-201ENST00000254351 BMI1P35226 326 aa11.28□□□□□ -0.6
SDC1-201ENST00000254351 SEM1Q6ZVN7 128 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms