RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PSG8Q9UQ74 426 aa8.35□□□□□ -1.07
USP28-201ENST00000003302 CRYABP02511 175 aaKnown RBP8.35□□□□□ -1.07
USP28-201ENST00000003302 TM4SF20Q53R12 229 aa8.35□□□□□ -1.07
USP28-201ENST00000003302 FMC1Q96HJ9 113 aa8.35□□□□□ -1.07
USP28-201ENST00000003302 RAB9BQ9NP90 201 aa8.35□□□□□ -1.07
USP28-201ENST00000003302 LRRK2Q5S007 2527 aa8.34□□□□□ -1.07
USP28-201ENST00000003302 LGALS7P47929 136 aa8.34□□□□□ -1.07
USP28-201ENST00000003302 UQCRFS1P47985 274 aa8.34□□□□□ -1.07
USP28-201ENST00000003302 BVES-AS1Q5T3Y7 98 aa8.34□□□□□ -1.07
USP28-201ENST00000003302 OR8A1Q8NGG7 326 aa8.34□□□□□ -1.07
USP28-201ENST00000003302 DAZAP1Q96EP5 407 aaKnown RBP8.34□□□□□ -1.07
USP28-201ENST00000003302 RNF125Q96EQ8 232 aa8.34□□□□□ -1.07
USP28-201ENST00000003302 SERTM2A0A1B0GWG4 89 aa8.34□□□□□ -1.07
USP28-201ENST00000003302 EGR2P11161 476 aaPredicted RBP8.34□□□□□ -1.07
USP28-201ENST00000003302 MC5RP33032 325 aa8.34□□□□□ -1.07
USP28-201ENST00000003302 C16orf54Q6UWD8 224 aa8.34□□□□□ -1.07
USP28-201ENST00000003302 PSMG3-AS1Q96PY0 264 aa8.34□□□□□ -1.07
USP28-201ENST00000003302 ZNF207O43670 478 aaKnown RBP8.34□□□□□ -1.07
USP28-201ENST00000003302 HLA-DRB1P01911 266 aa8.34□□□□□ -1.07
USP28-201ENST00000003302 ZFP36P26651 326 aaKnown RBP8.34□□□□□ -1.07
USP28-201ENST00000003302 OR4A5Q8NH83 315 aa8.34□□□□□ -1.07
USP28-201ENST00000003302 SCRT2Q9NQ03 307 aa8.34□□□□□ -1.07
USP28-201ENST00000003302 LINC00527Q9UJ94 153 aa8.34□□□□□ -1.07
USP28-201ENST00000003302 C20orf202A1L168 122 aa8.33□□□□□ -1.08
USP28-201ENST00000003302 C18orf15Q96N68 181 aa8.33□□□□□ -1.08
USP28-201ENST00000003302 EPG5Q9HCE0 2579 aa8.33□□□□□ -1.08
USP28-201ENST00000003302 PCP4P48539 62 aa8.33□□□□□ -1.08
USP28-201ENST00000003302 PLP1P60201 277 aa8.33□□□□□ -1.08
USP28-201ENST00000003302 FAM208BQ5VWN6 2430 aa8.33□□□□□ -1.08
USP28-201ENST00000003302 S100A7P31151 101 aa8.33□□□□□ -1.08
USP28-201ENST00000003302 SHANK2-AS3Q9BTD1 123 aa8.33□□□□□ -1.08
USP28-201ENST00000003302 ZNF747Q9BV97 191 aa8.33□□□□□ -1.08
USP28-201ENST00000003302 SIGLEC8Q9NYZ4 499 aa8.33□□□□□ -1.08
USP28-201ENST00000003302 CHD6Q8TD26 2715 aa8.33□□□□□ -1.08
USP28-201ENST00000003302 H3BRN7 92 aa8.33□□□□□ -1.08
USP28-201ENST00000003302 CCL21O00585 134 aa8.33□□□□□ -1.08
USP28-201ENST00000003302 RHOGP84095 191 aa8.33□□□□□ -1.08
USP28-201ENST00000003302 MRPS16Q9Y3D3 137 aaKnown RBP8.33□□□□□ -1.08
USP28-201ENST00000003302 SOX21Q9Y651 276 aaPredicted RBP8.33□□□□□ -1.08
USP28-201ENST00000003302 AMMECR1LQ6DCA0 310 aa8.32□□□□□ -1.08
USP28-201ENST00000003302 RASL11AQ6T310 242 aa8.32□□□□□ -1.08
USP28-201ENST00000003302 ATP5L2Q7Z4Y8 100 aa8.32□□□□□ -1.08
USP28-201ENST00000003302 PCP2Q8IVA1 136 aa8.32□□□□□ -1.08
USP28-201ENST00000003302 A0A1B0GUT8 65 aa8.32□□□□□ -1.08
USP28-201ENST00000003302 EVI2AP22794 236 aa8.32□□□□□ -1.08
USP28-201ENST00000003302 RBPJQ06330 500 aa8.32□□□□□ -1.08
USP28-201ENST00000003302 FOXC1Q12948 553 aa8.32□□□□□ -1.08
USP28-201ENST00000003302 OTORQ9NRC9 128 aa8.32□□□□□ -1.08
USP28-201ENST00000003302 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.32□□□□□ -1.08
USP28-201ENST00000003302 NCBP2LA6PVI3 153 aaKnown RBP8.32□□□□□ -1.08
USP28-201ENST00000003302 NPYP01303 97 aa8.32□□□□□ -1.08
USP28-201ENST00000003302 ATP5IP56385 69 aaPredicted RBP8.32□□□□□ -1.08
USP28-201ENST00000003302 IGF1P05019 195 aa8.32□□□□□ -1.08
USP28-201ENST00000003302 APOBEC3AP31941 199 aaPredicted RBP8.32□□□□□ -1.08
USP28-201ENST00000003302 UBE2V1Q13404 147 aa8.32□□□□□ -1.08
USP28-201ENST00000003302 PSG3Q16557 428 aa8.32□□□□□ -1.08
USP28-201ENST00000003302 DKK2Q9UBU2 259 aa8.32□□□□□ -1.08
USP28-201ENST00000003302 SONP18583 2426 aaKnown RBP8.31□□□□□ -1.08
USP28-201ENST00000003302 HAX1O00165 279 aa8.31□□□□□ -1.08
USP28-201ENST00000003302 ZNF492Q9P255 531 aa8.31□□□□□ -1.08
USP28-201ENST00000003302 C11orf21Q9P2W6 132 aa8.31□□□□□ -1.08
USP28-201ENST00000003302 ACACBO00763 2458 aa8.31□□□□□ -1.08
USP28-201ENST00000003302 SH2D1AO60880 128 aa8.31□□□□□ -1.08
USP28-201ENST00000003302 SFTPCP11686 197 aa8.31□□□□□ -1.08
USP28-201ENST00000003302 RNF151Q2KHN1 245 aa8.31□□□□□ -1.08
USP28-201ENST00000003302 ASCL5Q7RTU5 278 aa8.31□□□□□ -1.08
USP28-201ENST00000003302 JMJD8Q96S16 334 aa8.31□□□□□ -1.08
USP28-201ENST00000003302 NDFIP1Q9BT67 221 aa8.31□□□□□ -1.08
USP28-201ENST00000003302 G3V318 75 aa8.31□□□□□ -1.08
USP28-201ENST00000003302 FGF6P10767 208 aa8.31□□□□□ -1.08
USP28-201ENST00000003302 SCNM1Q9BWG6 230 aa8.31□□□□□ -1.08
USP28-201ENST00000003302 PTPN13Q12923 2485 aa8.31□□□□□ -1.08
USP28-201ENST00000003302 IGKV2D-26A0A0A0MRZ7 120 aa8.3□□□□□ -1.08
USP28-201ENST00000003302 TNFRSF14Q92956 283 aa8.3□□□□□ -1.08
USP28-201ENST00000003302 AP5S1Q9NUS5 200 aa8.3□□□□□ -1.08
USP28-201ENST00000003302 TRAV26-2A0A0B4J265 109 aa8.3□□□□□ -1.08
USP28-201ENST00000003302 CACNG7P62955 275 aa8.3□□□□□ -1.08
USP28-201ENST00000003302 KLHDC1Q8N7A1 406 aa8.3□□□□□ -1.08
USP28-201ENST00000003302 C8orf31Q8N9H6 132 aa8.3□□□□□ -1.08
USP28-201ENST00000003302 IGHV3OR16-10A0A075B7F0 116 aa8.3□□□□□ -1.08
USP28-201ENST00000003302 IGHV2-70DA0A0C4DH43 119 aa8.3□□□□□ -1.08
USP28-201ENST00000003302 VAMP3Q15836 100 aa8.3□□□□□ -1.08
USP28-201ENST00000003302 COX19Q49B96 90 aa8.3□□□□□ -1.08
USP28-201ENST00000003302 TMEM11P17152 192 aa8.3□□□□□ -1.08
USP28-201ENST00000003302 MRPL51Q4U2R6 128 aaKnown RBP8.3□□□□□ -1.08
USP28-201ENST00000003302 IGF2-ASQ6U949 168 aa8.3□□□□□ -1.08
USP28-201ENST00000003302 BPIFA4PQ86YQ2 179 aa8.3□□□□□ -1.08
USP28-201ENST00000003302 STXBP6Q8NFX7 210 aa8.3□□□□□ -1.08
USP28-201ENST00000003302 NBR2O15453 112 aa8.29□□□□□ -1.08
USP28-201ENST00000003302 SAP30O75446 220 aa8.29□□□□□ -1.08
USP28-201ENST00000003302 CTSGP08311 255 aa8.29□□□□□ -1.08
USP28-201ENST00000003302 PSG9Q00887 426 aa8.29□□□□□ -1.08
USP28-201ENST00000003302 PAX8Q06710 450 aa8.29□□□□□ -1.08
USP28-201ENST00000003302 ETFRF1Q6IPR1 90 aa8.29□□□□□ -1.08
USP28-201ENST00000003302 ORAOV1Q8WV07 137 aa8.29□□□□□ -1.08
USP28-201ENST00000003302 GNG7O60262 68 aa8.29□□□□□ -1.08
USP28-201ENST00000003302 LINC01545Q5VT33 79 aa8.29□□□□□ -1.08
USP28-201ENST00000003302 C22orf15Q8WYQ4 148 aa8.29□□□□□ -1.08
USP28-201ENST00000003302 C2CD3Q4AC94 2353 aa8.29□□□□□ -1.08
USP28-201ENST00000003302 IGLV11-55A0A075B6I3 123 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 145.3 ms