RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 NUPR2A6NF83 97 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 C1QAP02745 245 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 ERCC8Q13216 396 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 COL9A2Q14055 689 aaPredicted RBP2.32□□□□□ -2.04
SCN1A-219ENST00000641575 PSG3Q16557 428 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 ASCL2Q99929 193 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 WFDC6Q9BQY6 131 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 TRAV26-2A0A0B4J265 109 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 MSGN1A6NI15 193 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 B5MCH6 92 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 NPIPB4C9JG80 1138 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 F5H768 121 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 GCHFRP30047 84 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 RND3P61587 244 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 COL24A1Q17RW2 1714 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 PPP1R27Q86WC6 154 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 FAM19A2Q8N3H0 131 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 CHTOPQ9Y3Y2 248 aaKnown RBP2.32□□□□□ -2.04
SCN1A-219ENST00000641575 SELENOKQ9Y6D0 94 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 hADV29S1A0JD25 119 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 PPBPP02775 128 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 TCRAP04437 139 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 LCNL1Q6ZST4 164 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 LYZL2Q7Z4W2 148 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 ZNF721Q8TF20 911 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 MLST8Q9BVC4 326 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 DAZ1Q9NQZ3 744 aaKnown RBP2.32□□□□□ -2.04
SCN1A-219ENST00000641575 TMEM202A6NGA9 273 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 KNCNA6PVL3 124 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 IGKCP01834 107 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 SPART-AS1P0CW21 52 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 IL11P20809 199 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 KLF5Q13887 457 aaPredicted RBP2.32□□□□□ -2.04
SCN1A-219ENST00000641575 PDE6HQ13956 83 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 CLLU1OSQ5K130 101 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 SIGLEC15Q6ZMC9 328 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 TPRX1Q8N7U7 411 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 PLEKHB2Q96CS7 222 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 SIP14410 1827 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 IGKV2D-24A0A075B6R9 120 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 A0A087X0K7 114 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 LINC01619G3V211 115 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 CDC42EP2O14613 210 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 IGKV1D-33P01593 117 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 IGKV1-33P01594 117 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 MST1LQ2TV78 715 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 DUX4L9Q6RFH8 374 aaPredicted RBP2.32□□□□□ -2.04
SCN1A-219ENST00000641575 HIST3H2BBQ8N257 126 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 GATD1Q8NB37 220 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 GNB1LQ9BYB4 327 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 DEPPQ9NTK1 212 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 LINC00312Q9Y6C7 94 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 LRBAP50851 2863 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 NHSQ6T4R5 1651 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 IGHV3-43A0A0B4J1X8 118 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 IGHV3-43DP0DP04 118 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 MST1P26927 711 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 SYNJ2BPP57105 145 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 LAGE3Q14657 143 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 C3AR1Q16581 482 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 CD300LDQ6UXZ3 194 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 TEX43Q6ZNM6 134 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 GVQW1Q8N7I0 195 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 TMEM170AQ8WVE7 144 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 A0A0G2JNJ9 132 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 FNDC10F2Z333 226 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 SOCS3O14543 225 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 APELAP0DMC3 54 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 TFF2Q03403 129 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 ANXA2RQ3ZCQ2 193 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 CYTL1Q9NRR1 136 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 Q9UFV3 132 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 GAGE12HA6NDE8 117 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 J3QT63 122 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 FXYD1O00168 92 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 C1QL1O75973 258 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 UBE2E1P51965 193 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 MIC13Q5XKP0 118 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 PVRIGQ6DKI7 326 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 SLC25A48Q6ZT89 311 aaKnown RBP2.32□□□□□ -2.04
SCN1A-219ENST00000641575 SRSF8Q9BRL6 282 aaKnown RBP2.32□□□□□ -2.04
SCN1A-219ENST00000641575 MUC21A0A0G2JKD1 596 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 MUC21A0A140T8X8 626 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 HIGD1CA8MV81 97 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 RAMP1O60894 148 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 HBDP02042 147 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 ZNF134P52741 427 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 KIAA0087Q14695 138 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 TGIF1Q15583 401 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 MUC21Q5SSG8 566 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 ATP5L2Q7Z4Y8 100 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 RFESDQ8TAC1 157 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 C9orf118A6NHY6 69 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 F8W1H4 67 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 HIST1H2BKO60814 126 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 HIST1H2BJP06899 126 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 HIST1H2BOP23527 126 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 PEBP1P30086 187 aaKnown RBP2.32□□□□□ -2.04
SCN1A-219ENST00000641575 CDAP32320 146 aa2.32□□□□□ -2.04
SCN1A-219ENST00000641575 HIST1H2BBP33778 126 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms