RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 LINC00052Q96N35 136 aa9.77□□□□□ -0.85
GTF3A-209ENST00000640289 ASCL2Q99929 193 aa9.77□□□□□ -0.85
GTF3A-209ENST00000640289 ZNF586Q9NXT0 402 aa9.77□□□□□ -0.85
GTF3A-209ENST00000640289 TMEM14CQ9P0S9 112 aa9.77□□□□□ -0.85
GTF3A-209ENST00000640289 ISLRO14498 428 aa9.76□□□□□ -0.85
GTF3A-209ENST00000640289 HMGB3O15347 200 aaKnown RBP9.76□□□□□ -0.85
GTF3A-209ENST00000640289 PRB4P10163 310 aaPredicted RBP9.76□□□□□ -0.85
GTF3A-209ENST00000640289 NKX2-5P52952 324 aaPredicted RBP9.76□□□□□ -0.85
GTF3A-209ENST00000640289 SBSPONQ8IVN8 264 aa9.76□□□□□ -0.85
GTF3A-209ENST00000640289 C9orf62Q8N4C0 152 aa9.76□□□□□ -0.85
GTF3A-209ENST00000640289 RPP25LQ8N5L8 163 aaKnown RBP9.76□□□□□ -0.85
GTF3A-209ENST00000640289 RNF182Q8N6D2 247 aa9.76□□□□□ -0.85
GTF3A-209ENST00000640289 LRRC20Q8TCA0 184 aa9.76□□□□□ -0.85
GTF3A-209ENST00000640289 ZNF503Q96F45 646 aa9.76□□□□□ -0.85
GTF3A-209ENST00000640289 B9D2Q9BPU9 175 aa9.76□□□□□ -0.85
GTF3A-209ENST00000640289 HRH4Q9H3N8 390 aa9.76□□□□□ -0.85
GTF3A-209ENST00000640289 A0A1W2PPV4 95 aa9.75□□□□□ -0.85
GTF3A-209ENST00000640289 OR7C2O60412 319 aa9.75□□□□□ -0.85
GTF3A-209ENST00000640289 OR10J4P0C629 311 aa9.75□□□□□ -0.85
GTF3A-209ENST00000640289 SPP1P10451 314 aa9.75□□□□□ -0.85
GTF3A-209ENST00000640289 RPL35AP18077 110 aaKnown RBP9.75□□□□□ -0.85
GTF3A-209ENST00000640289 CDC34P49427 236 aaPredicted RBP9.75□□□□□ -0.85
GTF3A-209ENST00000640289 TMEM41BQ5BJD5 291 aa9.75□□□□□ -0.85
GTF3A-209ENST00000640289 LCN15Q6UWW0 184 aa9.75□□□□□ -0.85
GTF3A-209ENST00000640289 SSX7Q7RTT5 188 aa9.75□□□□□ -0.85
GTF3A-209ENST00000640289 BLNKQ8WV28 456 aa9.75□□□□□ -0.85
GTF3A-209ENST00000640289 SAT2Q96F10 170 aaPredicted RBP9.75□□□□□ -0.85
GTF3A-209ENST00000640289 PAXXQ9BUH6 204 aa9.75□□□□□ -0.85
GTF3A-209ENST00000640289 OR51M1Q9H341 326 aa9.75□□□□□ -0.85
GTF3A-209ENST00000640289 ZNF331Q9NQX6 463 aaPredicted RBP9.75□□□□□ -0.85
GTF3A-209ENST00000640289 RPRMQ9NS64 109 aa9.75□□□□□ -0.85
GTF3A-209ENST00000640289 PLA2G2EQ9NZK7 142 aa9.75□□□□□ -0.85
GTF3A-209ENST00000640289 PRKDCP78527 4128 aaKnown RBP9.75□□□□□ -0.85
GTF3A-209ENST00000640289 TRBV19A0A075B6N1 114 aa9.74□□□□□ -0.85
GTF3A-209ENST00000640289 LOC102724200A0A096LPH7 203 aaPredicted RBP9.74□□□□□ -0.85
GTF3A-209ENST00000640289 F6UB75 175 aa9.74□□□□□ -0.85
GTF3A-209ENST00000640289 MBP02144 154 aa9.74□□□□□ -0.85
GTF3A-209ENST00000640289 HIST1H1EP10412 219 aaKnown RBP9.74□□□□□ -0.85
GTF3A-209ENST00000640289 HAGHQ16775 308 aa9.74□□□□□ -0.85
GTF3A-209ENST00000640289 KHDC3LQ587J8 217 aa9.74□□□□□ -0.85
GTF3A-209ENST00000640289 ACTL10Q5JWF8 245 aa9.74□□□□□ -0.85
GTF3A-209ENST00000640289 GDF5OSQ5U4N7 250 aa9.74□□□□□ -0.85
GTF3A-209ENST00000640289 SAMD13Q5VXD3 122 aa9.74□□□□□ -0.85
GTF3A-209ENST00000640289 RAB24Q969Q5 203 aa9.74□□□□□ -0.85
GTF3A-209ENST00000640289 FXYD5Q96DB9 178 aa9.74□□□□□ -0.85
GTF3A-209ENST00000640289 NDUFB4O95168 129 aa9.73□□□□□ -0.85
GTF3A-209ENST00000640289 TPT1P13693 172 aaKnown RBP9.73□□□□□ -0.85
GTF3A-209ENST00000640289 TAS2R45P59539 299 aa9.73□□□□□ -0.85
GTF3A-209ENST00000640289 ZNF726P1Q15940 193 aa9.73□□□□□ -0.85
GTF3A-209ENST00000640289 AKR1C8PQ5T2L2 129 aa9.73□□□□□ -0.85
GTF3A-209ENST00000640289 STHQ8IWL8 128 aa9.73□□□□□ -0.85
GTF3A-209ENST00000640289 BAP18Q8IXM2 172 aa9.73□□□□□ -0.85
GTF3A-209ENST00000640289 RNF141Q8WVD5 230 aa9.73□□□□□ -0.85
GTF3A-209ENST00000640289 SLC50A1Q9BRV3 221 aa9.73□□□□□ -0.85
GTF3A-209ENST00000640289 NBEAP1P0C6P0 100 aa9.72□□□□□ -0.85
GTF3A-209ENST00000640289 SEC11BP0C7V7 166 aa9.72□□□□□ -0.85
GTF3A-209ENST00000640289 STAG3L2P0CL84 134 aa9.72□□□□□ -0.85
GTF3A-209ENST00000640289 STAG3L3P0CL85 134 aa9.72□□□□□ -0.85
GTF3A-209ENST00000640289 EIF5AP63241 154 aaKnown RBP9.72□□□□□ -0.85
GTF3A-209ENST00000640289 UBE2L3P68036 154 aaKnown RBP9.72□□□□□ -0.85
GTF3A-209ENST00000640289 PSG3Q16557 428 aa9.72□□□□□ -0.85
GTF3A-209ENST00000640289 GUK1Q16774 197 aa9.72□□□□□ -0.85
GTF3A-209ENST00000640289 TRPT1Q86TN4 253 aaKnown RBP9.72□□□□□ -0.85
GTF3A-209ENST00000640289 ZNF738Q8NE65 137 aa9.72□□□□□ -0.85
GTF3A-209ENST00000640289 STOML3Q8TAV4 291 aa9.72□□□□□ -0.85
GTF3A-209ENST00000640289 PHYHIPLQ96FC7 376 aa9.72□□□□□ -0.85
GTF3A-209ENST00000640289 ACTR3CQ9C0K3 210 aaPredicted RBP9.72□□□□□ -0.85
GTF3A-209ENST00000640289 SAV1Q9H4B6 383 aaPredicted RBP9.72□□□□□ -0.85
GTF3A-209ENST00000640289 A0A0J9YX75 114 aa9.71□□□□□ -0.86
GTF3A-209ENST00000640289 ZNF705FA8MVS1 300 aaPredicted RBP9.71□□□□□ -0.86
GTF3A-209ENST00000640289 H3BMM0 161 aa9.71□□□□□ -0.86
GTF3A-209ENST00000640289 ZNF253O75346 499 aa9.71□□□□□ -0.86
GTF3A-209ENST00000640289 ZNF705DP0CH99 300 aaPredicted RBP9.71□□□□□ -0.86
GTF3A-209ENST00000640289 ZNF705BP0CI00 300 aaPredicted RBP9.71□□□□□ -0.86
GTF3A-209ENST00000640289 ARL14EPLP0DKL9 152 aa9.71□□□□□ -0.86
GTF3A-209ENST00000640289 HLA-DRB4P13762 266 aa9.71□□□□□ -0.86
GTF3A-209ENST00000640289 FHITP49789 147 aa9.71□□□□□ -0.86
GTF3A-209ENST00000640289 PDE6HQ13956 83 aa9.71□□□□□ -0.86
GTF3A-209ENST00000640289 PQLC2Q6ZP29 291 aa9.71□□□□□ -0.86
GTF3A-209ENST00000640289 FOXI2Q6ZQN5 318 aa9.71□□□□□ -0.86
GTF3A-209ENST00000640289 EXOC3-AS1Q8N2X6 119 aa9.71□□□□□ -0.86
GTF3A-209ENST00000640289 TMED6Q8WW62 240 aa9.71□□□□□ -0.86
GTF3A-209ENST00000640289 BOLA1Q9Y3E2 137 aa9.71□□□□□ -0.86
GTF3A-209ENST00000640289 HLA-DRB4X5D2U9 266 aa9.71□□□□□ -0.86
GTF3A-209ENST00000640289 CTXND1A0A1B0GTU2 59 aa9.7□□□□□ -0.86
GTF3A-209ENST00000640289 PRAC2D3DTV9 90 aa9.7□□□□□ -0.86
GTF3A-209ENST00000640289 IGKV3-20P01619 116 aa9.7□□□□□ -0.86
GTF3A-209ENST00000640289 EBLN2Q6P2I7 272 aa9.7□□□□□ -0.86
GTF3A-209ENST00000640289 SLC51BQ86UW2 128 aa9.7□□□□□ -0.86
GTF3A-209ENST00000640289 RPUSD4Q96CM3 377 aaKnown RBP9.7□□□□□ -0.86
GTF3A-209ENST00000640289 RETNQ9HD89 108 aa9.7□□□□□ -0.86
GTF3A-209ENST00000640289 M0R3E3 92 aa9.69□□□□□ -0.86
GTF3A-209ENST00000640289 GCHFRP30047 84 aa9.69□□□□□ -0.86
GTF3A-209ENST00000640289 APOC4P55056 127 aa9.69□□□□□ -0.86
GTF3A-209ENST00000640289 RANP62826 216 aaKnown RBP9.69□□□□□ -0.86
GTF3A-209ENST00000640289 PSG9Q00887 426 aa9.69□□□□□ -0.86
GTF3A-209ENST00000640289 ICAM4Q14773 271 aa9.69□□□□□ -0.86
GTF3A-209ENST00000640289 OR4B1Q8NGF8 309 aa9.69□□□□□ -0.86
GTF3A-209ENST00000640289 TM2D3Q9BRN9 247 aa9.69□□□□□ -0.86
GTF3A-209ENST00000640289 CSTL1Q9H114 145 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms