RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 RHOBP62745 196 aa13.34□□□□□ -0.27
CLN3-243ENST00000635973 ZNF345Q14585 488 aa13.34□□□□□ -0.27
CLN3-243ENST00000635973 IGFL4Q6B9Z1 124 aa13.34□□□□□ -0.27
CLN3-243ENST00000635973 MIR17HGQ75NE6 70 aa13.34□□□□□ -0.27
CLN3-243ENST00000635973 AKAP14Q86UN6 197 aa13.34□□□□□ -0.27
CLN3-243ENST00000635973 OR11H4Q8NGC9 324 aa13.34□□□□□ -0.27
CLN3-243ENST00000635973 C17orf77Q96MU5 243 aa13.34□□□□□ -0.27
CLN3-243ENST00000635973 RPRMQ9NS64 109 aa13.34□□□□□ -0.27
CLN3-243ENST00000635973 RFNGQ9Y644 331 aa13.34□□□□□ -0.27
CLN3-243ENST00000635973 STARD9Q9P2P6 4700 aa13.33□□□□□ -0.28
CLN3-243ENST00000635973 KIR2DL5BA0A0G2JN68 375 aa13.33□□□□□ -0.28
CLN3-243ENST00000635973 KIR2DL5BA0A0G2JPC4 375 aa13.33□□□□□ -0.28
CLN3-243ENST00000635973 H3BTX0 84 aa13.33□□□□□ -0.28
CLN3-243ENST00000635973 IGLC2P0DOY2 106 aa13.33□□□□□ -0.28
CLN3-243ENST00000635973 EBLN2Q6P2I7 272 aa13.33□□□□□ -0.28
CLN3-243ENST00000635973 TCTE3Q8IZS6 198 aa13.33□□□□□ -0.28
CLN3-243ENST00000635973 KIR2DL5AQ8N109 375 aa13.33□□□□□ -0.28
CLN3-243ENST00000635973 KIR2DL5BQ8NHK3 375 aa13.33□□□□□ -0.28
CLN3-243ENST00000635973 GNPNAT1Q96EK6 184 aaPredicted RBP13.33□□□□□ -0.28
CLN3-243ENST00000635973 C20orf173Q96LM9 149 aa13.33□□□□□ -0.28
CLN3-243ENST00000635973 SLC50A1Q9BRV3 221 aa13.33□□□□□ -0.28
CLN3-243ENST00000635973 PSMG3Q9BT73 122 aaPredicted RBP13.33□□□□□ -0.28
CLN3-243ENST00000635973 SLC25A2Q9BXI2 301 aa13.33□□□□□ -0.28
CLN3-243ENST00000635973 HRH4Q9H3N8 390 aa13.33□□□□□ -0.28
CLN3-243ENST00000635973 LYSTQ99698 3801 aa13.32□□□□□ -0.28
CLN3-243ENST00000635973 CSMD3Q7Z407 3707 aa13.32□□□□□ -0.28
CLN3-243ENST00000635973 TRAV8-2A0A0B4J237 113 aa13.32□□□□□ -0.28
CLN3-243ENST00000635973 A0A1W2PPV4 95 aa13.32□□□□□ -0.28
CLN3-243ENST00000635973 M6PRP20645 277 aa13.32□□□□□ -0.28
CLN3-243ENST00000635973 TAS2R45P59539 299 aa13.32□□□□□ -0.28
CLN3-243ENST00000635973 RAB2AP61019 212 aa13.32□□□□□ -0.28
CLN3-243ENST00000635973 GUK1Q16774 197 aa13.32□□□□□ -0.28
CLN3-243ENST00000635973 FOXI2Q6ZQN5 318 aa13.32□□□□□ -0.28
CLN3-243ENST00000635973 TRPT1Q86TN4 253 aaKnown RBP13.32□□□□□ -0.28
CLN3-243ENST00000635973 KCNRGQ8N5I3 272 aa13.32□□□□□ -0.28
CLN3-243ENST00000635973 RNF182Q8N6D2 247 aa13.32□□□□□ -0.28
CLN3-243ENST00000635973 ZNF738Q8NE65 137 aa13.32□□□□□ -0.28
CLN3-243ENST00000635973 ARPC5LQ9BPX5 153 aa13.32□□□□□ -0.28
CLN3-243ENST00000635973 CSTL1Q9H114 145 aa13.32□□□□□ -0.28
CLN3-243ENST00000635973 SH3BGRL3Q9H299 93 aa13.32□□□□□ -0.28
CLN3-243ENST00000635973 TMEM14CQ9P0S9 112 aa13.32□□□□□ -0.28
CLN3-243ENST00000635973 A0A0D9SG52 128 aa13.31□□□□□ -0.28
CLN3-243ENST00000635973 KANTRA0A1W2PQU2 76 aa13.31□□□□□ -0.28
CLN3-243ENST00000635973 H3BQ15 152 aa13.31□□□□□ -0.28
CLN3-243ENST00000635973 UBE2CO00762 179 aa13.31□□□□□ -0.28
CLN3-243ENST00000635973 OR7C2O60412 319 aa13.31□□□□□ -0.28
CLN3-243ENST00000635973 CA1P00915 261 aaPredicted RBP13.31□□□□□ -0.28
CLN3-243ENST00000635973 PYYP10082 97 aa13.31□□□□□ -0.28
CLN3-243ENST00000635973 DEFB1P60022 68 aa13.31□□□□□ -0.28
CLN3-243ENST00000635973 KHDC3LQ587J8 217 aa13.31□□□□□ -0.28
CLN3-243ENST00000635973 FAM122CQ6P4D5 195 aa13.31□□□□□ -0.28
CLN3-243ENST00000635973 OR10G4Q8NGN3 311 aa13.31□□□□□ -0.28
CLN3-243ENST00000635973 OR10G9Q8NGN4 311 aa13.31□□□□□ -0.28
CLN3-243ENST00000635973 OR10G7Q8NGN6 311 aa13.31□□□□□ -0.28
CLN3-243ENST00000635973 OR2G3Q8NGZ4 309 aa13.31□□□□□ -0.28
CLN3-243ENST00000635973 SAV1Q9H4B6 383 aaPredicted RBP13.31□□□□□ -0.28
CLN3-243ENST00000635973 BIRC6Q9NR09 4857 aa13.3□□□□□ -0.28
CLN3-243ENST00000635973 PFDN1O60925 122 aa13.3□□□□□ -0.28
CLN3-243ENST00000635973 MBP02144 154 aa13.3□□□□□ -0.28
CLN3-243ENST00000635973 HIST1H1EP10412 219 aaKnown RBP13.3□□□□□ -0.28
CLN3-243ENST00000635973 HLA-DRB4P13762 266 aa13.3□□□□□ -0.28
CLN3-243ENST00000635973 BLNKQ8WV28 456 aa13.3□□□□□ -0.28
CLN3-243ENST00000635973 PAXXQ9BUH6 204 aa13.3□□□□□ -0.28
CLN3-243ENST00000635973 OR51M1Q9H341 326 aa13.3□□□□□ -0.28
CLN3-243ENST00000635973 HLA-DRB4X5D2U9 266 aa13.3□□□□□ -0.28
CLN3-243ENST00000635973 F6UB75 175 aa13.29□□□□□ -0.28
CLN3-243ENST00000635973 H3BMM0 161 aa13.29□□□□□ -0.28
CLN3-243ENST00000635973 SLC17A3O00476 420 aa13.29□□□□□ -0.28
CLN3-243ENST00000635973 IGKV3-20P01619 116 aa13.29□□□□□ -0.28
CLN3-243ENST00000635973 OR10J4P0C629 311 aa13.29□□□□□ -0.28
CLN3-243ENST00000635973 SPP1P10451 314 aa13.29□□□□□ -0.28
CLN3-243ENST00000635973 HLA-DMBP28068 263 aa13.29□□□□□ -0.28
CLN3-243ENST00000635973 SERF2P84101 59 aa13.29□□□□□ -0.28
CLN3-243ENST00000635973 DEFB135Q30KP9 77 aa13.29□□□□□ -0.28
CLN3-243ENST00000635973 GDF5OSQ5U4N7 250 aa13.29□□□□□ -0.28
CLN3-243ENST00000635973 MORN3Q6PF18 240 aaPredicted RBP13.29□□□□□ -0.28
CLN3-243ENST00000635973 OR4B1Q8NGF8 309 aa13.29□□□□□ -0.28
CLN3-243ENST00000635973 FAM167A-AS1Q96KT0 104 aa13.29□□□□□ -0.28
CLN3-243ENST00000635973 ZNF331Q9NQX6 463 aaPredicted RBP13.29□□□□□ -0.28
CLN3-243ENST00000635973 ZNF586Q9NXT0 402 aa13.29□□□□□ -0.28
CLN3-243ENST00000635973 AGRNO00468 2067 aa13.28□□□□□ -0.28
CLN3-243ENST00000635973 TRBV19A0A075B6N1 114 aa13.28□□□□□ -0.28
CLN3-243ENST00000635973 A0A1B0GVG6 124 aa13.28□□□□□ -0.28
CLN3-243ENST00000635973 BCL2L11O43521 198 aa13.28□□□□□ -0.28
CLN3-243ENST00000635973 CDC34P49427 236 aaPredicted RBP13.28□□□□□ -0.28
CLN3-243ENST00000635973 NUTF2P61970 127 aaKnown RBP13.28□□□□□ -0.28
CLN3-243ENST00000635973 UBE2L3P68036 154 aaKnown RBP13.28□□□□□ -0.28
CLN3-243ENST00000635973 PSG3Q16557 428 aa13.28□□□□□ -0.28
CLN3-243ENST00000635973 Q6ZWC4 215 aa13.28□□□□□ -0.28
CLN3-243ENST00000635973 OVOL2Q9BRP0 275 aa13.28□□□□□ -0.28
CLN3-243ENST00000635973 ZNF471Q9BX82 626 aaPredicted RBP13.28□□□□□ -0.28
CLN3-243ENST00000635973 CYTL1Q9NRR1 136 aa13.28□□□□□ -0.28
CLN3-243ENST00000635973 A0A0J9YX75 114 aa13.27□□□□□ -0.29
CLN3-243ENST00000635973 ZNF253O75346 499 aa13.27□□□□□ -0.29
CLN3-243ENST00000635973 EIF3GO75821 320 aaKnown RBP eCLIP13.27□□□□□ -0.29
CLN3-243ENST00000635973 C1QBP02746 253 aa13.27□□□□□ -0.29
CLN3-243ENST00000635973 PDE6HQ13956 83 aa13.27□□□□□ -0.29
CLN3-243ENST00000635973 TMEM41BQ5BJD5 291 aa13.27□□□□□ -0.29
CLN3-243ENST00000635973 AKR1C8PQ5T2L2 129 aa13.27□□□□□ -0.29
CLN3-243ENST00000635973 RNF141Q8WVD5 230 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms