RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 SSX7Q7RTT5 188 aa9.85□□□□□ -0.83
LINC00540-202ENST00000616974 SAT2Q96F10 170 aaPredicted RBP9.85□□□□□ -0.83
LINC00540-202ENST00000616974 PARD6GQ9BYG4 376 aaPredicted RBP9.85□□□□□ -0.83
LINC00540-202ENST00000616974 CSTL1Q9H114 145 aa9.85□□□□□ -0.83
LINC00540-202ENST00000616974 DEFB4AO15263 64 aa9.84□□□□□ -0.83
LINC00540-202ENST00000616974 NDUFB4O95168 129 aa9.84□□□□□ -0.83
LINC00540-202ENST00000616974 PSMB3P49720 205 aa9.84□□□□□ -0.83
LINC00540-202ENST00000616974 PXDC1Q5TGL8 231 aa9.84□□□□□ -0.83
LINC00540-202ENST00000616974 ZNF709Q8N972 641 aa9.84□□□□□ -0.83
LINC00540-202ENST00000616974 ZMAT4Q9H898 229 aa9.84□□□□□ -0.83
LINC00540-202ENST00000616974 EDA2RQ9HAV5 297 aa9.84□□□□□ -0.83
LINC00540-202ENST00000616974 CYTL1Q9NRR1 136 aa9.84□□□□□ -0.83
LINC00540-202ENST00000616974 PFDN2Q9UHV9 154 aa9.84□□□□□ -0.83
LINC00540-202ENST00000616974 A0A087X0K7 114 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 M0R3E3 92 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 IFNA5P01569 189 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 HLA-DRB4P13762 266 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 BPIFA4PQ86YQ2 179 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 OR4B1Q8NGF8 309 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 OR1L4Q8NGR5 311 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 GATAD1Q8WUU5 269 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 BLNKQ8WV28 456 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 SAV1Q9H4B6 383 aaPredicted RBP9.83□□□□□ -0.84
LINC00540-202ENST00000616974 ZNF331Q9NQX6 463 aaPredicted RBP9.83□□□□□ -0.84
LINC00540-202ENST00000616974 XCL2Q9UBD3 114 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 HLA-DRB4X5D2U9 266 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 HYDINQ4G0P3 5121 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 PRM2P04554 102 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 KIR3DS1Q14943 382 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 EXOC3-AS1Q8N2X6 119 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 INO80EQ8NBZ0 244 aaPredicted RBP9.83□□□□□ -0.84
LINC00540-202ENST00000616974 SCGB1C1Q8TD33 95 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 PFDN5Q99471 154 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 HRH4Q9H3N8 390 aa9.83□□□□□ -0.84
LINC00540-202ENST00000616974 A0A0J9YX75 114 aa9.82□□□□□ -0.84
LINC00540-202ENST00000616974 CSNK1G2-AS1Q8NCQ2 148 aa9.82□□□□□ -0.84
LINC00540-202ENST00000616974 ASB13Q8WXK3 278 aa9.82□□□□□ -0.84
LINC00540-202ENST00000616974 GPR82Q96P67 336 aa9.82□□□□□ -0.84
LINC00540-202ENST00000616974 MFFQ9GZY8 342 aa9.82□□□□□ -0.84
LINC00540-202ENST00000616974 PLA2G2EQ9NZK7 142 aa9.82□□□□□ -0.84
LINC00540-202ENST00000616974 FUT9Q9Y231 359 aa9.82□□□□□ -0.84
LINC00540-202ENST00000616974 RPP25LQ8N5L8 163 aaKnown RBP9.82□□□□□ -0.84
LINC00540-202ENST00000616974 RNF183Q96D59 192 aa9.82□□□□□ -0.84
LINC00540-202ENST00000616974 PHYHIPLQ96FC7 376 aa9.82□□□□□ -0.84
LINC00540-202ENST00000616974 M0R2Z0 102 aa9.81□□□□□ -0.84
LINC00540-202ENST00000616974 ID1P41134 155 aa9.81□□□□□ -0.84
LINC00540-202ENST00000616974 CNN1P51911 297 aaKnown RBP9.81□□□□□ -0.84
LINC00540-202ENST00000616974 APOC4P55056 127 aa9.81□□□□□ -0.84
LINC00540-202ENST00000616974 AMTNQ6UX39 209 aa9.81□□□□□ -0.84
LINC00540-202ENST00000616974 ZNF738Q8NE65 137 aa9.81□□□□□ -0.84
LINC00540-202ENST00000616974 FXYD5Q96DB9 178 aa9.81□□□□□ -0.84
LINC00540-202ENST00000616974 TRBV19A0A075B6N1 114 aa9.8□□□□□ -0.84
LINC00540-202ENST00000616974 KIR2DL5BA0A0G2JN68 375 aa9.8□□□□□ -0.84
LINC00540-202ENST00000616974 KIR2DL5BA0A0G2JPC4 375 aa9.8□□□□□ -0.84
LINC00540-202ENST00000616974 C17orf112F2Z3M2 114 aa9.8□□□□□ -0.84
LINC00540-202ENST00000616974 SPRY2O43597 315 aa9.8□□□□□ -0.84
LINC00540-202ENST00000616974 FAM122CQ6P4D5 195 aa9.8□□□□□ -0.84
LINC00540-202ENST00000616974 FOXI2Q6ZQN5 318 aa9.8□□□□□ -0.84
LINC00540-202ENST00000616974 Q6ZWC4 215 aa9.8□□□□□ -0.84
LINC00540-202ENST00000616974 KIR2DL5AQ8N109 375 aa9.8□□□□□ -0.84
LINC00540-202ENST00000616974 KIR2DL5BQ8NHK3 375 aa9.8□□□□□ -0.84
LINC00540-202ENST00000616974 A0A0J9YWU9 116 aa9.8□□□□□ -0.84
LINC00540-202ENST00000616974 MEOX2P50222 304 aa9.8□□□□□ -0.84
LINC00540-202ENST00000616974 PSG3Q16557 428 aa9.8□□□□□ -0.84
LINC00540-202ENST00000616974 LRRC20Q8TCA0 184 aa9.8□□□□□ -0.84
LINC00540-202ENST00000616974 RPRMQ9NS64 109 aa9.8□□□□□ -0.84
LINC00540-202ENST00000616974 TRAV12-2A0A075B6T6 113 aa9.79□□□□□ -0.84
LINC00540-202ENST00000616974 OR7C2O60412 319 aa9.79□□□□□ -0.84
LINC00540-202ENST00000616974 CMC4P56277 68 aaPredicted RBP9.79□□□□□ -0.84
LINC00540-202ENST00000616974 HIST1H1AQ02539 215 aaPredicted RBP9.79□□□□□ -0.84
LINC00540-202ENST00000616974 ZNF726P1Q15940 193 aa9.79□□□□□ -0.84
LINC00540-202ENST00000616974 LCN15Q6UWW0 184 aa9.79□□□□□ -0.84
LINC00540-202ENST00000616974 RPUSD4Q96CM3 377 aaKnown RBP9.79□□□□□ -0.84
LINC00540-202ENST00000616974 KMT2AQ03164 3969 aa9.79□□□□□ -0.84
LINC00540-202ENST00000616974 RBMY1A1P0DJD3 496 aaKnown RBP9.79□□□□□ -0.84
LINC00540-202ENST00000616974 RBMY1CP0DJD4 496 aa9.79□□□□□ -0.84
LINC00540-202ENST00000616974 FHITP49789 147 aa9.79□□□□□ -0.84
LINC00540-202ENST00000616974 ZNF266Q14584 549 aa9.79□□□□□ -0.84
LINC00540-202ENST00000616974 RBMY1FQ15415 496 aaKnown RBP9.79□□□□□ -0.84
LINC00540-202ENST00000616974 SPINK13Q1W4C9 94 aa9.79□□□□□ -0.84
LINC00540-202ENST00000616974 BAP18Q8IXM2 172 aa9.79□□□□□ -0.84
LINC00540-202ENST00000616974 OR11H2Q8NH07 326 aa9.79□□□□□ -0.84
LINC00540-202ENST00000616974 WWC2-AS2Q96NR7 200 aa9.79□□□□□ -0.84
LINC00540-202ENST00000616974 OR51M1Q9H341 326 aa9.79□□□□□ -0.84
LINC00540-202ENST00000616974 X6R8D5 127 aa9.79□□□□□ -0.84
LINC00540-202ENST00000616974 CRXO43186 299 aaPredicted RBP9.78□□□□□ -0.84
LINC00540-202ENST00000616974 M6PRP20645 277 aa9.78□□□□□ -0.84
LINC00540-202ENST00000616974 KCNRGQ8N5I3 272 aa9.78□□□□□ -0.84
LINC00540-202ENST00000616974 OR10G4Q8NGN3 311 aa9.78□□□□□ -0.84
LINC00540-202ENST00000616974 OR10G9Q8NGN4 311 aa9.78□□□□□ -0.84
LINC00540-202ENST00000616974 OR10G7Q8NGN6 311 aa9.78□□□□□ -0.84
LINC00540-202ENST00000616974 PAXXQ9BUH6 204 aa9.78□□□□□ -0.84
LINC00540-202ENST00000616974 TMEM14CQ9P0S9 112 aa9.78□□□□□ -0.84
LINC00540-202ENST00000616974 NBEAP1P0C6P0 100 aa9.77□□□□□ -0.84
LINC00540-202ENST00000616974 HIST1H1EP10412 219 aaKnown RBP9.77□□□□□ -0.84
LINC00540-202ENST00000616974 ERCC8Q13216 396 aa9.77□□□□□ -0.84
LINC00540-202ENST00000616974 ZFAND6Q6FIF0 208 aa9.77□□□□□ -0.84
LINC00540-202ENST00000616974 OR8A1Q8NGG7 326 aa9.77□□□□□ -0.84
LINC00540-202ENST00000616974 RNF141Q8WVD5 230 aa9.77□□□□□ -0.84
LINC00540-202ENST00000616974 RARRES2Q99969 163 aa9.77□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms