RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 IGLV3-9A0A075B6K5 115 aa10.08□□□□□ -0.8
LIG1-221ENST00000613670 PRSS57Q6UWY2 283 aa10.08□□□□□ -0.8
LIG1-221ENST00000613670 MS4A6AQ9H2W1 248 aa10.08□□□□□ -0.8
LIG1-221ENST00000613670 TIMM23O14925 209 aa10.08□□□□□ -0.8
LIG1-221ENST00000613670 CGB3P0DN86 165 aa10.08□□□□□ -0.8
LIG1-221ENST00000613670 CGB7P0DN87 165 aa10.08□□□□□ -0.8
LIG1-221ENST00000613670 GATA4P43694 442 aa10.08□□□□□ -0.8
LIG1-221ENST00000613670 KLF5Q13887 457 aaPredicted RBP10.08□□□□□ -0.8
LIG1-221ENST00000613670 OR2K2Q8NGT1 345 aa10.08□□□□□ -0.8
LIG1-221ENST00000613670 LINC01560Q8TB33 94 aa10.08□□□□□ -0.8
LIG1-221ENST00000613670 IFI27L1Q96BM0 104 aa10.08□□□□□ -0.8
LIG1-221ENST00000613670 DSCAMO60469 2012 aa10.08□□□□□ -0.8
LIG1-221ENST00000613670 TET2Q6N021 2002 aaPredicted RBP10.08□□□□□ -0.8
LIG1-221ENST00000613670 FAM231BA6NCW3 169 aa10.07□□□□□ -0.8
LIG1-221ENST00000613670 FER1L6-AS1Q8NA97 138 aa10.07□□□□□ -0.8
LIG1-221ENST00000613670 IGHV1-3A0A0C4DH29 117 aa10.07□□□□□ -0.8
LIG1-221ENST00000613670 IGHV2-70DA0A0C4DH43 119 aa10.07□□□□□ -0.8
LIG1-221ENST00000613670 ZNF207O43670 478 aaKnown RBP10.07□□□□□ -0.8
LIG1-221ENST00000613670 CD5LO43866 347 aa10.07□□□□□ -0.8
LIG1-221ENST00000613670 HBDP02042 147 aa10.07□□□□□ -0.8
LIG1-221ENST00000613670 BMI1P35226 326 aa10.07□□□□□ -0.8
LIG1-221ENST00000613670 FAM215AQ9Y5M1 114 aa10.07□□□□□ -0.8
LIG1-221ENST00000613670 SPANXN1Q5VSR9 72 aa10.07□□□□□ -0.8
LIG1-221ENST00000613670 C8orf49Q96NF6 230 aa10.07□□□□□ -0.8
LIG1-221ENST00000613670 FOXC2Q99958 501 aa10.07□□□□□ -0.8
LIG1-221ENST00000613670 J3QR89 54 aa10.06□□□□□ -0.8
LIG1-221ENST00000613670 RPL7P18124 248 aaKnown RBP10.06□□□□□ -0.8
LIG1-221ENST00000613670 LY6HO94772 140 aa10.06□□□□□ -0.8
LIG1-221ENST00000613670 CR1LQ2VPA4 569 aa10.06□□□□□ -0.8
LIG1-221ENST00000613670 SEM1Q6ZVN7 128 aa10.06□□□□□ -0.8
LIG1-221ENST00000613670 MYOZ3Q8TDC0 251 aa10.06□□□□□ -0.8
LIG1-221ENST00000613670 FAM57AQ8TBR7 257 aa10.06□□□□□ -0.8
LIG1-221ENST00000613670 LEPP41159 167 aa10.05□□□□□ -0.8
LIG1-221ENST00000613670 FAM169BQ8N8A8 192 aa10.05□□□□□ -0.8
LIG1-221ENST00000613670 ZNF492Q9P255 531 aa10.05□□□□□ -0.8
LIG1-221ENST00000613670 A0A0G2JLM5 398 aa10.05□□□□□ -0.8
LIG1-221ENST00000613670 KIR3DS1Q14943 382 aa10.05□□□□□ -0.8
LIG1-221ENST00000613670 C22orf34Q6ZV56 151 aa10.05□□□□□ -0.8
LIG1-221ENST00000613670 THAP8Q8NA92 274 aa10.05□□□□□ -0.8
LIG1-221ENST00000613670 NHP2Q9NX24 153 aaKnown RBP10.05□□□□□ -0.8
LIG1-221ENST00000613670 C21orf62Q9NYP8 219 aa10.05□□□□□ -0.8
LIG1-221ENST00000613670 DSPP15924 2871 aaKnown RBP10.05□□□□□ -0.8
LIG1-221ENST00000613670 IGKV1D-37A0A075B6S9 117 aa10.05□□□□□ -0.8
LIG1-221ENST00000613670 SMIM13P0DJ93 91 aa10.05□□□□□ -0.8
LIG1-221ENST00000613670 LOXP28300 417 aaPredicted RBP10.05□□□□□ -0.8
LIG1-221ENST00000613670 SEC11AP67812 179 aa10.05□□□□□ -0.8
LIG1-221ENST00000613670 NCOR1P1Q9H4R4 102 aa10.05□□□□□ -0.8
LIG1-221ENST00000613670 VWC2LB2RUY7 222 aa10.04□□□□□ -0.8
LIG1-221ENST00000613670 LTAP01374 205 aa10.04□□□□□ -0.8
LIG1-221ENST00000613670 Q6AWC8 147 aa10.04□□□□□ -0.8
LIG1-221ENST00000613670 MBD6Q96DN6 1003 aa10.04□□□□□ -0.8
LIG1-221ENST00000613670 TAX1BP3O14907 124 aa10.04□□□□□ -0.8
LIG1-221ENST00000613670 PSG3Q16557 428 aa10.04□□□□□ -0.8
LIG1-221ENST00000613670 CT83Q5H943 113 aa10.04□□□□□ -0.8
LIG1-221ENST00000613670 FAM120AOSQ5T036 256 aa10.04□□□□□ -0.8
LIG1-221ENST00000613670 SPATA12Q7Z6I5 190 aa10.04□□□□□ -0.8
LIG1-221ENST00000613670 SMIM12Q96EX1 92 aa10.04□□□□□ -0.8
LIG1-221ENST00000613670 RABAC1Q9UI14 185 aa10.04□□□□□ -0.8
LIG1-221ENST00000613670 SH2D1AO60880 128 aa10.04□□□□□ -0.8
LIG1-221ENST00000613670 GFRA4Q9GZZ7 299 aa10.04□□□□□ -0.8
LIG1-221ENST00000613670 DPM3Q9P2X0 92 aa10.04□□□□□ -0.8
LIG1-221ENST00000613670 CTSZQ9UBR2 303 aa10.04□□□□□ -0.8
LIG1-221ENST00000613670 IGLC1P0CG04 106 aa10.03□□□□□ -0.8
LIG1-221ENST00000613670 SCGB1D4Q6XE38 83 aa10.03□□□□□ -0.8
LIG1-221ENST00000613670 DEFB125Q8N687 156 aa10.03□□□□□ -0.8
LIG1-221ENST00000613670 JKAMPQ9P055 326 aa10.03□□□□□ -0.8
LIG1-221ENST00000613670 A0A0G2JNJ9 132 aa10.03□□□□□ -0.8
LIG1-221ENST00000613670 HIST1H4GQ99525 98 aa10.03□□□□□ -0.8
LIG1-221ENST00000613670 ZNF747Q9BV97 191 aa10.03□□□□□ -0.8
LIG1-221ENST00000613670 Q9UFV3 132 aa10.03□□□□□ -0.8
LIG1-221ENST00000613670 ADAMTS20P59510 1910 aa10.03□□□□□ -0.8
LIG1-221ENST00000613670 COX8AP10176 69 aa10.03□□□□□ -0.8
LIG1-221ENST00000613670 GP9P14770 177 aa10.03□□□□□ -0.8
LIG1-221ENST00000613670 KLRD1Q13241 179 aa10.03□□□□□ -0.8
LIG1-221ENST00000613670 SFTA2Q6UW10 78 aa10.03□□□□□ -0.8
LIG1-221ENST00000613670 GTSCR1Q86UQ5 136 aa10.03□□□□□ -0.8
LIG1-221ENST00000613670 ABHD17AQ96GS6 310 aa10.03□□□□□ -0.8
LIG1-221ENST00000613670 RAB1BQ9H0U4 201 aa10.03□□□□□ -0.8
LIG1-221ENST00000613670 TRBV19A0A075B6N1 114 aa10.02□□□□□ -0.8
LIG1-221ENST00000613670 A0A1B0GW15 77 aa10.02□□□□□ -0.8
LIG1-221ENST00000613670 NBR2O15453 112 aa10.02□□□□□ -0.8
LIG1-221ENST00000613670 MGPP08493 103 aa10.02□□□□□ -0.8
LIG1-221ENST00000613670 ANKRD39Q53RE8 183 aa10.02□□□□□ -0.8
LIG1-221ENST00000613670 TEX36Q5VZQ5 186 aa10.02□□□□□ -0.8
LIG1-221ENST00000613670 HAX1O00165 279 aa10.02□□□□□ -0.81
LIG1-221ENST00000613670 TMEM155Q4W5P6 130 aa10.02□□□□□ -0.81
LIG1-221ENST00000613670 BCL6BQ8N143 479 aaPredicted RBP10.02□□□□□ -0.81
LIG1-221ENST00000613670 SIGLEC8Q9NYZ4 499 aa10.02□□□□□ -0.81
LIG1-221ENST00000613670 FREM2Q5SZK8 3169 aa10.02□□□□□ -0.81
LIG1-221ENST00000613670 CEP295Q9C0D2 2601 aa10.02□□□□□ -0.81
LIG1-221ENST00000613670 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.02□□□□□ -0.81
LIG1-221ENST00000613670 BUB1B-PAK6H3BSN5 160 aa10.02□□□□□ -0.81
LIG1-221ENST00000613670 APOBEC3AP31941 199 aaPredicted RBP10.02□□□□□ -0.81
LIG1-221ENST00000613670 CDKN1BP46527 198 aa10.02□□□□□ -0.81
LIG1-221ENST00000613670 HSD52Q0P140 79 aa10.02□□□□□ -0.81
LIG1-221ENST00000613670 PVRIGQ6DKI7 326 aa10.02□□□□□ -0.81
LIG1-221ENST00000613670 C19orf67A6NJJ6 358 aa10.01□□□□□ -0.81
LIG1-221ENST00000613670 K7EM74 188 aa10.01□□□□□ -0.81
LIG1-221ENST00000613670 SAP30O75446 220 aa10.01□□□□□ -0.81
LIG1-221ENST00000613670 RHOGP84095 191 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms