RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 SLC25A39Q9BZJ4 359 aaPredicted RBP14.56□□□□□ -0.08
UPF1-210ENST00000600689 ZNF785A8K8V0 405 aa14.56□□□□□ -0.08
UPF1-210ENST00000600689 TMEM133Q9H2Q1 129 aa14.56□□□□□ -0.08
UPF1-210ENST00000600689 FBXL15Q9H469 300 aa14.56□□□□□ -0.08
UPF1-210ENST00000600689 A0A0G2JLM5 398 aa14.55□□□□□ -0.08
UPF1-210ENST00000600689 HAX1O00165 279 aa14.55□□□□□ -0.08
UPF1-210ENST00000600689 C8orf46Q8TAG6 207 aa14.55□□□□□ -0.08
UPF1-210ENST00000600689 C1RLQ9NZP8 487 aa14.55□□□□□ -0.08
UPF1-210ENST00000600689 ZNF492Q9P255 531 aa14.55□□□□□ -0.08
UPF1-210ENST00000600689 SOX21Q9Y651 276 aaPredicted RBP14.55□□□□□ -0.08
UPF1-210ENST00000600689 CUL9Q8IWT3 2517 aa14.55□□□□□ -0.08
UPF1-210ENST00000600689 IGHV3OR16-8A0A075B7F1 116 aa14.55□□□□□ -0.08
UPF1-210ENST00000600689 IGLV2-11P01706 119 aa14.55□□□□□ -0.08
UPF1-210ENST00000600689 BCL6BQ8N143 479 aaPredicted RBP14.55□□□□□ -0.08
UPF1-210ENST00000600689 ABHD17AQ96GS6 310 aa14.55□□□□□ -0.08
UPF1-210ENST00000600689 SIGLEC8Q9NYZ4 499 aa14.55□□□□□ -0.08
UPF1-210ENST00000600689 TMEM238C9JI98 176 aa14.55□□□□□ -0.08
UPF1-210ENST00000600689 KLF17Q5JT82 389 aaPredicted RBP14.55□□□□□ -0.08
UPF1-210ENST00000600689 IGFL4Q6B9Z1 124 aa14.55□□□□□ -0.08
UPF1-210ENST00000600689 PIP4P2Q8N4L2 257 aa14.55□□□□□ -0.08
UPF1-210ENST00000600689 COX7A1P24310 79 aa14.54□□□□□ -0.08
UPF1-210ENST00000600689 GTF2H5Q6ZYL4 71 aa14.54□□□□□ -0.08
UPF1-210ENST00000600689 FAM169BQ8N8A8 192 aa14.54□□□□□ -0.08
UPF1-210ENST00000600689 OR2K2Q8NGT1 345 aa14.54□□□□□ -0.08
UPF1-210ENST00000600689 GCSHP23434 173 aa14.54□□□□□ -0.08
UPF1-210ENST00000600689 CT83Q5H943 113 aa14.54□□□□□ -0.08
UPF1-210ENST00000600689 LYZL1Q6UWQ5 148 aa14.54□□□□□ -0.08
UPF1-210ENST00000600689 OR1N2Q8NGR9 330 aa14.54□□□□□ -0.08
UPF1-210ENST00000600689 RASL11BQ9BPW5 248 aa14.54□□□□□ -0.08
UPF1-210ENST00000600689 PSG8Q9UQ74 426 aa14.54□□□□□ -0.08
UPF1-210ENST00000600689 IGLV3-9A0A075B6K5 115 aa14.53□□□□□ -0.08
UPF1-210ENST00000600689 A1L4Q6 167 aa14.53□□□□□ -0.08
UPF1-210ENST00000600689 CRIP1P50238 77 aa14.53□□□□□ -0.08
UPF1-210ENST00000600689 PRELID3AQ96N28 172 aa14.53□□□□□ -0.08
UPF1-210ENST00000600689 DKK2Q9UBU2 259 aa14.53□□□□□ -0.08
UPF1-210ENST00000600689 SPCS1Q9Y6A9 102 aa14.53□□□□□ -0.08
UPF1-210ENST00000600689 A0A096LNJ9 63 aa14.53□□□□□ -0.08
UPF1-210ENST00000600689 TRGV9Q99603 122 aa14.53□□□□□ -0.08
UPF1-210ENST00000600689 OTORQ9NRC9 128 aa14.53□□□□□ -0.08
UPF1-210ENST00000600689 K7ERJ3 54 aa14.52□□□□□ -0.08
UPF1-210ENST00000600689 NDUFB3O43676 98 aa14.52□□□□□ -0.08
UPF1-210ENST00000600689 FCGR2BP31994 310 aaPredicted RBP14.52□□□□□ -0.08
UPF1-210ENST00000600689 MEF2CQ06413 473 aaPredicted RBP14.52□□□□□ -0.08
UPF1-210ENST00000600689 OR4A5Q8NH83 315 aa14.52□□□□□ -0.08
UPF1-210ENST00000600689 GFRA4Q9GZZ7 299 aa14.52□□□□□ -0.08
UPF1-210ENST00000600689 A6NDN8 102 aa14.52□□□□□ -0.08
UPF1-210ENST00000600689 FAM57AQ8TBR7 257 aa14.52□□□□□ -0.08
UPF1-210ENST00000600689 ABCA4P78363 2273 aa14.52□□□□□ -0.09
UPF1-210ENST00000600689 C9orf118A6NHY6 69 aa14.52□□□□□ -0.09
UPF1-210ENST00000600689 FGF6P10767 208 aa14.52□□□□□ -0.09
UPF1-210ENST00000600689 CD40P25942 277 aa14.52□□□□□ -0.09
UPF1-210ENST00000600689 GATA4P43694 442 aa14.52□□□□□ -0.09
UPF1-210ENST00000600689 CNIH1O95406 144 aa14.51□□□□□ -0.09
UPF1-210ENST00000600689 ZNF414Q96IQ9 312 aa14.51□□□□□ -0.09
UPF1-210ENST00000600689 PPIAL4EA0A075B759 164 aa14.51□□□□□ -0.09
UPF1-210ENST00000600689 IGHV3-35A0A0C4DH35 117 aa14.51□□□□□ -0.09
UPF1-210ENST00000600689 GNG7O60262 68 aa14.51□□□□□ -0.09
UPF1-210ENST00000600689 PPIAL4FP0DN26 164 aa14.51□□□□□ -0.09
UPF1-210ENST00000600689 SEC11AP67812 179 aa14.51□□□□□ -0.09
UPF1-210ENST00000600689 MRGPRG-AS1Q2M3A8 158 aa14.51□□□□□ -0.09
UPF1-210ENST00000600689 CT45A10P0DMU9 189 aa14.5□□□□□ -0.09
UPF1-210ENST00000600689 NBL1P41271 181 aa14.5□□□□□ -0.09
UPF1-210ENST00000600689 Q8TAT8 98 aa14.5□□□□□ -0.09
UPF1-210ENST00000600689 TMEM186Q96B77 213 aa14.5□□□□□ -0.09
UPF1-210ENST00000600689 SMIM12Q96EX1 92 aa14.5□□□□□ -0.09
UPF1-210ENST00000600689 CTSZQ9UBR2 303 aa14.5□□□□□ -0.09
UPF1-210ENST00000600689 NBASA2RRP1 2371 aa14.5□□□□□ -0.09
UPF1-210ENST00000600689 A0A0G2JNJ9 132 aa14.5□□□□□ -0.09
UPF1-210ENST00000600689 IL4P05112 153 aa14.5□□□□□ -0.09
UPF1-210ENST00000600689 Q9UFV3 132 aa14.5□□□□□ -0.09
UPF1-210ENST00000600689 NPIPB6E9PJ23 425 aa14.5□□□□□ -0.09
UPF1-210ENST00000600689 IGHV3-23P01764 117 aa14.5□□□□□ -0.09
UPF1-210ENST00000600689 PPIFP30405 207 aaKnown RBP14.5□□□□□ -0.09
UPF1-210ENST00000600689 ASCL5Q7RTU5 278 aa14.5□□□□□ -0.09
UPF1-210ENST00000600689 MTURNQ8N3F0 131 aa14.5□□□□□ -0.09
UPF1-210ENST00000600689 TMEM75Q8N9X5 138 aa14.5□□□□□ -0.09
UPF1-210ENST00000600689 LRBAP50851 2863 aa14.5□□□□□ -0.09
UPF1-210ENST00000600689 TLN1Q9Y490 2541 aaKnown RBP14.49□□□□□ -0.09
UPF1-210ENST00000600689 LYNX1G3V0Z9 82 aa14.49□□□□□ -0.09
UPF1-210ENST00000600689 LYNX1P0DP58 116 aa14.49□□□□□ -0.09
UPF1-210ENST00000600689 PLP1P60201 277 aa14.49□□□□□ -0.09
UPF1-210ENST00000600689 NGBQ9NPG2 151 aa14.49□□□□□ -0.09
UPF1-210ENST00000600689 IGKV2-40A0A087WW87 121 aaPredicted RBP14.49□□□□□ -0.09
UPF1-210ENST00000600689 SMAD7O15105 426 aaKnown RBP14.49□□□□□ -0.09
UPF1-210ENST00000600689 GAS8-AS1O95177 125 aa14.49□□□□□ -0.09
UPF1-210ENST00000600689 IGKV2D-40P01614 121 aaPredicted RBP14.49□□□□□ -0.09
UPF1-210ENST00000600689 EVI2AP22794 236 aa14.49□□□□□ -0.09
UPF1-210ENST00000600689 CKS2P33552 79 aa14.49□□□□□ -0.09
UPF1-210ENST00000600689 PAX2Q02962 417 aa14.49□□□□□ -0.09
UPF1-210ENST00000600689 TWIST1Q15672 202 aa14.49□□□□□ -0.09
UPF1-210ENST00000600689 PRR30Q53SZ7 412 aaPredicted RBP14.49□□□□□ -0.09
UPF1-210ENST00000600689 NCOR1P1Q9H4R4 102 aa14.49□□□□□ -0.09
UPF1-210ENST00000600689 INSIG2Q9Y5U4 225 aa14.49□□□□□ -0.09
UPF1-210ENST00000600689 K7EP34 96 aa14.48□□□□□ -0.09
UPF1-210ENST00000600689 CRYGCP07315 174 aa14.48□□□□□ -0.09
UPF1-210ENST00000600689 TMEM189A5PLL7 270 aa14.47□□□□□ -0.09
UPF1-210ENST00000600689 OVOL3O00110 214 aa14.47□□□□□ -0.09
UPF1-210ENST00000600689 NPYP01303 97 aa14.47□□□□□ -0.09
UPF1-210ENST00000600689 Q8NA96 180 aa14.47□□□□□ -0.09
UPF1-210ENST00000600689 IFI27L1Q96BM0 104 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms