RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 PAXXQ9BUH6 204 aa14.9□□□□□ -0.02
SHKBP1-222ENST00000600320 MAP6D1Q9H9H5 199 aa14.9□□□□□ -0.02
SHKBP1-222ENST00000600320 DNAH3Q8TD57 4116 aa14.89□□□□□ -0.03
SHKBP1-222ENST00000600320 SLC17A3O00476 420 aa14.89□□□□□ -0.03
SHKBP1-222ENST00000600320 OR7C2O60412 319 aa14.89□□□□□ -0.03
SHKBP1-222ENST00000600320 OR10J4P0C629 311 aa14.89□□□□□ -0.03
SHKBP1-222ENST00000600320 STAG3L2P0CL84 134 aa14.89□□□□□ -0.03
SHKBP1-222ENST00000600320 STAG3L3P0CL85 134 aa14.89□□□□□ -0.03
SHKBP1-222ENST00000600320 HIST1H1EP10412 219 aaKnown RBP14.89□□□□□ -0.03
SHKBP1-222ENST00000600320 HRH4Q9H3N8 390 aa14.89□□□□□ -0.03
SHKBP1-222ENST00000600320 CTXND1A0A1B0GTU2 59 aa14.88□□□□□ -0.03
SHKBP1-222ENST00000600320 HLA-DMBP28068 263 aa14.88□□□□□ -0.03
SHKBP1-222ENST00000600320 MEOX2P50222 304 aa14.88□□□□□ -0.03
SHKBP1-222ENST00000600320 DEFB131AP59861 70 aa14.88□□□□□ -0.03
SHKBP1-222ENST00000600320 ZNF124Q15973 351 aa14.88□□□□□ -0.03
SHKBP1-222ENST00000600320 RNF141Q8WVD5 230 aa14.88□□□□□ -0.03
SHKBP1-222ENST00000600320 SAT2Q96F10 170 aaPredicted RBP14.88□□□□□ -0.03
SHKBP1-222ENST00000600320 C16orf92Q96LL3 132 aa14.88□□□□□ -0.03
SHKBP1-222ENST00000600320 C20orf173Q96LM9 149 aa14.88□□□□□ -0.03
SHKBP1-222ENST00000600320 MEGF8Q7Z7M0 2845 aa14.88□□□□□ -0.03
SHKBP1-222ENST00000600320 UMAD1C9J7I0 102 aa14.87□□□□□ -0.03
SHKBP1-222ENST00000600320 ARL14EPLP0DKL9 152 aa14.87□□□□□ -0.03
SHKBP1-222ENST00000600320 UBE2L3P68036 154 aaKnown RBP14.87□□□□□ -0.03
SHKBP1-222ENST00000600320 FAM74A1Q5RGS3 127 aa14.87□□□□□ -0.03
SHKBP1-222ENST00000600320 EIF5AL1Q6IS14 154 aaKnown RBP14.87□□□□□ -0.03
SHKBP1-222ENST00000600320 DEFB125Q8N687 156 aa14.87□□□□□ -0.03
SHKBP1-222ENST00000600320 FAM213BQ8TBF2 198 aa14.87□□□□□ -0.03
SHKBP1-222ENST00000600320 ZNF331Q9NQX6 463 aaPredicted RBP14.87□□□□□ -0.03
SHKBP1-222ENST00000600320 NOTCH1P46531 2555 aa14.87□□□□□ -0.03
SHKBP1-222ENST00000600320 TRBV19A0A075B6N1 114 aa14.86□□□□□ -0.03
SHKBP1-222ENST00000600320 OR11H12B2RN74 326 aa14.86□□□□□ -0.03
SHKBP1-222ENST00000600320 ISLRO14498 428 aa14.86□□□□□ -0.03
SHKBP1-222ENST00000600320 NDUFB4O95168 129 aa14.86□□□□□ -0.03
SHKBP1-222ENST00000600320 NBEAP1P0C6P0 100 aa14.86□□□□□ -0.03
SHKBP1-222ENST00000600320 PSMB3P49720 205 aa14.86□□□□□ -0.03
SHKBP1-222ENST00000600320 SULT1A2P50226 295 aa14.86□□□□□ -0.03
SHKBP1-222ENST00000600320 DEFA6Q01524 100 aa14.86□□□□□ -0.03
SHKBP1-222ENST00000600320 PSMG4Q5JS54 123 aa14.86□□□□□ -0.03
SHKBP1-222ENST00000600320 LCN15Q6UWW0 184 aa14.86□□□□□ -0.03
SHKBP1-222ENST00000600320 PQLC2Q6ZP29 291 aa14.86□□□□□ -0.03
SHKBP1-222ENST00000600320 APRG1Q8IVJ8 170 aa14.86□□□□□ -0.03
SHKBP1-222ENST00000600320 RNF182Q8N6D2 247 aa14.86□□□□□ -0.03
SHKBP1-222ENST00000600320 BLNKQ8WV28 456 aa14.86□□□□□ -0.03
SHKBP1-222ENST00000600320 LINC00052Q96N35 136 aa14.86□□□□□ -0.03
SHKBP1-222ENST00000600320 CITED4Q96RK1 184 aa14.86□□□□□ -0.03
SHKBP1-222ENST00000600320 ID1P41134 155 aa14.85□□□□□ -0.03
SHKBP1-222ENST00000600320 FGF8P55075 233 aaPredicted RBP14.85□□□□□ -0.03
SHKBP1-222ENST00000600320 DEFB1P60022 68 aa14.85□□□□□ -0.03
SHKBP1-222ENST00000600320 ALKAL2Q6UX46 152 aa14.85□□□□□ -0.03
SHKBP1-222ENST00000600320 FAM110AQ9BQ89 295 aa14.85□□□□□ -0.03
SHKBP1-222ENST00000600320 MAP1LC3B2A6NCE7 125 aa14.84□□□□□ -0.03
SHKBP1-222ENST00000600320 PRB4P10163 310 aaPredicted RBP14.84□□□□□ -0.03
SHKBP1-222ENST00000600320 GCHFRP30047 84 aa14.84□□□□□ -0.03
SHKBP1-222ENST00000600320 CMC4P56277 68 aaPredicted RBP14.84□□□□□ -0.03
SHKBP1-222ENST00000600320 SNRPD3P62318 126 aaKnown RBP14.84□□□□□ -0.03
SHKBP1-222ENST00000600320 GUK1Q16774 197 aa14.84□□□□□ -0.03
SHKBP1-222ENST00000600320 SAMD13Q5VXD3 122 aa14.84□□□□□ -0.03
SHKBP1-222ENST00000600320 LRRC20Q8TCA0 184 aa14.84□□□□□ -0.03
SHKBP1-222ENST00000600320 PHYHIPLQ96FC7 376 aa14.84□□□□□ -0.03
SHKBP1-222ENST00000600320 SLC50A1Q9BRV3 221 aa14.84□□□□□ -0.03
SHKBP1-222ENST00000600320 MAP1LC3BQ9GZQ8 125 aa14.84□□□□□ -0.03
SHKBP1-222ENST00000600320 ZNF253O75346 499 aa14.83□□□□□ -0.04
SHKBP1-222ENST00000600320 CXorf1O96002 111 aa14.83□□□□□ -0.04
SHKBP1-222ENST00000600320 DPPA3Q6W0C5 159 aa14.83□□□□□ -0.04
SHKBP1-222ENST00000600320 KNCNA6PVL3 124 aa14.82□□□□□ -0.04
SHKBP1-222ENST00000600320 IGHV4-30-4P0DP06 118 aa14.82□□□□□ -0.04
SHKBP1-222ENST00000600320 RAB5CP51148 216 aa14.82□□□□□ -0.04
SHKBP1-222ENST00000600320 EXOC3-AS1Q8N2X6 119 aa14.82□□□□□ -0.04
SHKBP1-222ENST00000600320 MBD3L1Q8WWY6 194 aa14.82□□□□□ -0.04
SHKBP1-222ENST00000600320 TMPRSS5Q9H3S3 457 aa14.82□□□□□ -0.04
SHKBP1-222ENST00000600320 SRD5A3Q9H8P0 318 aa14.82□□□□□ -0.04
SHKBP1-222ENST00000600320 PDE6HQ13956 83 aa14.81□□□□□ -0.04
SHKBP1-222ENST00000600320 PSG3Q16557 428 aa14.81□□□□□ -0.04
SHKBP1-222ENST00000600320 SUN5Q8TC36 379 aa14.81□□□□□ -0.04
SHKBP1-222ENST00000600320 A0A1B0GV50 99 aa14.8□□□□□ -0.04
SHKBP1-222ENST00000600320 F6UB75 175 aa14.8□□□□□ -0.04
SHKBP1-222ENST00000600320 GDF5OSQ5U4N7 250 aa14.8□□□□□ -0.04
SHKBP1-222ENST00000600320 IQCF2Q8IXL9 164 aa14.8□□□□□ -0.04
SHKBP1-222ENST00000600320 MRAPQ8TCY5 172 aa14.8□□□□□ -0.04
SHKBP1-222ENST00000600320 SFT2D1Q8WV19 159 aa14.8□□□□□ -0.04
SHKBP1-222ENST00000600320 RBMY1BA6NDE4 496 aaKnown RBP14.79□□□□□ -0.04
SHKBP1-222ENST00000600320 RBMY1EA6NEQ0 496 aaKnown RBP14.79□□□□□ -0.04
SHKBP1-222ENST00000600320 ZNF705FA8MVS1 300 aaPredicted RBP14.79□□□□□ -0.04
SHKBP1-222ENST00000600320 M0R3E3 92 aa14.79□□□□□ -0.04
SHKBP1-222ENST00000600320 H2AFB1P0C5Y9 115 aa14.79□□□□□ -0.04
SHKBP1-222ENST00000600320 RBMY1DP0C7P1 496 aaKnown RBP14.79□□□□□ -0.04
SHKBP1-222ENST00000600320 RANP62826 216 aaKnown RBP14.79□□□□□ -0.04
SHKBP1-222ENST00000600320 ZNF738Q8NE65 137 aa14.79□□□□□ -0.04
SHKBP1-222ENST00000600320 Q9H3A6 140 aa14.79□□□□□ -0.04
SHKBP1-222ENST00000600320 A8MZ25 164 aa14.78□□□□□ -0.04
SHKBP1-222ENST00000600320 PRAC2D3DTV9 90 aa14.78□□□□□ -0.04
SHKBP1-222ENST00000600320 PSG9Q00887 426 aa14.78□□□□□ -0.04
SHKBP1-222ENST00000600320 ICAM4Q14773 271 aa14.78□□□□□ -0.04
SHKBP1-222ENST00000600320 DEFB121Q5J5C9 76 aa14.78□□□□□ -0.04
SHKBP1-222ENST00000600320 ACTL10Q5JWF8 245 aa14.78□□□□□ -0.04
SHKBP1-222ENST00000600320 TMEM167BQ9NRX6 74 aa14.78□□□□□ -0.04
SHKBP1-222ENST00000600320 AGRNO00468 2067 aa14.77□□□□□ -0.04
SHKBP1-222ENST00000600320 ZNF705EA8MWA4 302 aaPredicted RBP14.77□□□□□ -0.05
SHKBP1-222ENST00000600320 LINC00322Q6ZN03 302 aaPredicted RBP14.77□□□□□ -0.05
SHKBP1-222ENST00000600320 RPUSD4Q96CM3 377 aaKnown RBP14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms