RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 SLC50A1Q9BRV3 221 aa12.46□□□□□ -0.41
USHBP1-210ENST00000600286 SLC25A2Q9BXI2 301 aa12.46□□□□□ -0.41
USHBP1-210ENST00000600286 K7EIL1 84 aa12.45□□□□□ -0.42
USHBP1-210ENST00000600286 PSG9Q00887 426 aa12.45□□□□□ -0.42
USHBP1-210ENST00000600286 RPP25LQ8N5L8 163 aaKnown RBP12.45□□□□□ -0.42
USHBP1-210ENST00000600286 DEFB125Q8N687 156 aa12.45□□□□□ -0.42
USHBP1-210ENST00000600286 RNF141Q8WVD5 230 aa12.45□□□□□ -0.42
USHBP1-210ENST00000600286 MAP6D1Q9H9H5 199 aa12.45□□□□□ -0.42
USHBP1-210ENST00000600286 RPRMQ9NS64 109 aa12.45□□□□□ -0.42
USHBP1-210ENST00000600286 MRPS12O15235 138 aaKnown RBP12.44□□□□□ -0.42
USHBP1-210ENST00000600286 NBEAP1P0C6P0 100 aa12.44□□□□□ -0.42
USHBP1-210ENST00000600286 NKX2-5P52952 324 aaPredicted RBP12.44□□□□□ -0.42
USHBP1-210ENST00000600286 PDE6HQ13956 83 aa12.44□□□□□ -0.42
USHBP1-210ENST00000600286 ODF3L2Q3SX64 289 aa12.44□□□□□ -0.42
USHBP1-210ENST00000600286 RAB24Q969Q5 203 aa12.44□□□□□ -0.42
USHBP1-210ENST00000600286 FAM167A-AS1Q96KT0 104 aa12.44□□□□□ -0.42
USHBP1-210ENST00000600286 AAMDCQ9H7C9 122 aa12.44□□□□□ -0.42
USHBP1-210ENST00000600286 SRD5A3Q9H8P0 318 aa12.44□□□□□ -0.42
USHBP1-210ENST00000600286 CTXND1A0A1B0GTU2 59 aa12.43□□□□□ -0.42
USHBP1-210ENST00000600286 ZNF253O75346 499 aa12.43□□□□□ -0.42
USHBP1-210ENST00000600286 CXorf1O96002 111 aa12.43□□□□□ -0.42
USHBP1-210ENST00000600286 IGLC2P0DOY2 106 aa12.43□□□□□ -0.42
USHBP1-210ENST00000600286 IGHV4-30-4P0DP06 118 aa12.43□□□□□ -0.42
USHBP1-210ENST00000600286 PYYP10082 97 aa12.43□□□□□ -0.42
USHBP1-210ENST00000600286 RAB5CP51148 216 aa12.43□□□□□ -0.42
USHBP1-210ENST00000600286 UBE2L3P68036 154 aaKnown RBP12.43□□□□□ -0.42
USHBP1-210ENST00000600286 EBLN2Q6P2I7 272 aa12.43□□□□□ -0.42
USHBP1-210ENST00000600286 DPPA3Q6W0C5 159 aa12.43□□□□□ -0.42
USHBP1-210ENST00000600286 STHQ8IWL8 128 aa12.43□□□□□ -0.42
USHBP1-210ENST00000600286 BLNKQ8WV28 456 aa12.43□□□□□ -0.42
USHBP1-210ENST00000600286 TRBV19A0A075B6N1 114 aa12.42□□□□□ -0.42
USHBP1-210ENST00000600286 A8MZ25 164 aa12.42□□□□□ -0.42
USHBP1-210ENST00000600286 H3BQ15 152 aa12.42□□□□□ -0.42
USHBP1-210ENST00000600286 SNRPCP09234 159 aaKnown RBP12.42□□□□□ -0.42
USHBP1-210ENST00000600286 OR10J4P0C629 311 aa12.42□□□□□ -0.42
USHBP1-210ENST00000600286 APRG1Q8IVJ8 170 aa12.42□□□□□ -0.42
USHBP1-210ENST00000600286 FAM24BQ8N5W8 94 aa12.42□□□□□ -0.42
USHBP1-210ENST00000600286 TMED6Q8WW62 240 aa12.42□□□□□ -0.42
USHBP1-210ENST00000600286 C19orf73Q9NVV2 129 aa12.42□□□□□ -0.42
USHBP1-210ENST00000600286 ZNF586Q9NXT0 402 aa12.42□□□□□ -0.42
USHBP1-210ENST00000600286 PRELID1Q9Y255 219 aa12.42□□□□□ -0.42
USHBP1-210ENST00000600286 TEX46H3BTG2 121 aa12.41□□□□□ -0.42
USHBP1-210ENST00000600286 SOCS3O14543 225 aa12.41□□□□□ -0.42
USHBP1-210ENST00000600286 HMGB3O15347 200 aaKnown RBP12.41□□□□□ -0.42
USHBP1-210ENST00000600286 STAG3L2P0CL84 134 aa12.41□□□□□ -0.42
USHBP1-210ENST00000600286 STAG3L3P0CL85 134 aa12.41□□□□□ -0.42
USHBP1-210ENST00000600286 PSG3Q16557 428 aa12.41□□□□□ -0.42
USHBP1-210ENST00000600286 FAM74A1Q5RGS3 127 aa12.41□□□□□ -0.42
USHBP1-210ENST00000600286 IQCF2Q8IXL9 164 aa12.41□□□□□ -0.42
USHBP1-210ENST00000600286 ZNF738Q8NE65 137 aa12.41□□□□□ -0.42
USHBP1-210ENST00000600286 C17orf77Q96MU5 243 aa12.41□□□□□ -0.42
USHBP1-210ENST00000600286 ZNF331Q9NQX6 463 aaPredicted RBP12.41□□□□□ -0.42
USHBP1-210ENST00000600286 TMEM167BQ9NRX6 74 aa12.41□□□□□ -0.42
USHBP1-210ENST00000600286 LOC102724200A0A096LPH7 203 aaPredicted RBP12.4□□□□□ -0.42
USHBP1-210ENST00000600286 H3BTX0 84 aa12.4□□□□□ -0.42
USHBP1-210ENST00000600286 LYPD1Q8N2G4 141 aa12.4□□□□□ -0.42
USHBP1-210ENST00000600286 FAM213BQ8TBF2 198 aa12.4□□□□□ -0.42
USHBP1-210ENST00000600286 PHYHIPLQ96FC7 376 aa12.4□□□□□ -0.42
USHBP1-210ENST00000600286 WFDC10AQ9H1F0 79 aa12.4□□□□□ -0.42
USHBP1-210ENST00000600286 ARL14EPLP0DKL9 152 aa12.39□□□□□ -0.43
USHBP1-210ENST00000600286 CSN1S1P47710 185 aa12.39□□□□□ -0.43
USHBP1-210ENST00000600286 APOC4P55056 127 aa12.39□□□□□ -0.43
USHBP1-210ENST00000600286 ACTL10Q5JWF8 245 aa12.39□□□□□ -0.43
USHBP1-210ENST00000600286 FOXI2Q6ZQN5 318 aa12.39□□□□□ -0.43
USHBP1-210ENST00000600286 FXYD5Q96DB9 178 aa12.39□□□□□ -0.43
USHBP1-210ENST00000600286 SAT2Q96F10 170 aaPredicted RBP12.39□□□□□ -0.43
USHBP1-210ENST00000600286 MAP1LC3B2A6NCE7 125 aa12.38□□□□□ -0.43
USHBP1-210ENST00000600286 DUSP14O95147 198 aaKnown RBP12.38□□□□□ -0.43
USHBP1-210ENST00000600286 H2AFB1P0C5Y9 115 aa12.38□□□□□ -0.43
USHBP1-210ENST00000600286 FRMD6-AS1P0C7T7 363 aa12.38□□□□□ -0.43
USHBP1-210ENST00000600286 GCHFRP30047 84 aa12.38□□□□□ -0.43
USHBP1-210ENST00000600286 NUTF2P61970 127 aaKnown RBP12.38□□□□□ -0.43
USHBP1-210ENST00000600286 RANP62826 216 aaKnown RBP12.38□□□□□ -0.43
USHBP1-210ENST00000600286 IGFL4Q6B9Z1 124 aa12.38□□□□□ -0.43
USHBP1-210ENST00000600286 RNF182Q8N6D2 247 aa12.38□□□□□ -0.43
USHBP1-210ENST00000600286 SFT2D1Q8WV19 159 aa12.38□□□□□ -0.43
USHBP1-210ENST00000600286 MAP1LC3BQ9GZQ8 125 aa12.38□□□□□ -0.43
USHBP1-210ENST00000600286 DNAH9Q9NYC9 4486 aa12.38□□□□□ -0.43
USHBP1-210ENST00000600286 TRAV8-2A0A0B4J237 113 aa12.37□□□□□ -0.43
USHBP1-210ENST00000600286 KNCNA6PVL3 124 aa12.37□□□□□ -0.43
USHBP1-210ENST00000600286 EIF3GO75821 320 aaKnown RBP eCLIP12.37□□□□□ -0.43
USHBP1-210ENST00000600286 OR10J6PQ8NGY7 276 aa12.37□□□□□ -0.43
USHBP1-210ENST00000600286 RPUSD4Q96CM3 377 aaKnown RBP12.37□□□□□ -0.43
USHBP1-210ENST00000600286 MRPL53Q96EL3 112 aaKnown RBP12.37□□□□□ -0.43
USHBP1-210ENST00000600286 SAV1Q9H4B6 383 aaPredicted RBP12.37□□□□□ -0.43
USHBP1-210ENST00000600286 PPP1R14DQ9NXH3 145 aa12.37□□□□□ -0.43
USHBP1-210ENST00000600286 SLC17A3O00476 420 aa12.36□□□□□ -0.43
USHBP1-210ENST00000600286 RPL35AP18077 110 aaKnown RBP12.36□□□□□ -0.43
USHBP1-210ENST00000600286 SULT1A2P50226 295 aa12.36□□□□□ -0.43
USHBP1-210ENST00000600286 ICAM4Q14773 271 aa12.36□□□□□ -0.43
USHBP1-210ENST00000600286 ZNF124Q15973 351 aa12.36□□□□□ -0.43
USHBP1-210ENST00000600286 OR4B1Q8NGF8 309 aa12.36□□□□□ -0.43
USHBP1-210ENST00000600286 CMTM2Q8TAZ6 248 aa12.36□□□□□ -0.43
USHBP1-210ENST00000600286 RXFP4Q8TDU9 374 aa12.36□□□□□ -0.43
USHBP1-210ENST00000600286 ZNF503Q96F45 646 aa12.36□□□□□ -0.43
USHBP1-210ENST00000600286 C20orf173Q96LM9 149 aa12.36□□□□□ -0.43
USHBP1-210ENST00000600286 BOLA1Q9Y3E2 137 aa12.36□□□□□ -0.43
USHBP1-210ENST00000600286 COL7A1Q02388 2944 aa12.36□□□□□ -0.43
USHBP1-210ENST00000600286 KIR2DL5BA0A0G2JN68 375 aa12.35□□□□□ -0.43
USHBP1-210ENST00000600286 KIR2DL5BA0A0G2JPC4 375 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms