RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 LGALSLQ3ZCW2 172 aaPredicted RBP13.43□□□□□ -0.26
LIG1-216ENST00000598938 CASC10Q5T4H9 136 aa13.43□□□□□ -0.26
LIG1-216ENST00000598938 MUC7Q8TAX7 377 aa13.43□□□□□ -0.26
LIG1-216ENST00000598938 HRH4Q9H3N8 390 aa13.43□□□□□ -0.26
LIG1-216ENST00000598938 KANTRA0A1W2PQU2 76 aa13.42□□□□□ -0.26
LIG1-216ENST00000598938 LCN15Q6UWW0 184 aa13.42□□□□□ -0.26
LIG1-216ENST00000598938 OR10G4Q8NGN3 311 aa13.42□□□□□ -0.26
LIG1-216ENST00000598938 OR10G9Q8NGN4 311 aa13.42□□□□□ -0.26
LIG1-216ENST00000598938 OR10G7Q8NGN6 311 aa13.42□□□□□ -0.26
LIG1-216ENST00000598938 C20orf173Q96LM9 149 aa13.42□□□□□ -0.26
LIG1-216ENST00000598938 TENM2Q9NT68 2774 aa13.42□□□□□ -0.26
LIG1-216ENST00000598938 LOC102724200A0A096LPH7 203 aaPredicted RBP13.41□□□□□ -0.26
LIG1-216ENST00000598938 MBP02144 154 aa13.41□□□□□ -0.26
LIG1-216ENST00000598938 SNRPCP09234 159 aaKnown RBP13.41□□□□□ -0.26
LIG1-216ENST00000598938 PYYP10082 97 aa13.41□□□□□ -0.26
LIG1-216ENST00000598938 GUK1Q16774 197 aa13.41□□□□□ -0.26
LIG1-216ENST00000598938 SBSPONQ8IVN8 264 aa13.41□□□□□ -0.26
LIG1-216ENST00000598938 SAT2Q96F10 170 aaPredicted RBP13.41□□□□□ -0.26
LIG1-216ENST00000598938 LINC00052Q96N35 136 aa13.41□□□□□ -0.26
LIG1-216ENST00000598938 ZNF586Q9NXT0 402 aa13.41□□□□□ -0.26
LIG1-216ENST00000598938 BIRC6Q9NR09 4857 aa13.41□□□□□ -0.26
LIG1-216ENST00000598938 KNCNA6PVL3 124 aa13.4□□□□□ -0.26
LIG1-216ENST00000598938 SLC17A3O00476 420 aa13.4□□□□□ -0.26
LIG1-216ENST00000598938 PFDN1O60925 122 aa13.4□□□□□ -0.26
LIG1-216ENST00000598938 HIST1H1EP10412 219 aaKnown RBP13.4□□□□□ -0.26
LIG1-216ENST00000598938 SPP1P10451 314 aa13.4□□□□□ -0.26
LIG1-216ENST00000598938 HAGHQ16775 308 aa13.4□□□□□ -0.26
LIG1-216ENST00000598938 ZFP69Q49AA0 526 aa13.4□□□□□ -0.26
LIG1-216ENST00000598938 IGFL4Q6B9Z1 124 aa13.4□□□□□ -0.26
LIG1-216ENST00000598938 FAM122CQ6P4D5 195 aa13.4□□□□□ -0.26
LIG1-216ENST00000598938 RPP25LQ8N5L8 163 aaKnown RBP13.4□□□□□ -0.26
LIG1-216ENST00000598938 LRRC20Q8TCA0 184 aa13.4□□□□□ -0.26
LIG1-216ENST00000598938 ZNF503Q96F45 646 aa13.4□□□□□ -0.26
LIG1-216ENST00000598938 ASCL2Q99929 193 aa13.4□□□□□ -0.26
LIG1-216ENST00000598938 SLC50A1Q9BRV3 221 aa13.4□□□□□ -0.26
LIG1-216ENST00000598938 ZNF471Q9BX82 626 aaPredicted RBP13.4□□□□□ -0.26
LIG1-216ENST00000598938 OR51M1Q9H341 326 aa13.4□□□□□ -0.26
LIG1-216ENST00000598938 ZNF331Q9NQX6 463 aaPredicted RBP13.4□□□□□ -0.26
LIG1-216ENST00000598938 HUWE1Q7Z6Z7 4374 aaKnown RBP13.4□□□□□ -0.26
LIG1-216ENST00000598938 EPPK1P58107 5090 aaKnown RBP13.39□□□□□ -0.27
LIG1-216ENST00000598938 TRBV19A0A075B6N1 114 aa13.39□□□□□ -0.27
LIG1-216ENST00000598938 A0A1W2PPV4 95 aa13.39□□□□□ -0.27
LIG1-216ENST00000598938 H3BTX0 84 aa13.39□□□□□ -0.27
LIG1-216ENST00000598938 ZNF253O75346 499 aa13.39□□□□□ -0.27
LIG1-216ENST00000598938 TAS2R45P59539 299 aa13.39□□□□□ -0.27
LIG1-216ENST00000598938 KHDC3LQ587J8 217 aa13.39□□□□□ -0.27
LIG1-216ENST00000598938 TMEM41BQ5BJD5 291 aa13.39□□□□□ -0.27
LIG1-216ENST00000598938 RNF182Q8N6D2 247 aa13.39□□□□□ -0.27
LIG1-216ENST00000598938 PAXXQ9BUH6 204 aa13.39□□□□□ -0.27
LIG1-216ENST00000598938 RPRMQ9NS64 109 aa13.39□□□□□ -0.27
LIG1-216ENST00000598938 DYNC2H1Q8NCM8 4307 aaKnown RBP13.38□□□□□ -0.27
LIG1-216ENST00000598938 OR7C2O60412 319 aa13.38□□□□□ -0.27
LIG1-216ENST00000598938 EIF3GO75821 320 aaKnown RBP eCLIP13.38□□□□□ -0.27
LIG1-216ENST00000598938 RPL35AP18077 110 aaKnown RBP13.38□□□□□ -0.27
LIG1-216ENST00000598938 CDC34P49427 236 aaPredicted RBP13.38□□□□□ -0.27
LIG1-216ENST00000598938 PDE6HQ13956 83 aa13.38□□□□□ -0.27
LIG1-216ENST00000598938 ACTL10Q5JWF8 245 aa13.38□□□□□ -0.27
LIG1-216ENST00000598938 FOXI2Q6ZQN5 318 aa13.38□□□□□ -0.27
LIG1-216ENST00000598938 TRPT1Q86TN4 253 aaKnown RBP13.38□□□□□ -0.27
LIG1-216ENST00000598938 STHQ8IWL8 128 aa13.38□□□□□ -0.27
LIG1-216ENST00000598938 C9orf62Q8N4C0 152 aa13.38□□□□□ -0.27
LIG1-216ENST00000598938 RNF141Q8WVD5 230 aa13.38□□□□□ -0.27
LIG1-216ENST00000598938 FXYD5Q96DB9 178 aa13.38□□□□□ -0.27
LIG1-216ENST00000598938 SAV1Q9H4B6 383 aaPredicted RBP13.38□□□□□ -0.27
LIG1-216ENST00000598938 KIR2DL5BA0A0G2JN68 375 aa13.37□□□□□ -0.27
LIG1-216ENST00000598938 KIR2DL5BA0A0G2JPC4 375 aa13.37□□□□□ -0.27
LIG1-216ENST00000598938 NDUFB4O95168 129 aa13.37□□□□□ -0.27
LIG1-216ENST00000598938 HLA-DRB4P13762 266 aa13.37□□□□□ -0.27
LIG1-216ENST00000598938 HLA-DMBP28068 263 aa13.37□□□□□ -0.27
LIG1-216ENST00000598938 DEFB1P60022 68 aa13.37□□□□□ -0.27
LIG1-216ENST00000598938 EIF5AP63241 154 aaKnown RBP13.37□□□□□ -0.27
LIG1-216ENST00000598938 PSG3Q16557 428 aa13.37□□□□□ -0.27
LIG1-216ENST00000598938 KIR2DL5AQ8N109 375 aa13.37□□□□□ -0.27
LIG1-216ENST00000598938 KIR2DL5BQ8NHK3 375 aa13.37□□□□□ -0.27
LIG1-216ENST00000598938 STOML3Q8TAV4 291 aa13.37□□□□□ -0.27
LIG1-216ENST00000598938 TM2D3Q9BRN9 247 aa13.37□□□□□ -0.27
LIG1-216ENST00000598938 HLA-DRB4X5D2U9 266 aa13.37□□□□□ -0.27
LIG1-216ENST00000598938 LCE6AA0A183 80 aa13.36□□□□□ -0.27
LIG1-216ENST00000598938 H3BMM0 161 aa13.36□□□□□ -0.27
LIG1-216ENST00000598938 OR10J4P0C629 311 aa13.36□□□□□ -0.27
LIG1-216ENST00000598938 NBEAP1P0C6P0 100 aa13.36□□□□□ -0.27
LIG1-216ENST00000598938 SEC11BP0C7V7 166 aa13.36□□□□□ -0.27
LIG1-216ENST00000598938 TPT1P13693 172 aaKnown RBP13.36□□□□□ -0.27
LIG1-216ENST00000598938 APOC4P55056 127 aa13.36□□□□□ -0.27
LIG1-216ENST00000598938 AKR1C8PQ5T2L2 129 aa13.36□□□□□ -0.27
LIG1-216ENST00000598938 GDF5OSQ5U4N7 250 aa13.36□□□□□ -0.27
LIG1-216ENST00000598938 PQLC2Q6ZP29 291 aa13.36□□□□□ -0.27
LIG1-216ENST00000598938 BAP18Q8IXM2 172 aa13.36□□□□□ -0.27
LIG1-216ENST00000598938 RAB24Q969Q5 203 aa13.36□□□□□ -0.27
LIG1-216ENST00000598938 ACTR3CQ9C0K3 210 aaPredicted RBP13.36□□□□□ -0.27
LIG1-216ENST00000598938 CLEC5AQ9NY25 188 aa13.36□□□□□ -0.27
LIG1-216ENST00000598938 A0A0J9YX75 114 aa13.35□□□□□ -0.27
LIG1-216ENST00000598938 F6UB75 175 aa13.35□□□□□ -0.27
LIG1-216ENST00000598938 STAG3L2P0CL84 134 aa13.35□□□□□ -0.27
LIG1-216ENST00000598938 STAG3L3P0CL85 134 aa13.35□□□□□ -0.27
LIG1-216ENST00000598938 UBE2L3P68036 154 aaKnown RBP13.35□□□□□ -0.27
LIG1-216ENST00000598938 BLNKQ8WV28 456 aa13.35□□□□□ -0.27
LIG1-216ENST00000598938 UBE2CO00762 179 aa13.34□□□□□ -0.27
LIG1-216ENST00000598938 HMGB3O15347 200 aaKnown RBP13.34□□□□□ -0.27
LIG1-216ENST00000598938 PSG9Q00887 426 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms