RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 C17orf77Q96MU5 243 aa12.83□□□□□ -0.36
SHKBP1-204ENST00000594862 UBE2L5PA0A1B0GUS4 154 aa12.82□□□□□ -0.36
SHKBP1-204ENST00000594862 IGSF23A1L1A6 192 aa12.82□□□□□ -0.36
SHKBP1-204ENST00000594862 F6UB75 175 aa12.82□□□□□ -0.36
SHKBP1-204ENST00000594862 PET100P0DJ07 73 aa12.82□□□□□ -0.36
SHKBP1-204ENST00000594862 RPL29P47914 159 aaKnown RBP12.82□□□□□ -0.36
SHKBP1-204ENST00000594862 DEFB1P60022 68 aa12.82□□□□□ -0.36
SHKBP1-204ENST00000594862 RFNGQ9Y644 331 aa12.82□□□□□ -0.36
SHKBP1-204ENST00000594862 HYDINQ4G0P3 5121 aa12.82□□□□□ -0.36
SHKBP1-204ENST00000594862 TRAV8-2A0A0B4J237 113 aa12.81□□□□□ -0.36
SHKBP1-204ENST00000594862 CXCL3P19876 107 aa12.81□□□□□ -0.36
SHKBP1-204ENST00000594862 PRR20EP86478 221 aa12.81□□□□□ -0.36
SHKBP1-204ENST00000594862 PRR20CP86479 221 aa12.81□□□□□ -0.36
SHKBP1-204ENST00000594862 PRR20DP86480 221 aa12.81□□□□□ -0.36
SHKBP1-204ENST00000594862 PRR20BP86481 221 aa12.81□□□□□ -0.36
SHKBP1-204ENST00000594862 PRR20AP86496 221 aa12.81□□□□□ -0.36
SHKBP1-204ENST00000594862 OPCMLQ14982 345 aa12.81□□□□□ -0.36
SHKBP1-204ENST00000594862 SLC35B3Q9H1N7 401 aa12.81□□□□□ -0.36
SHKBP1-204ENST00000594862 DNAJC4Q9NNZ3 241 aa12.81□□□□□ -0.36
SHKBP1-204ENST00000594862 KCNIP2Q9NS61 270 aa12.81□□□□□ -0.36
SHKBP1-204ENST00000594862 TRAV10A0A0B4J240 114 aa12.8□□□□□ -0.36
SHKBP1-204ENST00000594862 SSNA1O43805 119 aa12.8□□□□□ -0.36
SHKBP1-204ENST00000594862 HLA-DMBP28068 263 aa12.8□□□□□ -0.36
SHKBP1-204ENST00000594862 CNN1P51911 297 aaKnown RBP12.8□□□□□ -0.36
SHKBP1-204ENST00000594862 B2MP61769 119 aa12.8□□□□□ -0.36
SHKBP1-204ENST00000594862 GUK1Q16774 197 aa12.8□□□□□ -0.36
SHKBP1-204ENST00000594862 TMEM37Q8WXS4 190 aa12.8□□□□□ -0.36
SHKBP1-204ENST00000594862 IGF2BP2-AS1Q96M15 143 aa12.8□□□□□ -0.36
SHKBP1-204ENST00000594862 PXMP4Q9Y6I8 212 aa12.8□□□□□ -0.36
SHKBP1-204ENST00000594862 MRPS12O15235 138 aaKnown RBP12.79□□□□□ -0.36
SHKBP1-204ENST00000594862 LY6G6CO95867 125 aa12.79□□□□□ -0.36
SHKBP1-204ENST00000594862 INSP01308 110 aa12.79□□□□□ -0.36
SHKBP1-204ENST00000594862 HBE1P02100 147 aa12.79□□□□□ -0.36
SHKBP1-204ENST00000594862 FGF7P21781 194 aa12.79□□□□□ -0.36
SHKBP1-204ENST00000594862 FXYD7P58549 80 aa12.79□□□□□ -0.36
SHKBP1-204ENST00000594862 PSG3Q16557 428 aa12.79□□□□□ -0.36
SHKBP1-204ENST00000594862 MIC13Q5XKP0 118 aa12.79□□□□□ -0.36
SHKBP1-204ENST00000594862 AMTNQ6UX39 209 aa12.79□□□□□ -0.36
SHKBP1-204ENST00000594862 RNF182Q8N6D2 247 aa12.79□□□□□ -0.36
SHKBP1-204ENST00000594862 SLC39A9Q9NUM3 307 aa12.79□□□□□ -0.36
SHKBP1-204ENST00000594862 IGHV3OR16-12A0A075B7B8 117 aa12.78□□□□□ -0.36
SHKBP1-204ENST00000594862 BOLA2-SMG1P6H3BVE0 249 aa12.78□□□□□ -0.36
SHKBP1-204ENST00000594862 LRRC37A5PQ49AS3 106 aa12.78□□□□□ -0.36
SHKBP1-204ENST00000594862 OR11H7Q8NGC8 314 aa12.78□□□□□ -0.36
SHKBP1-204ENST00000594862 OR8A1Q8NGG7 326 aa12.78□□□□□ -0.36
SHKBP1-204ENST00000594862 TMEM208Q9BTX3 173 aa12.78□□□□□ -0.36
SHKBP1-204ENST00000594862 ZNF331Q9NQX6 463 aaPredicted RBP12.78□□□□□ -0.36
SHKBP1-204ENST00000594862 PPP1R14DQ9NXH3 145 aa12.78□□□□□ -0.36
SHKBP1-204ENST00000594862 SIX6O95475 246 aa12.77□□□□□ -0.37
SHKBP1-204ENST00000594862 SPART-AS1P0CW21 52 aa12.77□□□□□ -0.37
SHKBP1-204ENST00000594862 IGLC2P0DOY2 106 aa12.77□□□□□ -0.37
SHKBP1-204ENST00000594862 HIST1H1AQ02539 215 aaPredicted RBP12.77□□□□□ -0.37
SHKBP1-204ENST00000594862 IGFL4Q6B9Z1 124 aa12.77□□□□□ -0.37
SHKBP1-204ENST00000594862 LGALS9CQ6DKI2 356 aa12.77□□□□□ -0.37
SHKBP1-204ENST00000594862 OR5C1Q8NGR4 320 aa12.77□□□□□ -0.37
SHKBP1-204ENST00000594862 NPCDR1Q9BY65 106 aa12.77□□□□□ -0.37
SHKBP1-204ENST00000594862 ZNF253O75346 499 aa12.76□□□□□ -0.37
SHKBP1-204ENST00000594862 RRN3P1Q2M238 152 aa12.76□□□□□ -0.37
SHKBP1-204ENST00000594862 Q6ZTC4 211 aa12.76□□□□□ -0.37
SHKBP1-204ENST00000594862 PPP1R1CQ8WVI7 109 aa12.76□□□□□ -0.37
SHKBP1-204ENST00000594862 RPUSD4Q96CM3 377 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-204ENST00000594862 OR5AC2Q9NZP5 309 aa12.76□□□□□ -0.37
SHKBP1-204ENST00000594862 H2BFSP57053 126 aa12.75□□□□□ -0.37
SHKBP1-204ENST00000594862 RHOBP62745 196 aa12.75□□□□□ -0.37
SHKBP1-204ENST00000594862 SPINK13Q1W4C9 94 aa12.75□□□□□ -0.37
SHKBP1-204ENST00000594862 C1orf158Q8N1D5 194 aa12.75□□□□□ -0.37
SHKBP1-204ENST00000594862 TMEM256Q8N2U0 113 aa12.75□□□□□ -0.37
SHKBP1-204ENST00000594862 TMEM14CQ9P0S9 112 aa12.75□□□□□ -0.37
SHKBP1-204ENST00000594862 LOC102723971A0A1B0GUV8 181 aa12.74□□□□□ -0.37
SHKBP1-204ENST00000594862 C17orf112F2Z3M2 114 aa12.74□□□□□ -0.37
SHKBP1-204ENST00000594862 PTTG1O95997 202 aa12.74□□□□□ -0.37
SHKBP1-204ENST00000594862 NHLH2Q02577 135 aa12.74□□□□□ -0.37
SHKBP1-204ENST00000594862 OR10J6PQ8NGY7 276 aa12.74□□□□□ -0.37
SHKBP1-204ENST00000594862 RNF126Q9BV68 326 aa12.74□□□□□ -0.37
SHKBP1-204ENST00000594862 CELA1Q9UNI1 258 aa12.74□□□□□ -0.37
SHKBP1-204ENST00000594862 ALMS1Q8TCU4 4167 aa12.73□□□□□ -0.37
SHKBP1-204ENST00000594862 DEFB131BA0A096LNP1 70 aa12.73□□□□□ -0.37
SHKBP1-204ENST00000594862 IGLL5B9A064 214 aa12.73□□□□□ -0.37
SHKBP1-204ENST00000594862 MPC2O95563 127 aa12.73□□□□□ -0.37
SHKBP1-204ENST00000594862 PDE6HQ13956 83 aa12.73□□□□□ -0.37
SHKBP1-204ENST00000594862 C12orf74Q32Q52 190 aa12.73□□□□□ -0.37
SHKBP1-204ENST00000594862 MORN5Q5VZ52 161 aa12.73□□□□□ -0.37
SHKBP1-204ENST00000594862 H0YIZ8 118 aa12.72□□□□□ -0.37
SHKBP1-204ENST00000594862 M0R2Z0 102 aa12.72□□□□□ -0.37
SHKBP1-204ENST00000594862 TSPOP30536 169 aa12.72□□□□□ -0.37
SHKBP1-204ENST00000594862 EMP1P54849 157 aa12.72□□□□□ -0.37
SHKBP1-204ENST00000594862 CLINT1Q14677 625 aa12.72□□□□□ -0.37
SHKBP1-204ENST00000594862 OXA1LQ15070 435 aa12.72□□□□□ -0.37
SHKBP1-204ENST00000594862 THAP6Q8TBB0 222 aa12.72□□□□□ -0.37
SHKBP1-204ENST00000594862 MRPL53Q96EL3 112 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-204ENST00000594862 ATP5SQ99766 215 aa12.72□□□□□ -0.37
SHKBP1-204ENST00000594862 C20orf144Q9BQM9 153 aa12.72□□□□□ -0.37
SHKBP1-204ENST00000594862 MRPL32Q9BYC8 188 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-204ENST00000594862 WDR61Q9GZS3 305 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-204ENST00000594862 DKK2Q9UBU2 259 aa12.72□□□□□ -0.37
SHKBP1-204ENST00000594862 H3BQ15 152 aa12.71□□□□□ -0.37
SHKBP1-204ENST00000594862 SLC17A3O00476 420 aa12.71□□□□□ -0.37
SHKBP1-204ENST00000594862 CRXO43186 299 aaPredicted RBP12.71□□□□□ -0.37
SHKBP1-204ENST00000594862 HIST1H1EP10412 219 aaKnown RBP12.71□□□□□ -0.37
SHKBP1-204ENST00000594862 CDKN1BP46527 198 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms