RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 RNF24Q9Y225 148 aa16.78■□□□□ 0.28
LSM4-202ENST00000593564 CBY3A6NI87 242 aa16.77■□□□□ 0.28
LSM4-202ENST00000593564 CCNKO75909 580 aa16.77■□□□□ 0.28
LSM4-202ENST00000593564 NDUFB6O95139 128 aa16.77■□□□□ 0.28
LSM4-202ENST00000593564 RRAS2P62070 204 aaPredicted RBP16.77■□□□□ 0.28
LSM4-202ENST00000593564 PATE2Q6UY27 113 aa16.77■□□□□ 0.28
LSM4-202ENST00000593564 LRRC20Q8TCA0 184 aa16.77■□□□□ 0.28
LSM4-202ENST00000593564 C16orf74Q96GX8 76 aa16.77■□□□□ 0.28
LSM4-202ENST00000593564 NPVFQ9HCQ7 196 aa16.77■□□□□ 0.28
LSM4-202ENST00000593564 NBDYA0A0U1RRE5 68 aa16.76■□□□□ 0.27
LSM4-202ENST00000593564 MRPS12O15235 138 aaKnown RBP16.76■□□□□ 0.27
LSM4-202ENST00000593564 NUDT3O95989 172 aa16.76■□□□□ 0.27
LSM4-202ENST00000593564 SRRQ9GZT4 340 aa16.76■□□□□ 0.27
LSM4-202ENST00000593564 ARL6Q9H0F7 186 aa16.76■□□□□ 0.27
LSM4-202ENST00000593564 NAP1L6A6NFF2 107 aa16.75■□□□□ 0.27
LSM4-202ENST00000593564 METTL15P1P0C7V9 234 aa16.75■□□□□ 0.27
LSM4-202ENST00000593564 CXCL2P19875 107 aa16.75■□□□□ 0.27
LSM4-202ENST00000593564 CDKN1BP46527 198 aa16.75■□□□□ 0.27
LSM4-202ENST00000593564 TEPPQ6URK8 271 aa16.75■□□□□ 0.27
LSM4-202ENST00000593564 OR10P1Q8NGE3 313 aa16.75■□□□□ 0.27
LSM4-202ENST00000593564 RPUSD4Q96CM3 377 aaKnown RBP16.75■□□□□ 0.27
LSM4-202ENST00000593564 ARV1Q9H2C2 271 aa16.75■□□□□ 0.27
LSM4-202ENST00000593564 MGAT4CQ9UBM8 478 aa16.75■□□□□ 0.27
LSM4-202ENST00000593564 TIMM8BQ9Y5J9 83 aaPredicted RBP16.75■□□□□ 0.27
LSM4-202ENST00000593564 OR4E1P0C645 316 aa16.74■□□□□ 0.27
LSM4-202ENST00000593564 CCL18P55774 89 aa16.74■□□□□ 0.27
LSM4-202ENST00000593564 TNP2Q05952 138 aa16.74■□□□□ 0.27
LSM4-202ENST00000593564 SLC38A11Q08AI6 406 aa16.74■□□□□ 0.27
LSM4-202ENST00000593564 SPANXN2Q5MJ10 180 aa16.74■□□□□ 0.27
LSM4-202ENST00000593564 PXDC1Q5TGL8 231 aa16.74■□□□□ 0.27
LSM4-202ENST00000593564 ZNF493Q6ZR52 646 aa16.74■□□□□ 0.27
LSM4-202ENST00000593564 FLVCR2Q9UPI3 526 aa16.74■□□□□ 0.27
LSM4-202ENST00000593564 TSC22D2O75157 780 aa16.73■□□□□ 0.27
LSM4-202ENST00000593564 HTN1P15515 57 aa16.73■□□□□ 0.27
LSM4-202ENST00000593564 ANXA7P20073 488 aaKnown RBP16.73■□□□□ 0.27
LSM4-202ENST00000593564 LCN15Q6UWW0 184 aa16.73■□□□□ 0.27
LSM4-202ENST00000593564 ZNF546Q86UE3 836 aa16.73■□□□□ 0.27
LSM4-202ENST00000593564 C6orf223Q8N319 242 aa16.73■□□□□ 0.27
LSM4-202ENST00000593564 RNASE8Q8TDE3 154 aaKnown RBP16.73■□□□□ 0.27
LSM4-202ENST00000593564 CCDC160A6NGH7 325 aa16.72■□□□□ 0.27
LSM4-202ENST00000593564 INPP1P49441 399 aa16.72■□□□□ 0.27
LSM4-202ENST00000593564 TAS2R30P59541 319 aa16.72■□□□□ 0.27
LSM4-202ENST00000593564 TMEM263Q8WUH6 116 aaKnown RBP16.72■□□□□ 0.27
LSM4-202ENST00000593564 RNF141Q8WVD5 230 aa16.72■□□□□ 0.27
LSM4-202ENST00000593564 SLC50A1Q9BRV3 221 aa16.72■□□□□ 0.27
LSM4-202ENST00000593564 ZNF331Q9NQX6 463 aaPredicted RBP16.72■□□□□ 0.27
LSM4-202ENST00000593564 LINC00588Q9Y4M8 146 aa16.72■□□□□ 0.27
LSM4-202ENST00000593564 H7BYZ3 331 aa16.71■□□□□ 0.27
LSM4-202ENST00000593564 PRB4P10163 310 aaPredicted RBP16.71■□□□□ 0.27
LSM4-202ENST00000593564 IAH1Q2TAA2 248 aaPredicted RBP16.71■□□□□ 0.27
LSM4-202ENST00000593564 LINC00305Q7Z4B0 112 aa16.71■□□□□ 0.27
LSM4-202ENST00000593564 C20orf144Q9BQM9 153 aa16.71■□□□□ 0.27
LSM4-202ENST00000593564 NOP10Q9NPE3 64 aaKnown RBP16.71■□□□□ 0.27
LSM4-202ENST00000593564 GOSR2O14653 212 aa16.7■□□□□ 0.26
LSM4-202ENST00000593564 SCGB1D2O95969 90 aa16.7■□□□□ 0.26
LSM4-202ENST00000593564 BAK1Q16611 211 aa16.7■□□□□ 0.26
LSM4-202ENST00000593564 TRIQKQ629K1 86 aa16.7■□□□□ 0.26
LSM4-202ENST00000593564 GGACTQ9BVM4 153 aa16.7■□□□□ 0.26
LSM4-202ENST00000593564 RCL1Q9Y2P8 373 aaKnown RBP16.7■□□□□ 0.26
LSM4-202ENST00000593564 C16orf90A8MZG2 172 aa16.69■□□□□ 0.26
LSM4-202ENST00000593564 AGPAT2O15120 278 aa16.69■□□□□ 0.26
LSM4-202ENST00000593564 ARL16Q0P5N6 197 aa16.69■□□□□ 0.26
LSM4-202ENST00000593564 C4orf46Q504U0 113 aa16.69■□□□□ 0.26
LSM4-202ENST00000593564 BPIFA4PQ86YQ2 179 aa16.69■□□□□ 0.26
LSM4-202ENST00000593564 ZBTB8BQ8NAP8 495 aaPredicted RBP16.69■□□□□ 0.26
LSM4-202ENST00000593564 OR10J6PQ8NGY7 276 aa16.69■□□□□ 0.26
LSM4-202ENST00000593564 KRTAP4-5Q9BYR2 181 aa16.69■□□□□ 0.26
LSM4-202ENST00000593564 CLINT1Q14677 625 aa16.68■□□□□ 0.26
LSM4-202ENST00000593564 LINC00612Q8N6U2 182 aa16.68■□□□□ 0.26
LSM4-202ENST00000593564 BTCP35070 178 aa16.67■□□□□ 0.26
LSM4-202ENST00000593564 KIR3DS1Q14943 382 aa16.67■□□□□ 0.26
LSM4-202ENST00000593564 SSX7Q7RTT5 188 aa16.67■□□□□ 0.26
LSM4-202ENST00000593564 MITD1Q8WV92 249 aa16.67■□□□□ 0.26
LSM4-202ENST00000593564 TMEM37Q8WXS4 190 aa16.67■□□□□ 0.26
LSM4-202ENST00000593564 RBM38Q9H0Z9 239 aaKnown RBP16.67■□□□□ 0.26
LSM4-202ENST00000593564 GSKIPQ9P0R6 139 aa16.67■□□□□ 0.26
LSM4-202ENST00000593564 APOBP04114 4563 aaKnown RBP16.66■□□□□ 0.26
LSM4-202ENST00000593564 SLC17A3O00476 420 aa16.66■□□□□ 0.26
LSM4-202ENST00000593564 COX7A2P2O60397 106 aa16.66■□□□□ 0.26
LSM4-202ENST00000593564 CDK2AP2O75956 126 aa16.66■□□□□ 0.26
LSM4-202ENST00000593564 SNRPCP09234 159 aaKnown RBP16.66■□□□□ 0.26
LSM4-202ENST00000593564 DNAH5Q8TE73 4624 aa16.66■□□□□ 0.26
LSM4-202ENST00000593564 LINC00854A0A1B0GVQ3 168 aa16.65■□□□□ 0.26
LSM4-202ENST00000593564 C7orf66A4D0T2 115 aa16.65■□□□□ 0.26
LSM4-202ENST00000593564 PRAC2D3DTV9 90 aa16.65■□□□□ 0.26
LSM4-202ENST00000593564 MBPP02686 304 aaPredicted RBP16.65■□□□□ 0.26
LSM4-202ENST00000593564 GFI1BQ5VTD9 330 aa16.65■□□□□ 0.26
LSM4-202ENST00000593564 MORN5Q5VZ52 161 aa16.65■□□□□ 0.26
LSM4-202ENST00000593564 CCDC28AQ8IWP9 274 aa16.65■□□□□ 0.26
LSM4-202ENST00000593564 MGST2Q99735 147 aa16.65■□□□□ 0.26
LSM4-202ENST00000593564 PARD6GQ9BYG4 376 aaPredicted RBP16.65■□□□□ 0.26
LSM4-202ENST00000593564 PXMP4Q9Y6I8 212 aa16.65■□□□□ 0.26
LSM4-202ENST00000593564 CENPXA8MT69 81 aa16.64■□□□□ 0.25
LSM4-202ENST00000593564 ZNF701M0R085 212 aaPredicted RBP16.64■□□□□ 0.25
LSM4-202ENST00000593564 IGLC2P0DOY2 106 aa16.64■□□□□ 0.25
LSM4-202ENST00000593564 OPCMLQ14982 345 aa16.64■□□□□ 0.25
LSM4-202ENST00000593564 C10orf113Q5VZT2 155 aa16.64■□□□□ 0.25
LSM4-202ENST00000593564 GNPNAT1Q96EK6 184 aaPredicted RBP16.64■□□□□ 0.25
LSM4-202ENST00000593564 ZNF503Q96F45 646 aa16.64■□□□□ 0.25
LSM4-202ENST00000593564 SDHCQ99643 169 aaPredicted RBP16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms