RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 A0A087X0K7 114 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.98□□□□□ -0.65
LIG3-205ENST00000585941 PHOX2AO14813 284 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 BUB3O43684 328 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 PF4V1P10720 104 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 COX19Q49B96 90 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 GOLT1AQ6ZVE7 132 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 FRZBQ92765 325 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 C17orf77Q96MU5 243 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 NOL4LQ96MY1 436 aaPredicted RBP10.98□□□□□ -0.65
LIG3-205ENST00000585941 ZNF492Q9P255 531 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 ZFP30Q9Y2G7 519 aa10.98□□□□□ -0.65
LIG3-205ENST00000585941 ZNF705GA8MUZ8 300 aaPredicted RBP10.97□□□□□ -0.65
LIG3-205ENST00000585941 GATCO43716 136 aaKnown RBP10.97□□□□□ -0.65
LIG3-205ENST00000585941 TRGC1P0CF51 173 aa10.97□□□□□ -0.65
LIG3-205ENST00000585941 ARL3P36405 182 aa10.97□□□□□ -0.65
LIG3-205ENST00000585941 CFHR3Q02985 330 aa10.97□□□□□ -0.65
LIG3-205ENST00000585941 FABP9Q0Z7S8 132 aa10.97□□□□□ -0.65
LIG3-205ENST00000585941 ACTL10Q5JWF8 245 aa10.97□□□□□ -0.65
LIG3-205ENST00000585941 Q86TA4 180 aa10.97□□□□□ -0.65
LIG3-205ENST00000585941 TMEM183AQ8IXX5 376 aa10.97□□□□□ -0.65
LIG3-205ENST00000585941 NHLRC2Q8NBF2 726 aa10.97□□□□□ -0.65
LIG3-205ENST00000585941 SERTAD4Q9NUC0 356 aa10.97□□□□□ -0.65
LIG3-205ENST00000585941 VPS13CQ709C8 3753 aa10.97□□□□□ -0.65
LIG3-205ENST00000585941 IGHV3-35A0A0C4DH35 117 aa10.96□□□□□ -0.65
LIG3-205ENST00000585941 SMIM27A0A1W2PRY6 76 aa10.96□□□□□ -0.65
LIG3-205ENST00000585941 DIRC3C9JPN6 131 aa10.96□□□□□ -0.65
LIG3-205ENST00000585941 NDUFA4O00483 81 aa10.96□□□□□ -0.65
LIG3-205ENST00000585941 GRAMD2BQ96HH9 432 aa10.96□□□□□ -0.65
LIG3-205ENST00000585941 PRSS22Q9GZN4 317 aa10.96□□□□□ -0.65
LIG3-205ENST00000585941 CLPSL1A2RUU4 121 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 IGHG4P01861 327 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 HOXA5P20719 270 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 NDUFA6P56556 154 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 RPL15P61313 204 aaKnown RBP10.95□□□□□ -0.66
LIG3-205ENST00000585941 PSG3Q16557 428 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 CT83Q5H943 113 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 NUDT10Q8NFP7 164 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 NUDT11Q96G61 164 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 SLC50A1Q9BRV3 221 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 U3KQE9 123 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 CELSR1Q9NYQ6 3014 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 ZNF785A8K8V0 405 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 IGLV2-11P01706 119 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 AKR1D1P51857 326 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 Q6ZS46 218 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 DAZAP1Q96EP5 407 aaKnown RBP10.95□□□□□ -0.66
LIG3-205ENST00000585941 NPFFR1Q9GZQ6 430 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 TRAPPC1Q9Y5R8 145 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 SMAD5-AS1Q9Y6J3 95 aa10.95□□□□□ -0.66
LIG3-205ENST00000585941 MT-ND6P03923 174 aa10.94□□□□□ -0.66
LIG3-205ENST00000585941 S100A8P05109 93 aa10.94□□□□□ -0.66
LIG3-205ENST00000585941 PRR27Q6MZM9 219 aa10.94□□□□□ -0.66
LIG3-205ENST00000585941 WDR73Q6P4I2 378 aa10.94□□□□□ -0.66
LIG3-205ENST00000585941 PRNTQ86SH4 94 aa10.94□□□□□ -0.66
LIG3-205ENST00000585941 CLEC5AQ9NY25 188 aa10.94□□□□□ -0.66
LIG3-205ENST00000585941 PSG8Q9UQ74 426 aa10.94□□□□□ -0.66
LIG3-205ENST00000585941 IZUMO1RA6ND01 250 aa10.93□□□□□ -0.66
LIG3-205ENST00000585941 P01737 135 aa10.93□□□□□ -0.66
LIG3-205ENST00000585941 RASL11AQ6T310 242 aa10.93□□□□□ -0.66
LIG3-205ENST00000585941 OR4B1Q8NGF8 309 aa10.93□□□□□ -0.66
LIG3-205ENST00000585941 OR4X2Q8NGF9 303 aa10.93□□□□□ -0.66
LIG3-205ENST00000585941 TSKUQ8WUA8 353 aa10.93□□□□□ -0.66
LIG3-205ENST00000585941 SGK494Q96LW2 274 aa10.93□□□□□ -0.66
LIG3-205ENST00000585941 KLK15Q9H2R5 256 aa10.93□□□□□ -0.66
LIG3-205ENST00000585941 RPP21Q9H633 154 aaKnown RBP10.93□□□□□ -0.66
LIG3-205ENST00000585941 ZNF331Q9NQX6 463 aaPredicted RBP10.93□□□□□ -0.66
LIG3-205ENST00000585941 HELZ2Q9BYK8 2649 aaKnown RBP10.93□□□□□ -0.66
LIG3-205ENST00000585941 ZANQ9Y493 2812 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 IGHV3OR16-8A0A075B7F1 116 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 C19orf71A6NCJ1 209 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 A8MWL6 223 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 PSMB8P28062 276 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 CDX1P47902 265 aaPredicted RBP10.92□□□□□ -0.66
LIG3-205ENST00000585941 SLC35B1P78383 322 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 SMUG1Q53HV7 270 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 FOXC2Q99958 501 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 GNB1LQ9BYB4 327 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 NAT8BQ9UHF3 227 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 TRAV8-1A0A0A6YYK1 113 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 A0A1W2PS18 150 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 FAM231BA6NCW3 169 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 M0R3E3 92 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 SAPCD1Q5SSQ6 148 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 GBGT1Q8N5D6 347 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 TMEM86BQ8N661 226 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 WFDC11Q8NEX6 87 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 MRPL53Q96EL3 112 aaKnown RBP10.92□□□□□ -0.66
LIG3-205ENST00000585941 GFRA4Q9GZZ7 299 aa10.92□□□□□ -0.66
LIG3-205ENST00000585941 NPIPB6E9PJ23 425 aa10.91□□□□□ -0.66
LIG3-205ENST00000585941 HOXA3O43365 443 aaPredicted RBP10.91□□□□□ -0.66
LIG3-205ENST00000585941 COA6Q5JTJ3 125 aaKnown RBP10.91□□□□□ -0.66
LIG3-205ENST00000585941 C16orf54Q6UWD8 224 aa10.91□□□□□ -0.66
LIG3-205ENST00000585941 SVEP1Q4LDE5 3571 aa10.91□□□□□ -0.66
LIG3-205ENST00000585941 CSMD2Q7Z408 3487 aa10.9□□□□□ -0.66
LIG3-205ENST00000585941 RBAKDNA6NC62 111 aa10.9□□□□□ -0.66
LIG3-205ENST00000585941 FOXE3Q13461 319 aa10.9□□□□□ -0.66
LIG3-205ENST00000585941 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.9□□□□□ -0.66
LIG3-205ENST00000585941 COX8CQ7Z4L0 72 aa10.9□□□□□ -0.66
LIG3-205ENST00000585941 ATP5L2Q7Z4Y8 100 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms