RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 MUC21Q5SSG8 566 aa12.34□□□□□ -0.43
NUP88-207ENST00000573584 RNF125Q96EQ8 232 aa12.34□□□□□ -0.43
NUP88-207ENST00000573584 RNF5Q99942 180 aa12.34□□□□□ -0.43
NUP88-207ENST00000573584 PIEZO2Q9H5I5 2752 aa12.34□□□□□ -0.43
NUP88-207ENST00000573584 GVINP1Q7Z2Y8 2422 aa12.34□□□□□ -0.43
NUP88-207ENST00000573584 A0A1B0GW15 77 aa12.34□□□□□ -0.43
NUP88-207ENST00000573584 TMEM190Q8WZ59 177 aa12.34□□□□□ -0.43
NUP88-207ENST00000573584 ZNF747Q9BV97 191 aa12.34□□□□□ -0.43
NUP88-207ENST00000573584 CSN1S1P47710 185 aa12.33□□□□□ -0.44
NUP88-207ENST00000573584 DEFB125Q8N687 156 aa12.33□□□□□ -0.44
NUP88-207ENST00000573584 ZNF414Q96IQ9 312 aa12.33□□□□□ -0.44
NUP88-207ENST00000573584 SRSF8Q9BRL6 282 aaKnown RBP12.33□□□□□ -0.44
NUP88-207ENST00000573584 TRAV30A0A087WSZ9 112 aa12.33□□□□□ -0.44
NUP88-207ENST00000573584 B9A039 149 aa12.33□□□□□ -0.44
NUP88-207ENST00000573584 TIMM23O14925 209 aa12.33□□□□□ -0.44
NUP88-207ENST00000573584 GATD1Q8NB37 220 aa12.33□□□□□ -0.44
NUP88-207ENST00000573584 A0A087X0K7 114 aa12.32□□□□□ -0.44
NUP88-207ENST00000573584 LY6LH3BQJ8 138 aa12.32□□□□□ -0.44
NUP88-207ENST00000573584 CT45A10P0DMU9 189 aa12.32□□□□□ -0.44
NUP88-207ENST00000573584 RBX1P62877 108 aa12.32□□□□□ -0.44
NUP88-207ENST00000573584 Q6AWC8 147 aa12.32□□□□□ -0.44
NUP88-207ENST00000573584 OR10AG1Q8NH19 301 aa12.32□□□□□ -0.44
NUP88-207ENST00000573584 S4R3C0 116 aa12.32□□□□□ -0.44
NUP88-207ENST00000573584 ARF6P62330 175 aa12.32□□□□□ -0.44
NUP88-207ENST00000573584 KLF17Q5JT82 389 aaPredicted RBP12.32□□□□□ -0.44
NUP88-207ENST00000573584 C8orf49Q96NF6 230 aa12.32□□□□□ -0.44
NUP88-207ENST00000573584 SERTM2A0A1B0GWG4 89 aa12.31□□□□□ -0.44
NUP88-207ENST00000573584 MRPS12O15235 138 aaKnown RBP12.31□□□□□ -0.44
NUP88-207ENST00000573584 ONECUT1Q9UBC0 465 aa12.31□□□□□ -0.44
NUP88-207ENST00000573584 IFI27P40305 119 aaPredicted RBP12.31□□□□□ -0.44
NUP88-207ENST00000573584 HIST1H1AQ02539 215 aaPredicted RBP12.31□□□□□ -0.44
NUP88-207ENST00000573584 LDLRAD2Q5SZI1 272 aa12.31□□□□□ -0.44
NUP88-207ENST00000573584 Q8NA96 180 aa12.31□□□□□ -0.44
NUP88-207ENST00000573584 ACACAQ13085 2346 aa12.31□□□□□ -0.44
NUP88-207ENST00000573584 OR2T8A6NH00 312 aa12.31□□□□□ -0.44
NUP88-207ENST00000573584 CBY3A6NI87 242 aa12.31□□□□□ -0.44
NUP88-207ENST00000573584 NCR2O95944 276 aa12.31□□□□□ -0.44
NUP88-207ENST00000573584 CD3EP07766 207 aa12.31□□□□□ -0.44
NUP88-207ENST00000573584 FAM106CPP0CH98 169 aa12.31□□□□□ -0.44
NUP88-207ENST00000573584 FAM106AQ4KMX7 169 aa12.31□□□□□ -0.44
NUP88-207ENST00000573584 BCL6BQ8N143 479 aaPredicted RBP12.31□□□□□ -0.44
NUP88-207ENST00000573584 TMSB15BA0A087X1C1 80 aa12.3□□□□□ -0.44
NUP88-207ENST00000573584 LOC389332A0A1B0GUA5 103 aa12.3□□□□□ -0.44
NUP88-207ENST00000573584 AAMDCQ9H7C9 122 aa12.3□□□□□ -0.44
NUP88-207ENST00000573584 HILPDAQ9Y5L2 63 aa12.3□□□□□ -0.44
NUP88-207ENST00000573584 ZNF292O60281 2723 aa12.3□□□□□ -0.44
NUP88-207ENST00000573584 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.3□□□□□ -0.44
NUP88-207ENST00000573584 WI2-2373I1.2A0A1W2PRP0 233 aa12.3□□□□□ -0.44
NUP88-207ENST00000573584 GNG7O60262 68 aa12.3□□□□□ -0.44
NUP88-207ENST00000573584 COX8AP10176 69 aa12.3□□□□□ -0.44
NUP88-207ENST00000573584 GPR183P32249 361 aa12.3□□□□□ -0.44
NUP88-207ENST00000573584 LYZL1Q6UWQ5 148 aa12.3□□□□□ -0.44
NUP88-207ENST00000573584 ZNF493Q6ZR52 646 aa12.3□□□□□ -0.44
NUP88-207ENST00000573584 APC2O95996 2303 aa12.29□□□□□ -0.44
NUP88-207ENST00000573584 D6R8Y8 96 aa12.29□□□□□ -0.44
NUP88-207ENST00000573584 NBR2O15453 112 aa12.29□□□□□ -0.44
NUP88-207ENST00000573584 SNAI2O43623 268 aa12.29□□□□□ -0.44
NUP88-207ENST00000573584 RHOGP84095 191 aa12.29□□□□□ -0.44
NUP88-207ENST00000573584 POLEQ07864 2286 aa12.29□□□□□ -0.44
NUP88-207ENST00000573584 TMEM213A2RRL7 107 aa12.28□□□□□ -0.44
NUP88-207ENST00000573584 TMEM189A5PLL7 270 aa12.28□□□□□ -0.44
NUP88-207ENST00000573584 LOXL1Q08397 574 aaPredicted RBP12.28□□□□□ -0.44
NUP88-207ENST00000573584 OR8A1Q8NGG7 326 aa12.28□□□□□ -0.44
NUP88-207ENST00000573584 IGFBPL1Q8WX77 278 aa12.28□□□□□ -0.44
NUP88-207ENST00000573584 CD5LO43866 347 aa12.28□□□□□ -0.44
NUP88-207ENST00000573584 PDE6HQ13956 83 aa12.28□□□□□ -0.44
NUP88-207ENST00000573584 S100A7AQ86SG5 101 aa12.28□□□□□ -0.44
NUP88-207ENST00000573584 RAB1BQ9H0U4 201 aa12.28□□□□□ -0.44
NUP88-207ENST00000573584 SIGLEC8Q9NYZ4 499 aa12.28□□□□□ -0.44
NUP88-207ENST00000573584 AMMECR1LQ6DCA0 310 aa12.27□□□□□ -0.44
NUP88-207ENST00000573584 AMN1Q8IY45 258 aa12.27□□□□□ -0.44
NUP88-207ENST00000573584 ZNF318Q5VUA4 2279 aa12.27□□□□□ -0.45
NUP88-207ENST00000573584 A0A096LNJ9 63 aa12.27□□□□□ -0.45
NUP88-207ENST00000573584 A0A1W2PRD5 423 aa12.27□□□□□ -0.45
NUP88-207ENST00000573584 A0A1W2PRF3 423 aa12.27□□□□□ -0.45
NUP88-207ENST00000573584 A0A1W2PRM7 423 aa12.27□□□□□ -0.45
NUP88-207ENST00000573584 PRR30Q53SZ7 412 aaPredicted RBP12.27□□□□□ -0.45
NUP88-207ENST00000573584 FAM104BQ5XKR9 115 aa12.27□□□□□ -0.45
NUP88-207ENST00000573584 PRELID3AQ96N28 172 aa12.27□□□□□ -0.45
NUP88-207ENST00000573584 DPM3Q9P2X0 92 aa12.27□□□□□ -0.45
NUP88-207ENST00000573584 SH2D1AO60880 128 aa12.27□□□□□ -0.45
NUP88-207ENST00000573584 FOXE3Q13461 319 aa12.27□□□□□ -0.45
NUP88-207ENST00000573584 C2orf91Q6ZV80 131 aa12.27□□□□□ -0.45
NUP88-207ENST00000573584 RIF1Q5UIP0 2472 aaKnown RBP12.26□□□□□ -0.45
NUP88-207ENST00000573584 ORMDL3Q8N138 153 aa12.26□□□□□ -0.45
NUP88-207ENST00000573584 LRBAP50851 2863 aa12.26□□□□□ -0.45
NUP88-207ENST00000573584 CDKN1BP46527 198 aa12.26□□□□□ -0.45
NUP88-207ENST00000573584 MFAP4P55083 255 aa12.26□□□□□ -0.45
NUP88-207ENST00000573584 HES1Q14469 280 aa12.26□□□□□ -0.45
NUP88-207ENST00000573584 LINC01560Q8TB33 94 aa12.26□□□□□ -0.45
NUP88-207ENST00000573584 U3KQK5 164 aa12.26□□□□□ -0.45
NUP88-207ENST00000573584 ZNF672Q499Z4 452 aaPredicted RBP12.25□□□□□ -0.45
NUP88-207ENST00000573584 CFHR4Q92496 578 aa12.25□□□□□ -0.45
NUP88-207ENST00000573584 FANCD2OSQ96PS1 177 aa12.25□□□□□ -0.45
NUP88-207ENST00000573584 PSG9Q00887 426 aa12.25□□□□□ -0.45
NUP88-207ENST00000573584 NPBQ8NG41 125 aa12.25□□□□□ -0.45
NUP88-207ENST00000573584 IGKV2-40A0A087WW87 121 aaPredicted RBP12.24□□□□□ -0.45
NUP88-207ENST00000573584 NDUFA3O95167 84 aa12.24□□□□□ -0.45
NUP88-207ENST00000573584 IGKV2D-40P01614 121 aaPredicted RBP12.24□□□□□ -0.45
NUP88-207ENST00000573584 FXYD7P58549 80 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms