RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 EVI2AP22794 236 aa3.9□□□□□ -1.79
VPS53-208ENST00000570650 HLA-DMAP28067 261 aa3.9□□□□□ -1.79
VPS53-208ENST00000570650 CDKN1BP46527 198 aa3.9□□□□□ -1.79
VPS53-208ENST00000570650 PIGPP57054 158 aa3.9□□□□□ -1.79
VPS53-208ENST00000570650 HIST1H1AQ02539 215 aaPredicted RBP3.9□□□□□ -1.79
VPS53-208ENST00000570650 ZNF90Q03938 601 aa3.9□□□□□ -1.79
VPS53-208ENST00000570650 NMSQ5H8A3 153 aa3.9□□□□□ -1.79
VPS53-208ENST00000570650 MZT2AQ6P582 158 aa3.9□□□□□ -1.79
VPS53-208ENST00000570650 Q8N814 137 aa3.9□□□□□ -1.79
VPS53-208ENST00000570650 ZNF738Q8NE65 137 aa3.9□□□□□ -1.79
VPS53-208ENST00000570650 OR1B1Q8NGR6 318 aa3.9□□□□□ -1.79
VPS53-208ENST00000570650 VCXQ9H320 206 aa3.9□□□□□ -1.79
VPS53-208ENST00000570650 SLC25A22Q9H936 323 aa3.9□□□□□ -1.79
VPS53-208ENST00000570650 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.9□□□□□ -1.79
VPS53-208ENST00000570650 TRGV2A0A075B6R0 118 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 IGKV1D-37A0A075B6S9 117 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 C3orf85A0A1B0GTC6 90 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 GABARAPH6UMI1 98 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 ZNF324O75467 553 aaPredicted RBP3.89□□□□□ -1.79
VPS53-208ENST00000570650 GABARAPO95166 117 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 OR5AC1P0C628 307 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 SDC2P34741 201 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 RCVRNP35243 200 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 KRTAP10-4P60372 401 aaPredicted RBP3.89□□□□□ -1.79
VPS53-208ENST00000570650 MXD1Q05195 221 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 FGL1Q08830 312 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 DAZ2Q13117 558 aaKnown RBP3.89□□□□□ -1.79
VPS53-208ENST00000570650 OR2F1Q13607 317 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 SP6Q3SY56 376 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 LYPD5Q6UWN5 251 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 Q6ZTI0 123 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 FAM219AQ8IW50 185 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 C10orf126Q8N4M7 172 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 RNF182Q8N6D2 247 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 OR8A1Q8NGG7 326 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 OR4D5Q8NGN0 318 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 S100A16Q96FQ6 103 aaKnown RBP3.89□□□□□ -1.79
VPS53-208ENST00000570650 ZNF486Q96H40 463 aaPredicted RBP3.89□□□□□ -1.79
VPS53-208ENST00000570650 SLC35E1Q96K37 410 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 GPR82Q96P67 336 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 SSR3Q9UNL2 185 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 FAT3Q8TDW7 4589 aa3.89□□□□□ -1.79
VPS53-208ENST00000570650 DNAH8Q96JB1 4490 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 RS1O15537 224 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 CFDP00746 253 aaPredicted RBP3.88□□□□□ -1.79
VPS53-208ENST00000570650 MBPP02686 304 aaPredicted RBP3.88□□□□□ -1.79
VPS53-208ENST00000570650 CRYGDP07320 174 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 S100A7P31151 101 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 PRSS3P35030 304 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 MRPL23Q16540 153 aaKnown RBP3.88□□□□□ -1.79
VPS53-208ENST00000570650 PSG3Q16557 428 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 SCXQ7RTU7 201 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 NEGR1Q7Z3B1 354 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 WFDC10BQ8IUB3 73 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 ARRDC1Q8N5I2 433 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 LRTM2Q8N967 370 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 CCDC71LQ8N9Z2 235 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 TRGV9Q99603 122 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 COPZ2Q9P299 210 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 CACNG5Q9UF02 275 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 CACFD1Q9UGQ2 172 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 U3KQ87 197 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 PKHD1L1Q86WI1 4243 aa3.88□□□□□ -1.79
VPS53-208ENST00000570650 TRAV5A0A0B4J249 113 aa3.87□□□□□ -1.79
VPS53-208ENST00000570650 B3GALNT1O75752 331 aa3.87□□□□□ -1.79
VPS53-208ENST00000570650 CXCL3P19876 107 aa3.87□□□□□ -1.79
VPS53-208ENST00000570650 GPX4P36969 197 aaPredicted RBP3.87□□□□□ -1.79
VPS53-208ENST00000570650 SLAQ13239 276 aa3.87□□□□□ -1.79
VPS53-208ENST00000570650 C4orf46Q504U0 113 aa3.87□□□□□ -1.79
VPS53-208ENST00000570650 UBE2NLQ5JXB2 153 aa3.87□□□□□ -1.79
VPS53-208ENST00000570650 GFI1BQ5VTD9 330 aa3.87□□□□□ -1.79
VPS53-208ENST00000570650 GGNBP1Q5YKI7 109 aa3.87□□□□□ -1.79
VPS53-208ENST00000570650 GPX8Q8TED1 209 aa3.87□□□□□ -1.79
VPS53-208ENST00000570650 RBPMSQ93062 196 aaKnown RBP3.87□□□□□ -1.79
VPS53-208ENST00000570650 PYGO2Q9BRQ0 406 aa3.87□□□□□ -1.79
VPS53-208ENST00000570650 TMEM147Q9BVK8 224 aa3.87□□□□□ -1.79
VPS53-208ENST00000570650 PRO0255Q9UI72 69 aa3.87□□□□□ -1.79
VPS53-208ENST00000570650 BLOC1S6Q9UL45 172 aa3.87□□□□□ -1.79
VPS53-208ENST00000570650 FUT9Q9Y231 359 aa3.87□□□□□ -1.79
VPS53-208ENST00000570650 IGKV1OR2-108A0A075B7D4 117 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 TRGV1A0A0A0MS02 117 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 PRAF2O60831 178 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 CDS2O95674 445 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 RPL7P18124 248 aaKnown RBP3.86□□□□□ -1.79
VPS53-208ENST00000570650 ORM2P19652 201 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 SRIP30626 198 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 ASIPP42127 132 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 CRYBA4P53673 196 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 ATP5IP56385 69 aaPredicted RBP3.86□□□□□ -1.79
VPS53-208ENST00000570650 ASAH1Q13510 395 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 GPR107Q5VW38 600 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 STEAP1BQ6NZ63 245 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 LHFPL1Q86WI0 220 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 LGI3Q8N145 548 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 THAP8Q8NA92 274 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 ZNF680Q8NEM1 530 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 PRSS3P2Q8NHM4 247 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 LHFPL5Q8TAF8 219 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 ZFAND1Q8TCF1 268 aa3.86□□□□□ -1.79
VPS53-208ENST00000570650 IL22RA2Q969J5 263 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms