RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 IGKV1-5P01602 117 aa8.73□□□□□ -1.01
CLK3-226ENST00000569406 GRPP07492 148 aa8.73□□□□□ -1.01
CLK3-226ENST00000569406 PLGLB1Q02325 96 aa8.73□□□□□ -1.01
CLK3-226ENST00000569406 C4orf26Q17RF5 130 aa8.73□□□□□ -1.01
CLK3-226ENST00000569406 TIMD4Q96H15 378 aa8.73□□□□□ -1.01
CLK3-226ENST00000569406 PLEKHA3Q9HB20 300 aa8.73□□□□□ -1.01
CLK3-226ENST00000569406 A0A1W2PPI3 338 aa8.73□□□□□ -1.01
CLK3-226ENST00000569406 SS18L1O75177 396 aaPredicted RBP8.73□□□□□ -1.01
CLK3-226ENST00000569406 ZNF883P0CG24 379 aa8.73□□□□□ -1.01
CLK3-226ENST00000569406 WFDC3Q8IUB2 231 aa8.73□□□□□ -1.01
CLK3-226ENST00000569406 RND1Q92730 232 aa8.73□□□□□ -1.01
CLK3-226ENST00000569406 SNRNP40Q96DI7 357 aaKnown RBP8.73□□□□□ -1.01
CLK3-226ENST00000569406 HS3ST6Q96QI5 342 aa8.73□□□□□ -1.01
CLK3-226ENST00000569406 IGKV3D-15A0A087WSY6 115 aa8.73□□□□□ -1.01
CLK3-226ENST00000569406 MGST3O14880 152 aa8.73□□□□□ -1.01
CLK3-226ENST00000569406 TM4SF5O14894 197 aa8.73□□□□□ -1.01
CLK3-226ENST00000569406 CXorf67Q86X51 503 aaPredicted RBP8.73□□□□□ -1.01
CLK3-226ENST00000569406 HIST1H4GQ99525 98 aa8.73□□□□□ -1.01
CLK3-226ENST00000569406 RAXQ9Y2V3 346 aa8.73□□□□□ -1.01
CLK3-226ENST00000569406 ZG16O60844 167 aa8.72□□□□□ -1.01
CLK3-226ENST00000569406 HBBP68871 147 aa8.72□□□□□ -1.01
CLK3-226ENST00000569406 ZC2HC1BQ5TFG8 222 aa8.72□□□□□ -1.01
CLK3-226ENST00000569406 C15orf53Q8NAA6 179 aa8.72□□□□□ -1.01
CLK3-226ENST00000569406 RFESDQ8TAC1 157 aa8.72□□□□□ -1.01
CLK3-226ENST00000569406 A8MWV9 139 aa8.72□□□□□ -1.01
CLK3-226ENST00000569406 IGKV1-39P01597 117 aa8.72□□□□□ -1.01
CLK3-226ENST00000569406 IGKV1D-39P04432 117 aa8.72□□□□□ -1.01
CLK3-226ENST00000569406 RPL30P62888 115 aaKnown RBP8.72□□□□□ -1.01
CLK3-226ENST00000569406 PRR30Q53SZ7 412 aaPredicted RBP8.72□□□□□ -1.01
CLK3-226ENST00000569406 GATD1Q8NB37 220 aa8.72□□□□□ -1.01
CLK3-226ENST00000569406 FLYWCH2Q96CP2 140 aaKnown RBP8.72□□□□□ -1.01
CLK3-226ENST00000569406 ARRDC1-AS1Q9H2J1 176 aa8.72□□□□□ -1.01
CLK3-226ENST00000569406 MDFICQ9P1T7 246 aa8.72□□□□□ -1.01
CLK3-226ENST00000569406 ZNF292O60281 2723 aa8.72□□□□□ -1.01
CLK3-226ENST00000569406 IL4P05112 153 aa8.72□□□□□ -1.01
CLK3-226ENST00000569406 PCBD1P61457 104 aa8.72□□□□□ -1.01
CLK3-226ENST00000569406 TBC1D28Q2M2D7 210 aa8.72□□□□□ -1.01
CLK3-226ENST00000569406 C11orf52Q96A22 123 aa8.72□□□□□ -1.01
CLK3-226ENST00000569406 ZNF414Q96IQ9 312 aa8.72□□□□□ -1.01
CLK3-226ENST00000569406 TRBV25-1A0A075B6N4 114 aa8.71□□□□□ -1.01
CLK3-226ENST00000569406 KIR2DS2P43631 304 aa8.71□□□□□ -1.01
CLK3-226ENST00000569406 ANKRD29Q8N6D5 301 aa8.71□□□□□ -1.01
CLK3-226ENST00000569406 MED13LQ71F56 2210 aa8.71□□□□□ -1.01
CLK3-226ENST00000569406 PCNX2A6NKB5 2137 aa8.71□□□□□ -1.01
CLK3-226ENST00000569406 GGTLC3B5MD39 225 aa8.71□□□□□ -1.02
CLK3-226ENST00000569406 NDUFA7O95182 113 aa8.71□□□□□ -1.02
CLK3-226ENST00000569406 H2BFWTQ7Z2G1 175 aa8.71□□□□□ -1.02
CLK3-226ENST00000569406 PGLYRP4Q96LB8 373 aa8.71□□□□□ -1.02
CLK3-226ENST00000569406 DUX3Q96PT4 197 aa8.71□□□□□ -1.02
CLK3-226ENST00000569406 EPDR1Q9UM22 224 aa8.71□□□□□ -1.02
CLK3-226ENST00000569406 PROCRQ9UNN8 238 aa8.71□□□□□ -1.02
CLK3-226ENST00000569406 TCF19Q9Y242 345 aa8.71□□□□□ -1.02
CLK3-226ENST00000569406 IGKV2D-26A0A0A0MRZ7 120 aa8.71□□□□□ -1.02
CLK3-226ENST00000569406 LOC389332A0A1B0GUA5 103 aa8.71□□□□□ -1.02
CLK3-226ENST00000569406 DEFB108AA8MXU0 73 aa8.71□□□□□ -1.02
CLK3-226ENST00000569406 ORM2P19652 201 aa8.71□□□□□ -1.02
CLK3-226ENST00000569406 CA6P23280 308 aa8.71□□□□□ -1.02
CLK3-226ENST00000569406 MPV17P39210 176 aa8.71□□□□□ -1.02
CLK3-226ENST00000569406 PIP4P1Q86T03 277 aa8.71□□□□□ -1.02
CLK3-226ENST00000569406 ADGRG4Q8IZF6 3080 aa8.71□□□□□ -1.02
CLK3-226ENST00000569406 FAM236AA0A1B0GUQ0 79 aa8.7□□□□□ -1.02
CLK3-226ENST00000569406 FAM236BA0A1B0GV22 79 aa8.7□□□□□ -1.02
CLK3-226ENST00000569406 EDDM3AQ14507 147 aa8.7□□□□□ -1.02
CLK3-226ENST00000569406 MRPL32Q9BYC8 188 aaKnown RBP8.7□□□□□ -1.02
CLK3-226ENST00000569406 CACNA1BQ00975 2339 aa8.7□□□□□ -1.02
CLK3-226ENST00000569406 ZFP2Q6ZN57 461 aa8.7□□□□□ -1.02
CLK3-226ENST00000569406 IGHV3-43A0A0B4J1X8 118 aa8.69□□□□□ -1.02
CLK3-226ENST00000569406 IGHV3-43DP0DP04 118 aa8.69□□□□□ -1.02
CLK3-226ENST00000569406 PIP4P2Q8N4L2 257 aa8.69□□□□□ -1.02
CLK3-226ENST00000569406 ATP5LO75964 103 aa8.69□□□□□ -1.02
CLK3-226ENST00000569406 RPL35AP18077 110 aaKnown RBP8.69□□□□□ -1.02
CLK3-226ENST00000569406 HES3Q5TGS1 186 aa8.69□□□□□ -1.02
CLK3-226ENST00000569406 DKK2Q9UBU2 259 aa8.69□□□□□ -1.02
CLK3-226ENST00000569406 WISP2O76076 250 aa8.69□□□□□ -1.02
CLK3-226ENST00000569406 MAGEA5P43359 124 aa8.69□□□□□ -1.02
CLK3-226ENST00000569406 FGFRL1Q8N441 504 aa8.69□□□□□ -1.02
CLK3-226ENST00000569406 IGLV2-8P01709 118 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 OR1C1Q15619 314 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 NABP2Q9BQ15 211 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 PRDM14Q9GZV8 571 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 PLCE1Q9P212 2302 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 SPTAN1Q13813 2472 aaKnown RBP8.68□□□□□ -1.02
CLK3-226ENST00000569406 NGFP01138 241 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 Q6ZS49 121 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 TTTY12Q9BZ98 90 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 PIGBOS1A0A0B4J2F0 54 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 SCGB1C2P0DMR2 95 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 ASIPP42127 132 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 FOXC1Q12948 553 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 LGALS9BQ3B8N2 356 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 TMEM155Q4W5P6 130 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 LGALS9CQ6DKI2 356 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 GTSCR1Q86UQ5 136 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 MDS2Q8NDY4 140 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 WDR83OSQ9Y284 106 aa8.68□□□□□ -1.02
CLK3-226ENST00000569406 TINCRA0A1B0GVN0 87 aa8.67□□□□□ -1.02
CLK3-226ENST00000569406 HOXA3O43365 443 aaPredicted RBP8.67□□□□□ -1.02
CLK3-226ENST00000569406 UTF1Q5T230 341 aa8.67□□□□□ -1.02
CLK3-226ENST00000569406 Q6Q795 121 aa8.67□□□□□ -1.02
CLK3-226ENST00000569406 RNF125Q96EQ8 232 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms