RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 TMPRSS5Q9H3S3 457 aa7.93□□□□□ -1.14
CLK3-222ENST00000568232 PFDN2Q9UHV9 154 aa7.93□□□□□ -1.14
CLK3-222ENST00000568232 PLA2G10O15496 165 aa7.92□□□□□ -1.14
CLK3-222ENST00000568232 SPCS3P61009 180 aa7.92□□□□□ -1.14
CLK3-222ENST00000568232 SP6Q3SY56 376 aa7.92□□□□□ -1.14
CLK3-222ENST00000568232 ZNF493Q6ZR52 646 aa7.92□□□□□ -1.14
CLK3-222ENST00000568232 TMEM256Q8N2U0 113 aa7.92□□□□□ -1.14
CLK3-222ENST00000568232 ARRDC1Q8N5I2 433 aa7.92□□□□□ -1.14
CLK3-222ENST00000568232 SLC24A4Q8NFF2 622 aa7.92□□□□□ -1.14
CLK3-222ENST00000568232 TMEM263Q8WUH6 116 aaKnown RBP7.92□□□□□ -1.14
CLK3-222ENST00000568232 SMIM4Q8WVI0 70 aa7.92□□□□□ -1.14
CLK3-222ENST00000568232 MSRB1Q9NZV6 116 aa7.92□□□□□ -1.14
CLK3-222ENST00000568232 IGKV1D-37A0A075B6S9 117 aa7.91□□□□□ -1.14
CLK3-222ENST00000568232 TRAV8-2A0A0B4J237 113 aa7.91□□□□□ -1.14
CLK3-222ENST00000568232 ADAP1O75689 374 aa7.91□□□□□ -1.14
CLK3-222ENST00000568232 CCNKO75909 580 aa7.91□□□□□ -1.14
CLK3-222ENST00000568232 KRTAP10-4P60372 401 aaPredicted RBP7.91□□□□□ -1.14
CLK3-222ENST00000568232 RHOBP62745 196 aa7.91□□□□□ -1.14
CLK3-222ENST00000568232 OR2F1Q13607 317 aa7.91□□□□□ -1.14
CLK3-222ENST00000568232 ETFRF1Q6IPR1 90 aa7.91□□□□□ -1.14
CLK3-222ENST00000568232 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.91□□□□□ -1.14
CLK3-222ENST00000568232 SLC25A32Q9H2D1 315 aa7.91□□□□□ -1.14
CLK3-222ENST00000568232 PAIP2BQ9ULR5 123 aaKnown RBP7.91□□□□□ -1.14
CLK3-222ENST00000568232 LRCOL1A6NCL2 159 aa7.9□□□□□ -1.14
CLK3-222ENST00000568232 ZNF98A6NK75 572 aa7.9□□□□□ -1.14
CLK3-222ENST00000568232 ZFP92A6NM28 416 aa7.9□□□□□ -1.14
CLK3-222ENST00000568232 NPIPB6E9PJ23 425 aa7.9□□□□□ -1.14
CLK3-222ENST00000568232 INMT-MINDY4F8WBC2 141 aa7.9□□□□□ -1.14
CLK3-222ENST00000568232 PRAF2O60831 178 aa7.9□□□□□ -1.14
CLK3-222ENST00000568232 RLN2P04090 185 aa7.9□□□□□ -1.14
CLK3-222ENST00000568232 PGAM2P15259 253 aa7.9□□□□□ -1.14
CLK3-222ENST00000568232 MEOX2P50222 304 aa7.9□□□□□ -1.14
CLK3-222ENST00000568232 UCP3P55916 312 aa7.9□□□□□ -1.14
CLK3-222ENST00000568232 KLF9Q13886 244 aaPredicted RBP7.9□□□□□ -1.14
CLK3-222ENST00000568232 KIR3DS1Q14943 382 aa7.9□□□□□ -1.14
CLK3-222ENST00000568232 RNASE11Q8TAA1 199 aaKnown RBP7.9□□□□□ -1.14
CLK3-222ENST00000568232 TRIM63Q969Q1 353 aa7.9□□□□□ -1.14
CLK3-222ENST00000568232 RRNAD1Q96FB5 475 aaKnown RBP7.9□□□□□ -1.14
CLK3-222ENST00000568232 SLC25A22Q9H936 323 aa7.9□□□□□ -1.14
CLK3-222ENST00000568232 C3orf85A0A1B0GTC6 90 aa7.89□□□□□ -1.15
CLK3-222ENST00000568232 LINC00854A0A1B0GVQ3 168 aa7.89□□□□□ -1.15
CLK3-222ENST00000568232 CEBPZOSA8MTT3 80 aa7.89□□□□□ -1.15
CLK3-222ENST00000568232 GALR1P47211 349 aa7.89□□□□□ -1.15
CLK3-222ENST00000568232 PIGPP57054 158 aa7.89□□□□□ -1.15
CLK3-222ENST00000568232 HIST1H1AQ02539 215 aaPredicted RBP7.89□□□□□ -1.15
CLK3-222ENST00000568232 AARDQ4LEZ3 155 aa7.89□□□□□ -1.15
CLK3-222ENST00000568232 SAMD13Q5VXD3 122 aa7.89□□□□□ -1.15
CLK3-222ENST00000568232 Q6ZTI0 123 aa7.89□□□□□ -1.15
CLK3-222ENST00000568232 ZBTB8BQ8NAP8 495 aaPredicted RBP7.89□□□□□ -1.15
CLK3-222ENST00000568232 NTN5Q8WTR8 489 aaPredicted RBP7.89□□□□□ -1.15
CLK3-222ENST00000568232 PPP1R14DQ9NXH3 145 aa7.89□□□□□ -1.15
CLK3-222ENST00000568232 LY96Q9Y6Y9 160 aa7.89□□□□□ -1.15
CLK3-222ENST00000568232 TRAV9-2A0A087WT02 112 aa7.88□□□□□ -1.15
CLK3-222ENST00000568232 SNRPGP15A8MWD9 76 aa7.88□□□□□ -1.15
CLK3-222ENST00000568232 PAX4O43316 350 aa7.88□□□□□ -1.15
CLK3-222ENST00000568232 ATG12O94817 140 aa7.88□□□□□ -1.15
CLK3-222ENST00000568232 RND3P61587 244 aa7.88□□□□□ -1.15
CLK3-222ENST00000568232 FGL1Q08830 312 aa7.88□□□□□ -1.15
CLK3-222ENST00000568232 GAMTQ14353 236 aa7.88□□□□□ -1.15
CLK3-222ENST00000568232 LYPD5Q6UWN5 251 aa7.88□□□□□ -1.15
CLK3-222ENST00000568232 ZNF738Q8NE65 137 aa7.88□□□□□ -1.15
CLK3-222ENST00000568232 OR52E5Q8NH55 327 aa7.88□□□□□ -1.15
CLK3-222ENST00000568232 GPX8Q8TED1 209 aa7.88□□□□□ -1.15
CLK3-222ENST00000568232 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.88□□□□□ -1.15
CLK3-222ENST00000568232 PKHD1L1Q86WI1 4243 aa7.88□□□□□ -1.15
CLK3-222ENST00000568232 KRTAP4-8A0A0G2JLE6 195 aa7.87□□□□□ -1.15
CLK3-222ENST00000568232 H7BYZ3 331 aa7.87□□□□□ -1.15
CLK3-222ENST00000568232 TCRBP04435 133 aa7.87□□□□□ -1.15
CLK3-222ENST00000568232 PRSS3P35030 304 aa7.87□□□□□ -1.15
CLK3-222ENST00000568232 RCVRNP35243 200 aa7.87□□□□□ -1.15
CLK3-222ENST00000568232 ZFP69Q49AA0 526 aa7.87□□□□□ -1.15
CLK3-222ENST00000568232 NMSQ5H8A3 153 aa7.87□□□□□ -1.15
CLK3-222ENST00000568232 WFDC10BQ8IUB3 73 aa7.87□□□□□ -1.15
CLK3-222ENST00000568232 TCTE3Q8IZS6 198 aa7.87□□□□□ -1.15
CLK3-222ENST00000568232 Q8N814 137 aa7.87□□□□□ -1.15
CLK3-222ENST00000568232 OR8A1Q8NGG7 326 aa7.87□□□□□ -1.15
CLK3-222ENST00000568232 OR52I2Q8NH67 350 aa7.87□□□□□ -1.15
CLK3-222ENST00000568232 IL22RA2Q969J5 263 aa7.87□□□□□ -1.15
CLK3-222ENST00000568232 ANKRD20A5PA0PJZ0 165 aa7.86□□□□□ -1.15
CLK3-222ENST00000568232 C7orf66A4D0T2 115 aa7.86□□□□□ -1.15
CLK3-222ENST00000568232 SNURFLB1AK76 121 aa7.86□□□□□ -1.15
CLK3-222ENST00000568232 C1QBP02746 253 aa7.86□□□□□ -1.15
CLK3-222ENST00000568232 OR5AC1P0C628 307 aa7.86□□□□□ -1.15
CLK3-222ENST00000568232 CDKN1BP46527 198 aa7.86□□□□□ -1.15
CLK3-222ENST00000568232 RRAS2P62070 204 aaPredicted RBP7.86□□□□□ -1.15
CLK3-222ENST00000568232 MEF2DQ14814 521 aa7.86□□□□□ -1.15
CLK3-222ENST00000568232 Q6ZSA8 131 aa7.86□□□□□ -1.15
CLK3-222ENST00000568232 CCDC28AQ8IWP9 274 aa7.86□□□□□ -1.15
CLK3-222ENST00000568232 LINC00467Q9BRT7 94 aa7.86□□□□□ -1.15
CLK3-222ENST00000568232 PARD6GQ9BYG4 376 aaPredicted RBP7.86□□□□□ -1.15
CLK3-222ENST00000568232 GPN1Q9HCN4 374 aaPredicted RBP7.86□□□□□ -1.15
CLK3-222ENST00000568232 MCUBQ9NWR8 336 aa7.86□□□□□ -1.15
CLK3-222ENST00000568232 MTFP1Q9UDX5 166 aa7.86□□□□□ -1.15
CLK3-222ENST00000568232 CACNG5Q9UF02 275 aa7.86□□□□□ -1.15
CLK3-222ENST00000568232 ICOSQ9Y6W8 199 aa7.86□□□□□ -1.15
CLK3-222ENST00000568232 TRGV2A0A075B6R0 118 aa7.85□□□□□ -1.15
CLK3-222ENST00000568232 PSCAO43653 123 aa7.85□□□□□ -1.15
CLK3-222ENST00000568232 TBPP20226 339 aa7.85□□□□□ -1.15
CLK3-222ENST00000568232 TAS2R19P59542 299 aa7.85□□□□□ -1.15
CLK3-222ENST00000568232 LHFPL5Q8TAF8 219 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms