RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 HLA-DMBP28068 263 aa13.5□□□□□ -0.25
CLN3-227ENST00000567495 PRR20EP86478 221 aa13.5□□□□□ -0.25
CLN3-227ENST00000567495 PRR20CP86479 221 aa13.5□□□□□ -0.25
CLN3-227ENST00000567495 PRR20DP86480 221 aa13.5□□□□□ -0.25
CLN3-227ENST00000567495 PRR20BP86481 221 aa13.5□□□□□ -0.25
CLN3-227ENST00000567495 PRR20AP86496 221 aa13.5□□□□□ -0.25
CLN3-227ENST00000567495 LCN15Q6UWW0 184 aa13.5□□□□□ -0.25
CLN3-227ENST00000567495 TMEM37Q8WXS4 190 aa13.5□□□□□ -0.25
CLN3-227ENST00000567495 LYSTQ99698 3801 aa13.5□□□□□ -0.25
CLN3-227ENST00000567495 SLC35B3Q9H1N7 401 aa13.5□□□□□ -0.25
CLN3-227ENST00000567495 UBE2L5PA0A1B0GUS4 154 aa13.49□□□□□ -0.25
CLN3-227ENST00000567495 MRPS12O15235 138 aaKnown RBP13.49□□□□□ -0.25
CLN3-227ENST00000567495 CNN1P51911 297 aaKnown RBP13.49□□□□□ -0.25
CLN3-227ENST00000567495 FXYD7P58549 80 aa13.49□□□□□ -0.25
CLN3-227ENST00000567495 BAXQ07812 192 aa13.49□□□□□ -0.25
CLN3-227ENST00000567495 RNF182Q8N6D2 247 aa13.49□□□□□ -0.25
CLN3-227ENST00000567495 SLC50A1Q9BRV3 221 aa13.49□□□□□ -0.25
CLN3-227ENST00000567495 RFNGQ9Y644 331 aa13.49□□□□□ -0.25
CLN3-227ENST00000567495 TEX48A0A1B0GUV7 120 aa13.48□□□□□ -0.25
CLN3-227ENST00000567495 SIX6O95475 246 aa13.48□□□□□ -0.25
CLN3-227ENST00000567495 LY6G6CO95867 125 aa13.48□□□□□ -0.25
CLN3-227ENST00000567495 B2MP61769 119 aa13.48□□□□□ -0.25
CLN3-227ENST00000567495 PSG3Q16557 428 aa13.48□□□□□ -0.25
CLN3-227ENST00000567495 MIC13Q5XKP0 118 aa13.48□□□□□ -0.25
CLN3-227ENST00000567495 IGFL4Q6B9Z1 124 aa13.48□□□□□ -0.25
CLN3-227ENST00000567495 AMTNQ6UX39 209 aa13.48□□□□□ -0.25
CLN3-227ENST00000567495 IGF2BP2-AS1Q96M15 143 aa13.48□□□□□ -0.25
CLN3-227ENST00000567495 SLC39A9Q9NUM3 307 aa13.48□□□□□ -0.25
CLN3-227ENST00000567495 IGHV3OR16-12A0A075B7B8 117 aa13.47□□□□□ -0.25
CLN3-227ENST00000567495 TRAV10A0A0B4J240 114 aa13.47□□□□□ -0.25
CLN3-227ENST00000567495 SSNA1O43805 119 aa13.47□□□□□ -0.25
CLN3-227ENST00000567495 OPCMLQ14982 345 aa13.47□□□□□ -0.25
CLN3-227ENST00000567495 GUK1Q16774 197 aa13.47□□□□□ -0.25
CLN3-227ENST00000567495 OR8A1Q8NGG7 326 aa13.47□□□□□ -0.25
CLN3-227ENST00000567495 ZNF331Q9NQX6 463 aaPredicted RBP13.47□□□□□ -0.25
CLN3-227ENST00000567495 PXMP4Q9Y6I8 212 aa13.47□□□□□ -0.25
CLN3-227ENST00000567495 DNAH1Q9P2D7 4330 aa13.46□□□□□ -0.25
CLN3-227ENST00000567495 HBE1P02100 147 aa13.46□□□□□ -0.25
CLN3-227ENST00000567495 PET100P0DJ07 73 aa13.46□□□□□ -0.25
CLN3-227ENST00000567495 FGF7P21781 194 aa13.46□□□□□ -0.25
CLN3-227ENST00000567495 OR11H7Q8NGC8 314 aa13.46□□□□□ -0.25
CLN3-227ENST00000567495 PLECQ15149 4684 aaKnown RBP13.45□□□□□ -0.26
CLN3-227ENST00000567495 SPART-AS1P0CW21 52 aa13.45□□□□□ -0.26
CLN3-227ENST00000567495 IGLC2P0DOY2 106 aa13.45□□□□□ -0.26
CLN3-227ENST00000567495 H2BFSP57053 126 aa13.45□□□□□ -0.26
CLN3-227ENST00000567495 LRRC37A5PQ49AS3 106 aa13.45□□□□□ -0.26
CLN3-227ENST00000567495 LGALS9CQ6DKI2 356 aa13.45□□□□□ -0.26
CLN3-227ENST00000567495 Q6ZTC4 211 aa13.45□□□□□ -0.26
CLN3-227ENST00000567495 C1orf158Q8N1D5 194 aa13.45□□□□□ -0.26
CLN3-227ENST00000567495 OR5C1Q8NGR4 320 aa13.45□□□□□ -0.26
CLN3-227ENST00000567495 PPP1R1CQ8WVI7 109 aa13.45□□□□□ -0.26
CLN3-227ENST00000567495 RPUSD4Q96CM3 377 aaKnown RBP13.45□□□□□ -0.26
CLN3-227ENST00000567495 TMEM208Q9BTX3 173 aa13.45□□□□□ -0.26
CLN3-227ENST00000567495 KCNIP2Q9NS61 270 aa13.45□□□□□ -0.26
CLN3-227ENST00000567495 PPP1R14DQ9NXH3 145 aa13.45□□□□□ -0.26
CLN3-227ENST00000567495 BOLA2-SMG1P6H3BVE0 249 aa13.44□□□□□ -0.26
CLN3-227ENST00000567495 INSP01308 110 aa13.44□□□□□ -0.26
CLN3-227ENST00000567495 HIST1H1AQ02539 215 aaPredicted RBP13.44□□□□□ -0.26
CLN3-227ENST00000567495 NHLH2Q02577 135 aa13.44□□□□□ -0.26
CLN3-227ENST00000567495 RRN3P1Q2M238 152 aa13.44□□□□□ -0.26
CLN3-227ENST00000567495 C12orf74Q32Q52 190 aa13.44□□□□□ -0.26
CLN3-227ENST00000567495 NPCDR1Q9BY65 106 aa13.44□□□□□ -0.26
CLN3-227ENST00000567495 OR5AC2Q9NZP5 309 aa13.44□□□□□ -0.26
CLN3-227ENST00000567495 IGLL5B9A064 214 aa13.43□□□□□ -0.26
CLN3-227ENST00000567495 H0YIZ8 118 aa13.43□□□□□ -0.26
CLN3-227ENST00000567495 RHOBP62745 196 aa13.43□□□□□ -0.26
CLN3-227ENST00000567495 MORN5Q5VZ52 161 aa13.43□□□□□ -0.26
CLN3-227ENST00000567495 CELA1Q9UNI1 258 aa13.43□□□□□ -0.26
CLN3-227ENST00000567495 ZNF253O75346 499 aa13.42□□□□□ -0.26
CLN3-227ENST00000567495 EMP1P54849 157 aa13.42□□□□□ -0.26
CLN3-227ENST00000567495 SPINK13Q1W4C9 94 aa13.42□□□□□ -0.26
CLN3-227ENST00000567495 SAT2Q96F10 170 aaPredicted RBP13.42□□□□□ -0.26
CLN3-227ENST00000567495 RNF126Q9BV68 326 aa13.42□□□□□ -0.26
CLN3-227ENST00000567495 TMEM14CQ9P0S9 112 aa13.42□□□□□ -0.26
CLN3-227ENST00000567495 ALMS1Q8TCU4 4167 aa13.42□□□□□ -0.26
CLN3-227ENST00000567495 DEFB131BA0A096LNP1 70 aa13.41□□□□□ -0.26
CLN3-227ENST00000567495 LOC102723971A0A1B0GUV8 181 aa13.41□□□□□ -0.26
CLN3-227ENST00000567495 H3BQ15 152 aa13.41□□□□□ -0.26
CLN3-227ENST00000567495 M0R2Z0 102 aa13.41□□□□□ -0.26
CLN3-227ENST00000567495 MPC2O95563 127 aa13.41□□□□□ -0.26
CLN3-227ENST00000567495 CLINT1Q14677 625 aa13.41□□□□□ -0.26
CLN3-227ENST00000567495 TMEM256Q8N2U0 113 aa13.41□□□□□ -0.26
CLN3-227ENST00000567495 OR10J6PQ8NGY7 276 aa13.41□□□□□ -0.26
CLN3-227ENST00000567495 THAP6Q8TBB0 222 aa13.41□□□□□ -0.26
CLN3-227ENST00000567495 DKK2Q9UBU2 259 aa13.41□□□□□ -0.26
CLN3-227ENST00000567495 TRAV5A0A0B4J249 113 aa13.4□□□□□ -0.26
CLN3-227ENST00000567495 CRXO43186 299 aaPredicted RBP13.4□□□□□ -0.26
CLN3-227ENST00000567495 PTTG1O95997 202 aa13.4□□□□□ -0.26
CLN3-227ENST00000567495 TSPOP30536 169 aa13.4□□□□□ -0.26
CLN3-227ENST00000567495 WDR61Q9GZS3 305 aaKnown RBP13.4□□□□□ -0.26
CLN3-227ENST00000567495 C17orf112F2Z3M2 114 aa13.39□□□□□ -0.27
CLN3-227ENST00000567495 SLC17A3O00476 420 aa13.39□□□□□ -0.27
CLN3-227ENST00000567495 SNRPCP09234 159 aaKnown RBP13.39□□□□□ -0.27
CLN3-227ENST00000567495 HIST1H1EP10412 219 aaKnown RBP13.39□□□□□ -0.27
CLN3-227ENST00000567495 PDE6HQ13956 83 aa13.39□□□□□ -0.27
CLN3-227ENST00000567495 OXA1LQ15070 435 aa13.39□□□□□ -0.27
CLN3-227ENST00000567495 ATP5SQ99766 215 aa13.39□□□□□ -0.27
CLN3-227ENST00000567495 NIPSNAP3BQ9BS92 247 aa13.39□□□□□ -0.27
CLN3-227ENST00000567495 APLNQ9ULZ1 77 aa13.39□□□□□ -0.27
CLN3-227ENST00000567495 TRBV19A0A075B6N1 114 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms