RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 PRR20BP86481 221 aa13.18□□□□□ -0.3
CLN3-214ENST00000565140 PRR20AP86496 221 aa13.18□□□□□ -0.3
CLN3-214ENST00000565140 RAB31Q13636 194 aa13.18□□□□□ -0.3
CLN3-214ENST00000565140 OPCMLQ14982 345 aa13.18□□□□□ -0.3
CLN3-214ENST00000565140 C10orf113Q5VZT2 155 aa13.18□□□□□ -0.3
CLN3-214ENST00000565140 OR11H7Q8NGC8 314 aa13.18□□□□□ -0.3
CLN3-214ENST00000565140 MARVELD1Q9BSK0 173 aa13.18□□□□□ -0.3
CLN3-214ENST00000565140 DNAJC4Q9NNZ3 241 aa13.18□□□□□ -0.3
CLN3-214ENST00000565140 VPS13DQ5THJ4 4388 aa13.18□□□□□ -0.3
CLN3-214ENST00000565140 UBE2L5PA0A1B0GUS4 154 aa13.17□□□□□ -0.3
CLN3-214ENST00000565140 DUSP14O95147 198 aaKnown RBP13.17□□□□□ -0.3
CLN3-214ENST00000565140 EMP1P54849 157 aa13.17□□□□□ -0.3
CLN3-214ENST00000565140 PSG3Q16557 428 aa13.17□□□□□ -0.3
CLN3-214ENST00000565140 LGALS9CQ6DKI2 356 aa13.17□□□□□ -0.3
CLN3-214ENST00000565140 STX12Q86Y82 276 aa13.17□□□□□ -0.3
CLN3-214ENST00000565140 LRRC20Q8TCA0 184 aa13.17□□□□□ -0.3
CLN3-214ENST00000565140 APLNQ9ULZ1 77 aa13.17□□□□□ -0.3
CLN3-214ENST00000565140 GOLT1BQ9Y3E0 138 aa13.17□□□□□ -0.3
CLN3-214ENST00000565140 FRAS1Q86XX4 4008 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 TRAV10A0A0B4J240 114 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 TRAV5A0A0B4J249 113 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 H3BTX0 84 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 M0R2Z0 102 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 CRXO43186 299 aaPredicted RBP13.16□□□□□ -0.3
CLN3-214ENST00000565140 PRAF2O60831 178 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 HBG1P69891 147 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 HBG2P69892 147 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 NHLH2Q02577 135 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 BAXQ07812 192 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 SPINK13Q1W4C9 94 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 Q6ZRG5 221 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 OR8A1Q8NGG7 326 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 IGF2BP2-AS1Q96M15 143 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 NMES1Q9C002 83 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 BATF3Q9NR55 127 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 RNF24Q9Y225 148 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 RFNGQ9Y644 331 aa13.16□□□□□ -0.3
CLN3-214ENST00000565140 H0YIZ8 118 aa13.15□□□□□ -0.3
CLN3-214ENST00000565140 RPL29P47914 159 aaKnown RBP13.15□□□□□ -0.3
CLN3-214ENST00000565140 H2BFSP57053 126 aa13.15□□□□□ -0.3
CLN3-214ENST00000565140 HIST1H1AQ02539 215 aaPredicted RBP13.15□□□□□ -0.3
CLN3-214ENST00000565140 BPIFA4PQ86YQ2 179 aa13.15□□□□□ -0.3
CLN3-214ENST00000565140 RPP25LQ8N5L8 163 aaKnown RBP13.15□□□□□ -0.3
CLN3-214ENST00000565140 ZNF331Q9NQX6 463 aaPredicted RBP13.15□□□□□ -0.3
CLN3-214ENST00000565140 SLC39A9Q9NUM3 307 aa13.15□□□□□ -0.3
CLN3-214ENST00000565140 OR5AC2Q9NZP5 309 aa13.15□□□□□ -0.3
CLN3-214ENST00000565140 TMEM189A5PLL7 270 aa13.14□□□□□ -0.31
CLN3-214ENST00000565140 H3BQ15 152 aa13.14□□□□□ -0.31
CLN3-214ENST00000565140 SLC17A3O00476 420 aa13.14□□□□□ -0.31
CLN3-214ENST00000565140 PRM2P04554 102 aa13.14□□□□□ -0.31
CLN3-214ENST00000565140 IGLC2P0DOY2 106 aa13.14□□□□□ -0.31
CLN3-214ENST00000565140 FGF7P21781 194 aa13.14□□□□□ -0.31
CLN3-214ENST00000565140 TCTAP57738 103 aa13.14□□□□□ -0.31
CLN3-214ENST00000565140 ATP6V1FQ16864 119 aa13.14□□□□□ -0.31
CLN3-214ENST00000565140 LRRC37A5PQ49AS3 106 aa13.14□□□□□ -0.31
CLN3-214ENST00000565140 LCN15Q6UWW0 184 aa13.14□□□□□ -0.31
CLN3-214ENST00000565140 CHAC2Q8WUX2 184 aa13.14□□□□□ -0.31
CLN3-214ENST00000565140 RPUSD4Q96CM3 377 aaKnown RBP13.14□□□□□ -0.31
CLN3-214ENST00000565140 PLA2G2EQ9NZK7 142 aa13.14□□□□□ -0.31
CLN3-214ENST00000565140 DEFB131BA0A096LNP1 70 aa13.13□□□□□ -0.31
CLN3-214ENST00000565140 HBE1P02100 147 aa13.13□□□□□ -0.31
CLN3-214ENST00000565140 SPART-AS1P0CW21 52 aa13.13□□□□□ -0.31
CLN3-214ENST00000565140 CXCL2P19875 107 aa13.13□□□□□ -0.31
CLN3-214ENST00000565140 DEFA1P59665 94 aa13.13□□□□□ -0.31
CLN3-214ENST00000565140 DEFA3P59666 94 aa13.13□□□□□ -0.31
CLN3-214ENST00000565140 B2MP61769 119 aa13.13□□□□□ -0.31
CLN3-214ENST00000565140 BAP18Q8IXM2 172 aa13.13□□□□□ -0.31
CLN3-214ENST00000565140 OR1L4Q8NGR5 311 aa13.13□□□□□ -0.31
CLN3-214ENST00000565140 SAT2Q96F10 170 aaPredicted RBP13.13□□□□□ -0.31
CLN3-214ENST00000565140 DKK2Q9UBU2 259 aa13.13□□□□□ -0.31
CLN3-214ENST00000565140 PXMP4Q9Y6I8 212 aa13.13□□□□□ -0.31
CLN3-214ENST00000565140 IGHV4-4A0A075B6R2 117 aa13.12□□□□□ -0.31
CLN3-214ENST00000565140 TRAV12-2A0A075B6T6 113 aa13.12□□□□□ -0.31
CLN3-214ENST00000565140 LOC102723971A0A1B0GUV8 181 aa13.12□□□□□ -0.31
CLN3-214ENST00000565140 E5RGE8 158 aa13.12□□□□□ -0.31
CLN3-214ENST00000565140 AMBPP02760 352 aa13.12□□□□□ -0.31
CLN3-214ENST00000565140 RLN2P04090 185 aa13.12□□□□□ -0.31
CLN3-214ENST00000565140 RHOBP62745 196 aa13.12□□□□□ -0.31
CLN3-214ENST00000565140 RRN3P1Q2M238 152 aa13.12□□□□□ -0.31
CLN3-214ENST00000565140 FAM222AQ5U5X8 452 aa13.12□□□□□ -0.31
CLN3-214ENST00000565140 OR5C1Q8NGR4 320 aa13.12□□□□□ -0.31
CLN3-214ENST00000565140 PFDN5Q99471 154 aa13.12□□□□□ -0.31
CLN3-214ENST00000565140 SLC50A1Q9BRV3 221 aa13.12□□□□□ -0.31
CLN3-214ENST00000565140 TMEM208Q9BTX3 173 aa13.12□□□□□ -0.31
CLN3-214ENST00000565140 ZNF705GA8MUZ8 300 aaPredicted RBP13.11□□□□□ -0.31
CLN3-214ENST00000565140 PRAC2D3DTV9 90 aa13.11□□□□□ -0.31
CLN3-214ENST00000565140 BOLA2-SMG1P6H3BVE0 249 aa13.11□□□□□ -0.31
CLN3-214ENST00000565140 INSP01308 110 aa13.11□□□□□ -0.31
CLN3-214ENST00000565140 CYCSP99999 105 aaKnown RBP13.11□□□□□ -0.31
CLN3-214ENST00000565140 THAP6Q8TBB0 222 aa13.11□□□□□ -0.31
CLN3-214ENST00000565140 RNF126Q9BV68 326 aa13.11□□□□□ -0.31
CLN3-214ENST00000565140 NPCDR1Q9BY65 106 aa13.11□□□□□ -0.31
CLN3-214ENST00000565140 SLC25A31Q9H0C2 315 aa13.11□□□□□ -0.31
CLN3-214ENST00000565140 YTHDF2Q9Y5A9 579 aaKnown RBP13.11□□□□□ -0.31
CLN3-214ENST00000565140 DNAH6Q9C0G6 4158 aa13.11□□□□□ -0.31
CLN3-214ENST00000565140 SSNA1O43805 119 aa13.1□□□□□ -0.31
CLN3-214ENST00000565140 MPDU1O75352 247 aa13.1□□□□□ -0.31
CLN3-214ENST00000565140 GCSAMLQ5JQS6 135 aa13.1□□□□□ -0.31
CLN3-214ENST00000565140 PPP1R1CQ8WVI7 109 aa13.1□□□□□ -0.31
CLN3-214ENST00000565140 ZNF586Q9NXT0 402 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms