RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 CLINT1Q14677 625 aa9.73□□□□□ -0.85
CLK3-213ENST00000563842 PSG3Q16557 428 aa9.73□□□□□ -0.85
CLK3-213ENST00000563842 GUK1Q16774 197 aa9.73□□□□□ -0.85
CLK3-213ENST00000563842 C11orf45Q8TAV5 145 aa9.73□□□□□ -0.85
CLK3-213ENST00000563842 RNF126Q9BV68 326 aa9.73□□□□□ -0.85
CLK3-213ENST00000563842 MED28Q9H204 178 aa9.73□□□□□ -0.85
CLK3-213ENST00000563842 KLK5Q9Y337 293 aaPredicted RBP9.73□□□□□ -0.85
CLK3-213ENST00000563842 EPPK1P58107 5090 aaKnown RBP9.73□□□□□ -0.85
CLK3-213ENST00000563842 TRAV8-2A0A0B4J237 113 aa9.72□□□□□ -0.85
CLK3-213ENST00000563842 SMIM9A6NGZ8 99 aa9.72□□□□□ -0.85
CLK3-213ENST00000563842 A8MTW9 85 aa9.72□□□□□ -0.85
CLK3-213ENST00000563842 F6UB75 175 aa9.72□□□□□ -0.85
CLK3-213ENST00000563842 CXCL3P19876 107 aa9.72□□□□□ -0.85
CLK3-213ENST00000563842 RPL12P30050 165 aaKnown RBP9.72□□□□□ -0.85
CLK3-213ENST00000563842 DEFB1P60022 68 aa9.72□□□□□ -0.85
CLK3-213ENST00000563842 Q8NAQ8 132 aa9.72□□□□□ -0.85
CLK3-213ENST00000563842 THAP6Q8TBB0 222 aa9.72□□□□□ -0.85
CLK3-213ENST00000563842 NEU1Q99519 415 aa9.72□□□□□ -0.85
CLK3-213ENST00000563842 HRH4Q9H3N8 390 aa9.72□□□□□ -0.85
CLK3-213ENST00000563842 HSPB11Q9Y547 144 aa9.72□□□□□ -0.85
CLK3-213ENST00000563842 X6R8D5 127 aa9.72□□□□□ -0.85
CLK3-213ENST00000563842 IGHV4-28A0A0C4DH34 117 aa9.71□□□□□ -0.86
CLK3-213ENST00000563842 LCE6AA0A183 80 aa9.71□□□□□ -0.86
CLK3-213ENST00000563842 IFNA5P01569 189 aa9.71□□□□□ -0.86
CLK3-213ENST00000563842 CEMP1Q6PRD7 247 aaPredicted RBP9.71□□□□□ -0.86
CLK3-213ENST00000563842 RNF182Q8N6D2 247 aa9.71□□□□□ -0.86
CLK3-213ENST00000563842 ASB13Q8WXK3 278 aa9.71□□□□□ -0.86
CLK3-213ENST00000563842 ATP5SQ99766 215 aa9.71□□□□□ -0.86
CLK3-213ENST00000563842 WDR61Q9GZS3 305 aaKnown RBP9.71□□□□□ -0.86
CLK3-213ENST00000563842 ZNF331Q9NQX6 463 aaPredicted RBP9.71□□□□□ -0.86
CLK3-213ENST00000563842 MBD2Q9UBB5 411 aa9.71□□□□□ -0.86
CLK3-213ENST00000563842 GOLT1BQ9Y3E0 138 aa9.71□□□□□ -0.86
CLK3-213ENST00000563842 DEFB4AO15263 64 aa9.7□□□□□ -0.86
CLK3-213ENST00000563842 CNN1P51911 297 aaKnown RBP9.7□□□□□ -0.86
CLK3-213ENST00000563842 FXYD7P58549 80 aa9.7□□□□□ -0.86
CLK3-213ENST00000563842 RGS21Q2M5E4 152 aa9.7□□□□□ -0.86
CLK3-213ENST00000563842 IGFL4Q6B9Z1 124 aa9.7□□□□□ -0.86
CLK3-213ENST00000563842 ZNF705AQ6ZN79 300 aaPredicted RBP9.7□□□□□ -0.86
CLK3-213ENST00000563842 OR8A1Q8NGG7 326 aa9.7□□□□□ -0.86
CLK3-213ENST00000563842 SCGB1C1Q8TD33 95 aa9.7□□□□□ -0.86
CLK3-213ENST00000563842 PHLDA1Q8WV24 401 aaPredicted RBP9.7□□□□□ -0.86
CLK3-213ENST00000563842 SLC35B3Q9H1N7 401 aa9.7□□□□□ -0.86
CLK3-213ENST00000563842 PPP1R14DQ9NXH3 145 aa9.7□□□□□ -0.86
CLK3-213ENST00000563842 TMEM189A5PLL7 270 aa9.69□□□□□ -0.86
CLK3-213ENST00000563842 ZNF253O75346 499 aa9.69□□□□□ -0.86
CLK3-213ENST00000563842 RBMY1A1P0DJD3 496 aaKnown RBP9.69□□□□□ -0.86
CLK3-213ENST00000563842 RBMY1CP0DJD4 496 aa9.69□□□□□ -0.86
CLK3-213ENST00000563842 IGLC2P0DOY2 106 aa9.69□□□□□ -0.86
CLK3-213ENST00000563842 RHOBP62745 196 aa9.69□□□□□ -0.86
CLK3-213ENST00000563842 RBMY1FQ15415 496 aaKnown RBP9.69□□□□□ -0.86
CLK3-213ENST00000563842 MORN5Q5VZ52 161 aa9.69□□□□□ -0.86
CLK3-213ENST00000563842 RPUSD4Q96CM3 377 aaKnown RBP9.69□□□□□ -0.86
CLK3-213ENST00000563842 IGF2BP2-AS1Q96M15 143 aa9.69□□□□□ -0.86
CLK3-213ENST00000563842 TMEM14CQ9P0S9 112 aa9.69□□□□□ -0.86
CLK3-213ENST00000563842 STARD9Q9P2P6 4700 aa9.68□□□□□ -0.86
CLK3-213ENST00000563842 IGHV3OR16-12A0A075B7B8 117 aa9.68□□□□□ -0.86
CLK3-213ENST00000563842 TRAV5A0A0B4J249 113 aa9.68□□□□□ -0.86
CLK3-213ENST00000563842 ZNF705FA8MVS1 300 aaPredicted RBP9.68□□□□□ -0.86
CLK3-213ENST00000563842 C11orf94C9JXX5 98 aa9.68□□□□□ -0.86
CLK3-213ENST00000563842 ZNF705DP0CH99 300 aaPredicted RBP9.68□□□□□ -0.86
CLK3-213ENST00000563842 ZNF705BP0CI00 300 aaPredicted RBP9.68□□□□□ -0.86
CLK3-213ENST00000563842 HIST1H1EP10412 219 aaKnown RBP9.68□□□□□ -0.86
CLK3-213ENST00000563842 HLA-DMBP28068 263 aa9.68□□□□□ -0.86
CLK3-213ENST00000563842 NANOS2P60321 138 aaKnown RBP9.68□□□□□ -0.86
CLK3-213ENST00000563842 HIST1H1AQ02539 215 aaPredicted RBP9.68□□□□□ -0.86
CLK3-213ENST00000563842 FCN2Q15485 313 aa9.68□□□□□ -0.86
CLK3-213ENST00000563842 AMTNQ6UX39 209 aa9.68□□□□□ -0.86
CLK3-213ENST00000563842 OR11H7Q8NGC8 314 aa9.68□□□□□ -0.86
CLK3-213ENST00000563842 OR10J6PQ8NGY7 276 aa9.68□□□□□ -0.86
CLK3-213ENST00000563842 TMEM208Q9BTX3 173 aa9.68□□□□□ -0.86
CLK3-213ENST00000563842 MRPL32Q9BYC8 188 aaKnown RBP9.68□□□□□ -0.86
CLK3-213ENST00000563842 PARD6GQ9BYG4 376 aaPredicted RBP9.68□□□□□ -0.86
CLK3-213ENST00000563842 RFNGQ9Y644 331 aa9.68□□□□□ -0.86
CLK3-213ENST00000563842 H3BQ15 152 aa9.67□□□□□ -0.86
CLK3-213ENST00000563842 BOLA2-SMG1P6H3BVE0 249 aa9.67□□□□□ -0.86
CLK3-213ENST00000563842 INSP01308 110 aa9.67□□□□□ -0.86
CLK3-213ENST00000563842 HBE1P02100 147 aa9.67□□□□□ -0.86
CLK3-213ENST00000563842 PDE6HQ13956 83 aa9.67□□□□□ -0.86
CLK3-213ENST00000563842 SAT2Q96F10 170 aaPredicted RBP9.67□□□□□ -0.86
CLK3-213ENST00000563842 SMIM3Q9BZL3 60 aa9.67□□□□□ -0.86
CLK3-213ENST00000563842 PRELID1Q9Y255 219 aa9.67□□□□□ -0.86
CLK3-213ENST00000563842 TIMM9Q9Y5J7 89 aa9.67□□□□□ -0.86
CLK3-213ENST00000563842 TRBV19A0A075B6N1 114 aa9.66□□□□□ -0.86
CLK3-213ENST00000563842 TEX48A0A1B0GUV7 120 aa9.66□□□□□ -0.86
CLK3-213ENST00000563842 SNRPCP09234 159 aaKnown RBP9.66□□□□□ -0.86
CLK3-213ENST00000563842 GIPP09681 153 aaPredicted RBP9.66□□□□□ -0.86
CLK3-213ENST00000563842 SPINK13Q1W4C9 94 aa9.66□□□□□ -0.86
CLK3-213ENST00000563842 GCSAMLQ5JQS6 135 aa9.66□□□□□ -0.86
CLK3-213ENST00000563842 MRPL53Q96EL3 112 aaKnown RBP9.66□□□□□ -0.86
CLK3-213ENST00000563842 ZNF586Q9NXT0 402 aa9.66□□□□□ -0.86
CLK3-213ENST00000563842 H3BTX0 84 aa9.65□□□□□ -0.86
CLK3-213ENST00000563842 M0R2Z0 102 aa9.65□□□□□ -0.86
CLK3-213ENST00000563842 SLC17A3O00476 420 aa9.65□□□□□ -0.86
CLK3-213ENST00000563842 SPART-AS1P0CW21 52 aa9.65□□□□□ -0.86
CLK3-213ENST00000563842 TSPOP30536 169 aa9.65□□□□□ -0.86
CLK3-213ENST00000563842 TCTAP57738 103 aa9.65□□□□□ -0.86
CLK3-213ENST00000563842 ZNF266Q14584 549 aa9.65□□□□□ -0.86
CLK3-213ENST00000563842 RRN3P1Q2M238 152 aa9.65□□□□□ -0.86
CLK3-213ENST00000563842 FFAR4Q5NUL3 377 aa9.65□□□□□ -0.86
CLK3-213ENST00000563842 C1orf158Q8N1D5 194 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms