RNA–Protein interactions for RNA: ENST00000563485.2

HMGB1P33-201, Transcript of high mobility group box 1 pseudogene 33, humanhuman

BASIC

Gene HMGB1P33, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P33-201ENST00000563485 ZNF833PQ6ZTB9 187 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 AKAP14Q86UN6 197 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 CCL4L1Q8NHW4 92 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 TMEM254Q8TBM7 123 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 PATE1Q8WXA2 126 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 DIRC1Q969H9 104 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 TP53RKQ96S44 253 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 TCEAL2Q9H3H9 227 aaPredicted RBP0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 NDUFAF1Q9Y375 327 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 HSPB11Q9Y547 144 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 TECPR2O15040 1411 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 CACNA1BQ00975 2339 aa0.63□□□□□ -2.31
HMGB1P33-201ENST00000563485 IGHV1-58A0A0C4DH39 117 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 A0A1B0GX51 115 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 TCRBV4S1A1TA0A5B7 111 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 TSTD3H0UI37 97 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 CST8O60676 142 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 SCGB1A1P11684 91 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 SRP9P49458 86 aaKnown RBP0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 POLR2HP52434 150 aaKnown RBP0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 ARPP19P56211 112 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 KLRD1Q13241 179 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 ALX1Q15699 326 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 RNASE10Q5GAN6 216 aaKnown RBP0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 IFT20Q8IY31 132 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 Q8N814 137 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 PSMF1Q92530 271 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 MUCL1Q96DR8 90 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 HYLS1Q96M11 299 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 EFCAB11Q9BUY7 163 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 REG4Q9BYZ8 158 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 C6orf62Q9GZU0 229 aaPredicted RBP0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 OTORQ9NRC9 128 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 C19orf12Q9NSK7 152 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 GINS2Q9Y248 185 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 RNF11Q9Y3C5 154 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 MED31Q9Y3C7 131 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 SNURFQ9Y675 71 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 ARHGEF11O15085 1522 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 SCN3AQ9NY46 2000 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 MYLKQ15746 1914 aa0.62□□□□□ -2.31
HMGB1P33-201ENST00000563485 NUP210LQ5VU65 1888 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 PLXNA4Q9HCM2 1894 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 IGKV3-7A0A075B6H7 116 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 IGKV2-40A0A087WW87 121 aaPredicted RBP0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 ZNF736B4DX44 427 aaPredicted RBP0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 KPNA4O00629 521 aaPredicted RBP0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 CCL16O15467 120 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 LYRM1O43325 122 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 NUPR1O60356 82 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 ERC2-IT1O76042 136 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 IGKV2D-40P01614 121 aaPredicted RBP0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 ANGP03950 147 aaKnown RBP0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 CXCL1P09341 107 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 TMBIM6P55061 237 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 MRPS36P82909 103 aaKnown RBP0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 CDK6Q00534 326 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 SAMD13Q5VXD3 122 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 ARPINQ7Z6K5 226 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 OR5AS1Q8N127 324 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 FAM216BQ8N7L0 139 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 OR2T35Q8NGX2 323 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 OR10AG1Q8NH19 301 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 ZNF431Q8TF32 576 aaPredicted RBP0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 NAT14Q8WUY8 206 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 DYDC1Q8WWB3 177 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 POP5Q969H6 163 aaKnown RBP0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 BORCS8Q96FH0 119 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 RMND5BQ96G75 393 aaPredicted RBP0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 MED11Q9P086 117 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 NAT8BQ9UHF3 227 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 MYOFQ9NZM1 2061 aa0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 TNRC6BQ9UPQ9 1833 aaKnown RBP0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 TNRC6AQ8NDV7 1962 aaKnown RBP0.61□□□□□ -2.31
HMGB1P33-201ENST00000563485 MYO18AQ92614 2054 aaKnown RBP0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 BORCS7-ASMTA0A0B4J1R7 106 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 TRAV10A0A0B4J240 114 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 TRAV3A0A0B4J244 114 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 TRBV27A0A0K0K1C4 114 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 hDV103S1A0JD37 113 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 IGKV2-29A2NJV5 120 aaPredicted RBP0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 ARL5CA6NH57 179 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 B4DSR2 109 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 GABARAPH6UMI1 98 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 RER1O15258 196 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 IGHV3-33P01772 117 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 SCTP09683 121 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 CXCL8P10145 99 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 RPS3P23396 243 aaKnown RBP eCLIP0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 S100GP29377 79 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 S100A11P31949 105 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 SDC2P34741 201 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 NDUFA6P56556 154 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 CDK5R1Q15078 307 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 SURF2Q15527 256 aaPredicted RBP0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 ASB16-AS1Q495Z4 193 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 C1orf134Q5TEV5 83 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 CROCCP2Q86T23 111 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 OR4B1Q8NGF8 309 aa0.6□□□□□ -2.31
HMGB1P33-201ENST00000563485 OR5D14Q8NGL3 314 aa0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms