RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 C9orf153Q5TBE3 101 aa2.58□□□□□ -2
VPS35-203ENST00000562420 CFAP126Q5VTH2 177 aa2.58□□□□□ -2
VPS35-203ENST00000562420 TCF23Q7RTU1 214 aa2.58□□□□□ -2
VPS35-203ENST00000562420 SLC25A45Q8N413 288 aa2.58□□□□□ -2
VPS35-203ENST00000562420 SAP25Q8TEE9 199 aa2.58□□□□□ -2
VPS35-203ENST00000562420 DLX4Q92988 240 aaPredicted RBP2.58□□□□□ -2
VPS35-203ENST00000562420 NABP1Q96AH0 204 aa2.58□□□□□ -2
VPS35-203ENST00000562420 TMEM147Q9BVK8 224 aa2.58□□□□□ -2
VPS35-203ENST00000562420 ZNF286AQ9HBT8 521 aa2.58□□□□□ -2
VPS35-203ENST00000562420 OSTCQ9NRP0 149 aa2.58□□□□□ -2
VPS35-203ENST00000562420 TNFRSF19Q9NS68 423 aa2.58□□□□□ -2
VPS35-203ENST00000562420 PRO0461Q9UI25 63 aa2.58□□□□□ -2
VPS35-203ENST00000562420 ZNF835Q9Y2P0 537 aa2.58□□□□□ -2
VPS35-203ENST00000562420 TSC2P49815 1807 aa2.58□□□□□ -2
VPS35-203ENST00000562420 MYLKQ15746 1914 aa2.58□□□□□ -2
VPS35-203ENST00000562420 ALPK3Q96L96 1907 aa2.58□□□□□ -2
VPS35-203ENST00000562420 ANK1P16157 1881 aa2.57□□□□□ -2
VPS35-203ENST00000562420 TRAV12-2A0A075B6T6 113 aa2.57□□□□□ -2
VPS35-203ENST00000562420 SMIM26A0A096LP01 95 aa2.57□□□□□ -2
VPS35-203ENST00000562420 TMED7-TICAM2A0A0A6YYA0 188 aa2.57□□□□□ -2
VPS35-203ENST00000562420 TRAV8-4A0A0B4J246 113 aa2.57□□□□□ -2
VPS35-203ENST00000562420 TRGV8A0A0C4DH27 118 aa2.57□□□□□ -2
VPS35-203ENST00000562420 CTXND1A0A1B0GTU2 59 aa2.57□□□□□ -2
VPS35-203ENST00000562420 CRYM-AS1A6NIL9 109 aa2.57□□□□□ -2
VPS35-203ENST00000562420 A8MWV9 139 aa2.57□□□□□ -2
VPS35-203ENST00000562420 IGLL5B9A064 214 aa2.57□□□□□ -2
VPS35-203ENST00000562420 ATOX1O00244 68 aa2.57□□□□□ -2
VPS35-203ENST00000562420 PIN1P1O15428 100 aa2.57□□□□□ -2
VPS35-203ENST00000562420 PDCD6O75340 191 aa2.57□□□□□ -2
VPS35-203ENST00000562420 LEPROTL1O95214 131 aa2.57□□□□□ -2
VPS35-203ENST00000562420 CPSF4O95639 269 aaKnown RBP2.57□□□□□ -2
VPS35-203ENST00000562420 P01737 135 aa2.57□□□□□ -2
VPS35-203ENST00000562420 RBP4P02753 201 aa2.57□□□□□ -2
VPS35-203ENST00000562420 NBL1P41271 181 aa2.57□□□□□ -2
VPS35-203ENST00000562420 LIM2P55344 173 aa2.57□□□□□ -2
VPS35-203ENST00000562420 DAD1P61803 113 aa2.57□□□□□ -2
VPS35-203ENST00000562420 PMAIP1Q13794 54 aa2.57□□□□□ -2
VPS35-203ENST00000562420 VGLL4Q14135 290 aa2.57□□□□□ -2
VPS35-203ENST00000562420 EBI3Q14213 229 aa2.57□□□□□ -2
VPS35-203ENST00000562420 ZNF141Q15928 474 aa2.57□□□□□ -2
VPS35-203ENST00000562420 RTL8BQ17RB0 113 aa2.57□□□□□ -2
VPS35-203ENST00000562420 LGALS9BQ3B8N2 356 aa2.57□□□□□ -2
VPS35-203ENST00000562420 FAM201AQ5SY85 155 aa2.57□□□□□ -2
VPS35-203ENST00000562420 LGALS9CQ6DKI2 356 aa2.57□□□□□ -2
VPS35-203ENST00000562420 TMEM14EPQ6UXP3 125 aa2.57□□□□□ -2
VPS35-203ENST00000562420 SCGB1D4Q6XE38 83 aa2.57□□□□□ -2
VPS35-203ENST00000562420 C2orf91Q6ZV80 131 aa2.57□□□□□ -2
VPS35-203ENST00000562420 Q6ZVH6 145 aa2.57□□□□□ -2
VPS35-203ENST00000562420 PRSS41Q7RTY9 318 aa2.57□□□□□ -2
VPS35-203ENST00000562420 RPS19BP1Q86WX3 136 aaKnown RBP2.57□□□□□ -2
VPS35-203ENST00000562420 PDPNQ86YL7 162 aa2.57□□□□□ -2
VPS35-203ENST00000562420 CEND1Q8N111 149 aa2.57□□□□□ -2
VPS35-203ENST00000562420 ANKRD29Q8N6D5 301 aa2.57□□□□□ -2
VPS35-203ENST00000562420 TMEM230Q96A57 120 aa2.57□□□□□ -2
VPS35-203ENST00000562420 C20orf78Q9BR46 151 aa2.57□□□□□ -2
VPS35-203ENST00000562420 TMEM222Q9H0R3 208 aa2.57□□□□□ -2
VPS35-203ENST00000562420 ZNF331Q9NQX6 463 aaPredicted RBP2.57□□□□□ -2
VPS35-203ENST00000562420 DEPPQ9NTK1 212 aa2.57□□□□□ -2
VPS35-203ENST00000562420 C21orf62Q9NYP8 219 aa2.57□□□□□ -2
VPS35-203ENST00000562420 ADAMTS9Q9P2N4 1935 aa2.57□□□□□ -2
VPS35-203ENST00000562420 BAZ2BQ9UIF8 2168 aaKnown RBP2.57□□□□□ -2
VPS35-203ENST00000562420 WDR90Q96KV7 1748 aa2.56□□□□□ -2
VPS35-203ENST00000562420 ARFGEF1Q9Y6D6 1849 aa2.56□□□□□ -2
VPS35-203ENST00000562420 ANKRD12Q6UB98 2062 aa2.56□□□□□ -2
VPS35-203ENST00000562420 ZNF318Q5VUA4 2279 aa2.56□□□□□ -2
VPS35-203ENST00000562420 TRAV27A0A087WT01 109 aa2.56□□□□□ -2
VPS35-203ENST00000562420 TRAV8-2A0A0B4J237 113 aa2.56□□□□□ -2
VPS35-203ENST00000562420 TRAV13-1A0A0B4J241 112 aa2.56□□□□□ -2
VPS35-203ENST00000562420 TRBV5-4A0A0C4DH59 114 aa2.56□□□□□ -2
VPS35-203ENST00000562420 C17orf51A8MQB3 221 aa2.56□□□□□ -2
VPS35-203ENST00000562420 H7C1H1 209 aa2.56□□□□□ -2
VPS35-203ENST00000562420 C1orf105O95561 183 aa2.56□□□□□ -2
VPS35-203ENST00000562420 CT62P0C5K7 136 aa2.56□□□□□ -2
VPS35-203ENST00000562420 CXCL8P10145 99 aa2.56□□□□□ -2
VPS35-203ENST00000562420 COL8A2P25067 703 aa2.56□□□□□ -2
VPS35-203ENST00000562420 NMUP48645 174 aa2.56□□□□□ -2
VPS35-203ENST00000562420 FOXA3P55318 350 aaPredicted RBP2.56□□□□□ -2
VPS35-203ENST00000562420 ATP5EP56381 51 aaPredicted RBP2.56□□□□□ -2
VPS35-203ENST00000562420 SUPT4H1P63272 117 aaKnown RBP2.56□□□□□ -2
VPS35-203ENST00000562420 DIAPH2-AS1Q14236 149 aa2.56□□□□□ -2
VPS35-203ENST00000562420 INSL4Q14641 139 aa2.56□□□□□ -2
VPS35-203ENST00000562420 LAGE3Q14657 143 aa2.56□□□□□ -2
VPS35-203ENST00000562420 FAM78AQ5JUQ0 283 aa2.56□□□□□ -2
VPS35-203ENST00000562420 TMEM170BQ5T4T1 132 aa2.56□□□□□ -2
VPS35-203ENST00000562420 Q6ZSR3 168 aa2.56□□□□□ -2
VPS35-203ENST00000562420 C6orf201Q7Z4U5 140 aa2.56□□□□□ -2
VPS35-203ENST00000562420 AMN1Q8IY45 258 aa2.56□□□□□ -2
VPS35-203ENST00000562420 OR5AS1Q8N127 324 aa2.56□□□□□ -2
VPS35-203ENST00000562420 DRAM1Q8N682 238 aa2.56□□□□□ -2
VPS35-203ENST00000562420 TMEM252Q8N6L7 170 aa2.56□□□□□ -2
VPS35-203ENST00000562420 ZPLD1Q8TCW7 415 aa2.56□□□□□ -2
VPS35-203ENST00000562420 TMEM158Q8WZ71 300 aa2.56□□□□□ -2
VPS35-203ENST00000562420 EEF1AKMT3Q96AZ1 226 aa2.56□□□□□ -2
VPS35-203ENST00000562420 CLDN23Q96B33 292 aa2.56□□□□□ -2
VPS35-203ENST00000562420 FAM103A1Q9BTL3 118 aaKnown RBP2.56□□□□□ -2
VPS35-203ENST00000562420 SRXN1Q9BYN0 137 aa2.56□□□□□ -2
VPS35-203ENST00000562420 AGPAT4-IT1Q9H0P7 198 aa2.56□□□□□ -2
VPS35-203ENST00000562420 C11orf1Q9H5F2 150 aa2.56□□□□□ -2
VPS35-203ENST00000562420 FAM60AQ9NP50 221 aa2.56□□□□□ -2
VPS35-203ENST00000562420 WRAP73Q9P2S5 460 aaPredicted RBP2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms