RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 MGAT4CQ9UBM8 478 aa13.43□□□□□ -0.26
VPS35-202ENST00000561713 H3BTX0 84 aa13.42□□□□□ -0.26
VPS35-202ENST00000561713 CXCL3P19876 107 aa13.42□□□□□ -0.26
VPS35-202ENST00000561713 PLP1P60201 277 aa13.42□□□□□ -0.26
VPS35-202ENST00000561713 ARV1Q9H2C2 271 aa13.42□□□□□ -0.26
VPS35-202ENST00000561713 A0A087X0K7 114 aa13.41□□□□□ -0.26
VPS35-202ENST00000561713 MBPP02686 304 aaPredicted RBP13.41□□□□□ -0.26
VPS35-202ENST00000561713 S100A7P31151 101 aa13.41□□□□□ -0.26
VPS35-202ENST00000561713 SELENOTP62341 195 aa13.41□□□□□ -0.26
VPS35-202ENST00000561713 RHOBP62745 196 aa13.41□□□□□ -0.26
VPS35-202ENST00000561713 OR10P1Q8NGE3 313 aa13.41□□□□□ -0.26
VPS35-202ENST00000561713 OR8A1Q8NGG7 326 aa13.41□□□□□ -0.26
VPS35-202ENST00000561713 CENPXA8MT69 81 aa13.4□□□□□ -0.26
VPS35-202ENST00000561713 MRPS12O15235 138 aaKnown RBP13.4□□□□□ -0.26
VPS35-202ENST00000561713 TSC22D2O75157 780 aa13.4□□□□□ -0.26
VPS35-202ENST00000561713 DEFB130BP0DP73 79 aa13.4□□□□□ -0.26
VPS35-202ENST00000561713 DEFB130AP0DP74 79 aa13.4□□□□□ -0.26
VPS35-202ENST00000561713 AZU1P20160 251 aa13.4□□□□□ -0.26
VPS35-202ENST00000561713 OXA1LQ15070 435 aa13.4□□□□□ -0.26
VPS35-202ENST00000561713 FCN2Q15485 313 aa13.4□□□□□ -0.26
VPS35-202ENST00000561713 MORN5Q5VZ52 161 aa13.4□□□□□ -0.26
VPS35-202ENST00000561713 TEPPQ6URK8 271 aa13.4□□□□□ -0.26
VPS35-202ENST00000561713 LRRC20Q8TCA0 184 aa13.4□□□□□ -0.26
VPS35-202ENST00000561713 MITD1Q8WV92 249 aa13.4□□□□□ -0.26
VPS35-202ENST00000561713 MGST2Q99735 147 aa13.4□□□□□ -0.26
VPS35-202ENST00000561713 SEC22CQ9BRL7 303 aa13.4□□□□□ -0.26
VPS35-202ENST00000561713 PARD6GQ9BYG4 376 aaPredicted RBP13.4□□□□□ -0.26
VPS35-202ENST00000561713 TRAV6A0A075B6T7 132 aa13.39□□□□□ -0.27
VPS35-202ENST00000561713 PLAC8L1A1L4L8 177 aa13.39□□□□□ -0.27
VPS35-202ENST00000561713 C7orf66A4D0T2 115 aa13.39□□□□□ -0.27
VPS35-202ENST00000561713 FAM25EA8MYX2 175 aa13.39□□□□□ -0.27
VPS35-202ENST00000561713 SLC17A3O00476 420 aa13.39□□□□□ -0.27
VPS35-202ENST00000561713 AGPAT2O15120 278 aa13.39□□□□□ -0.27
VPS35-202ENST00000561713 PLA2G10O15496 165 aa13.39□□□□□ -0.27
VPS35-202ENST00000561713 PSG3Q16557 428 aa13.39□□□□□ -0.27
VPS35-202ENST00000561713 SOHLH1Q5JUK2 328 aa13.39□□□□□ -0.27
VPS35-202ENST00000561713 ZNF546Q86UE3 836 aa13.39□□□□□ -0.27
VPS35-202ENST00000561713 RPUSD4Q96CM3 377 aaKnown RBP13.39□□□□□ -0.27
VPS35-202ENST00000561713 FAM210BQ96KR6 192 aa13.39□□□□□ -0.27
VPS35-202ENST00000561713 NPVFQ9HCQ7 196 aa13.39□□□□□ -0.27
VPS35-202ENST00000561713 LSM5Q9Y4Y9 91 aaKnown RBP13.39□□□□□ -0.27
VPS35-202ENST00000561713 FNDC10F2Z333 226 aa13.38□□□□□ -0.27
VPS35-202ENST00000561713 K7EPK0 472 aa13.38□□□□□ -0.27
VPS35-202ENST00000561713 GOSR2O14653 212 aa13.38□□□□□ -0.27
VPS35-202ENST00000561713 HTN1P15515 57 aa13.38□□□□□ -0.27
VPS35-202ENST00000561713 KIR3DS1Q14943 382 aa13.38□□□□□ -0.27
VPS35-202ENST00000561713 C1orf134Q5TEV5 83 aa13.38□□□□□ -0.27
VPS35-202ENST00000561713 LINC00305Q7Z4B0 112 aa13.38□□□□□ -0.27
VPS35-202ENST00000561713 LYRM1O43325 122 aa13.37□□□□□ -0.27
VPS35-202ENST00000561713 COX7A2P2O60397 106 aa13.37□□□□□ -0.27
VPS35-202ENST00000561713 TAS2R30P59541 319 aa13.37□□□□□ -0.27
VPS35-202ENST00000561713 RNF212Q495C1 297 aa13.37□□□□□ -0.27
VPS35-202ENST00000561713 LINC01587Q99440 93 aa13.37□□□□□ -0.27
VPS35-202ENST00000561713 PPP1R14DQ9NXH3 145 aa13.37□□□□□ -0.27
VPS35-202ENST00000561713 PRAC2D3DTV9 90 aa13.36□□□□□ -0.27
VPS35-202ENST00000561713 L7N2F9 121 aa13.36□□□□□ -0.27
VPS35-202ENST00000561713 CST7O76096 145 aa13.36□□□□□ -0.27
VPS35-202ENST00000561713 VAMP2P63027 116 aa13.36□□□□□ -0.27
VPS35-202ENST00000561713 OPCMLQ14982 345 aa13.36□□□□□ -0.27
VPS35-202ENST00000561713 NUDT15Q9NV35 164 aa13.36□□□□□ -0.27
VPS35-202ENST00000561713 LYRM9A8MSI8 78 aa13.35□□□□□ -0.27
VPS35-202ENST00000561713 BCAP31P51572 246 aa13.35□□□□□ -0.27
VPS35-202ENST00000561713 CAV2P51636 162 aa13.35□□□□□ -0.27
VPS35-202ENST00000561713 ZNF846Q147U1 533 aa13.35□□□□□ -0.27
VPS35-202ENST00000561713 LCN15Q6UWW0 184 aa13.35□□□□□ -0.27
VPS35-202ENST00000561713 TMEM37Q8WXS4 190 aa13.35□□□□□ -0.27
VPS35-202ENST00000561713 ZNF331Q9NQX6 463 aaPredicted RBP13.35□□□□□ -0.27
VPS35-202ENST00000561713 APOBP04114 4563 aaKnown RBP13.35□□□□□ -0.27
VPS35-202ENST00000561713 FAM24AA6NFZ4 105 aa13.34□□□□□ -0.27
VPS35-202ENST00000561713 F5H768 121 aa13.34□□□□□ -0.27
VPS35-202ENST00000561713 MIC13Q5XKP0 118 aa13.34□□□□□ -0.27
VPS35-202ENST00000561713 DNAH5Q8TE73 4624 aa13.33□□□□□ -0.28
VPS35-202ENST00000561713 TRAV5A0A0B4J249 113 aa13.33□□□□□ -0.28
VPS35-202ENST00000561713 UBE2L5PA0A1B0GUS4 154 aa13.33□□□□□ -0.28
VPS35-202ENST00000561713 C5orf51A6NDU8 294 aa13.33□□□□□ -0.28
VPS35-202ENST00000561713 J3KRW8 73 aa13.33□□□□□ -0.28
VPS35-202ENST00000561713 TCRBP04435 133 aa13.33□□□□□ -0.28
VPS35-202ENST00000561713 TSPOP30536 169 aa13.33□□□□□ -0.28
VPS35-202ENST00000561713 S100A10P60903 97 aa13.33□□□□□ -0.28
VPS35-202ENST00000561713 C10orf113Q5VZT2 155 aa13.33□□□□□ -0.28
VPS35-202ENST00000561713 C11orf1Q9H5F2 150 aa13.33□□□□□ -0.28
VPS35-202ENST00000561713 C16orf90A8MZG2 172 aa13.32□□□□□ -0.28
VPS35-202ENST00000561713 H3BQ15 152 aa13.32□□□□□ -0.28
VPS35-202ENST00000561713 NUDT3O95989 172 aa13.32□□□□□ -0.28
VPS35-202ENST00000561713 CXCL2P19875 107 aa13.32□□□□□ -0.28
VPS35-202ENST00000561713 CDKN1BP46527 198 aa13.32□□□□□ -0.28
VPS35-202ENST00000561713 CAMLGP49069 296 aa13.32□□□□□ -0.28
VPS35-202ENST00000561713 TAS2R60P59551 318 aa13.32□□□□□ -0.28
VPS35-202ENST00000561713 TNP2Q05952 138 aa13.32□□□□□ -0.28
VPS35-202ENST00000561713 PXDC1Q5TGL8 231 aa13.32□□□□□ -0.28
VPS35-202ENST00000561713 NRARPQ7Z6K4 114 aa13.32□□□□□ -0.28
VPS35-202ENST00000561713 S100A7AQ86SG5 101 aa13.32□□□□□ -0.28
VPS35-202ENST00000561713 BPIFA4PQ86YQ2 179 aa13.32□□□□□ -0.28
VPS35-202ENST00000561713 MAPKAPK5-AS1Q8N8E1 139 aa13.32□□□□□ -0.28
VPS35-202ENST00000561713 ZNF431Q8TF32 576 aaPredicted RBP13.32□□□□□ -0.28
VPS35-202ENST00000561713 SLC50A1Q9BRV3 221 aa13.32□□□□□ -0.28
VPS35-202ENST00000561713 GGACTQ9BVM4 153 aa13.32□□□□□ -0.28
VPS35-202ENST00000561713 CDK2AP2O75956 126 aa13.31□□□□□ -0.28
VPS35-202ENST00000561713 IGLC2P0DOY2 106 aa13.31□□□□□ -0.28
VPS35-202ENST00000561713 B2MP61769 119 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms