RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 TRPT1Q86TN4 253 aaKnown RBP10.73□□□□□ -0.69
CSPG4P11-201ENST00000560634 MBD3L2Q8NHZ7 208 aaPredicted RBP10.73□□□□□ -0.69
CSPG4P11-201ENST00000560634 IGHV3-73A0A0B4J1V6 119 aa10.73□□□□□ -0.69
CSPG4P11-201ENST00000560634 MESP1Q9BRJ9 268 aa10.73□□□□□ -0.69
CSPG4P11-201ENST00000560634 PARP14Q460N5 1801 aa10.73□□□□□ -0.69
CSPG4P11-201ENST00000560634 HEATR1Q9H583 2144 aaKnown RBP10.73□□□□□ -0.69
CSPG4P11-201ENST00000560634 NDUFB8O95169 186 aa10.73□□□□□ -0.69
CSPG4P11-201ENST00000560634 ARMS2P0C7Q2 107 aa10.73□□□□□ -0.69
CSPG4P11-201ENST00000560634 C11orf44Q8N8P7 122 aa10.73□□□□□ -0.69
CSPG4P11-201ENST00000560634 DAZ1Q9NQZ3 744 aaKnown RBP10.73□□□□□ -0.69
CSPG4P11-201ENST00000560634 ARFGEF3Q5TH69 2177 aa10.73□□□□□ -0.69
CSPG4P11-201ENST00000560634 IGKV1D-17A0A075B6S4 117 aa10.73□□□□□ -0.69
CSPG4P11-201ENST00000560634 A8MWP6 167 aa10.73□□□□□ -0.69
CSPG4P11-201ENST00000560634 CFPP27918 469 aa10.73□□□□□ -0.69
CSPG4P11-201ENST00000560634 NSUN5P1Q3KNT7 163 aa10.73□□□□□ -0.69
CSPG4P11-201ENST00000560634 RNF166Q96A37 237 aaPredicted RBP10.73□□□□□ -0.69
CSPG4P11-201ENST00000560634 RGPD3A6NKT7 1758 aaPredicted RBP10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 C9JAW5 83 aa10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 INS-IGF2F8WCM5 200 aa10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 FXYD7P58549 80 aa10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 NDPQ00604 133 aa10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 KLRD1Q13241 179 aa10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 Q6ZRM9 215 aa10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 COL11A1P12107 1806 aaPredicted RBP10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 ADAMTSL5Q6ZMM2 481 aa10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 CRIPAKQ8N1N5 446 aa10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 NCOR1O75376 2440 aa10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 GREB1LQ9C091 1923 aaPredicted RBP10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 TRAV13-1A0A0B4J241 112 aa10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 A0A0G2JRQ6 117 aa10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 NDUFS6O75380 124 aaKnown RBP10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 PFN1P07737 140 aaKnown RBP10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 MDS2Q8NDY4 140 aa10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 SPXQ9BT56 116 aa10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 EDA2RQ9HAV5 297 aa10.72□□□□□ -0.69
CSPG4P11-201ENST00000560634 MED12Q93074 2177 aa10.71□□□□□ -0.69
CSPG4P11-201ENST00000560634 YPEL3P61236 119 aaPredicted RBP10.71□□□□□ -0.69
CSPG4P11-201ENST00000560634 MPDZO75970 2070 aa10.71□□□□□ -0.7
CSPG4P11-201ENST00000560634 TMEM141Q96I45 108 aa10.71□□□□□ -0.7
CSPG4P11-201ENST00000560634 TMEM75Q8N9X5 138 aa10.7□□□□□ -0.7
CSPG4P11-201ENST00000560634 C5orf63A6NC05 138 aa10.7□□□□□ -0.7
CSPG4P11-201ENST00000560634 IGHG3P01860 377 aa10.7□□□□□ -0.7
CSPG4P11-201ENST00000560634 SMKR1H3BMG3 65 aa10.7□□□□□ -0.7
CSPG4P11-201ENST00000560634 CLPSP04118 112 aa10.7□□□□□ -0.7
CSPG4P11-201ENST00000560634 ADCYAP1P18509 176 aa10.7□□□□□ -0.7
CSPG4P11-201ENST00000560634 UBE2DNLQ8IWF7 75 aa10.7□□□□□ -0.7
CSPG4P11-201ENST00000560634 GAGE2AQ6NT46 116 aa10.7□□□□□ -0.7
CSPG4P11-201ENST00000560634 C18orf32Q8TCD1 76 aa10.7□□□□□ -0.7
CSPG4P11-201ENST00000560634 PRSS46E5RG02 174 aa10.69□□□□□ -0.7
CSPG4P11-201ENST00000560634 IGHV3-53P01767 116 aa10.69□□□□□ -0.7
CSPG4P11-201ENST00000560634 FAM104BQ5XKR9 115 aa10.69□□□□□ -0.7
CSPG4P11-201ENST00000560634 ZNF236Q9UL36 1845 aa10.69□□□□□ -0.7
CSPG4P11-201ENST00000560634 IL17RELQ6ZVW7 336 aa10.69□□□□□ -0.7
CSPG4P11-201ENST00000560634 NCOR1P1Q9H4R4 102 aa10.69□□□□□ -0.7
CSPG4P11-201ENST00000560634 SOCS3O14543 225 aa10.69□□□□□ -0.7
CSPG4P11-201ENST00000560634 NBASA2RRP1 2371 aa10.69□□□□□ -0.7
CSPG4P11-201ENST00000560634 A0A087WWL8 130 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 H3BMM0 161 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 SLC25A16P16260 332 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 B3GALT5-AS1P59052 145 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 MST1LQ2TV78 715 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 PI4KAP42356 2102 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 TET1Q8NFU7 2136 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 PKDREJQ9NTG1 2253 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 A0A1W2PPI3 338 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 PRB4P10163 310 aaPredicted RBP10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 C2orf66Q6UXQ4 117 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 STPG4Q8N801 248 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 Q8N8P6 123 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 RNF144BQ7Z419 303 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 EREGO14944 169 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 IGKV1-16P04430 117 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 LMO1P25800 156 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 SLAQ13239 276 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 BRD3OSQ6XYD6 125 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 FAM231DQ6ZW35 169 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 ZNF625Q96I27 306 aaPredicted RBP10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 LINC00479Q96M42 142 aa10.68□□□□□ -0.7
CSPG4P11-201ENST00000560634 COL6A6A6NMZ7 2263 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 OVOL3O00110 214 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 MLANAQ16655 118 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 MAJINQ3KP22 176 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 PRR31Q5SQ13 230 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 MYO7BQ6PIF6 2116 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 FAM110DQ8TAY7 271 aaPredicted RBP10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 POLR3KQ9Y2Y1 108 aaPredicted RBP10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 KIAA2026Q5HYC2 2103 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 PMVKQ15126 192 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 IGFL4Q6B9Z1 124 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 Q6ZS92 163 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 LCNL1Q6ZST4 164 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 TMEM14BQ9NUH8 114 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 A0A0G2JNJ9 132 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 RPL35AP18077 110 aaKnown RBP10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 Q0VFX4 171 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 C5orf24Q7Z6I8 188 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 KLHL30-AS1Q8NEE0 82 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 UBE2E2Q96LR5 201 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 Q9UFV3 132 aa10.67□□□□□ -0.7
CSPG4P11-201ENST00000560634 RNF114Q9Y508 228 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms