RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 TMEM167AQ8TBQ9 72 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 GRAMD2BQ96HH9 432 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 TMEM70Q9BUB7 260 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 YAE1D1Q9NRH1 226 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 C2orf70A6NJV1 201 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 ATP5IP56385 69 aaPredicted RBP9.06□□□□□ -0.96
CUX1-218ENST00000560541 ADIPOQQ15848 244 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 ANAPC13Q9BS18 74 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 TNFRSF19Q9NS68 423 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 TNFRSF18Q9Y5U5 241 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 ZNF292O60281 2723 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 C17orf100A8MU93 164 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 J3QR89 54 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 FSTL3O95633 263 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 IGLV2-23P01705 113 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 FABP2P12104 132 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 TNFRSF1AP19438 455 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 CNTFRP26992 372 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 ZNF137PP52743 207 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 GAGE5Q13069 117 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 GAGE6Q13070 117 aa9.06□□□□□ -0.96
CUX1-218ENST00000560541 MALRD1Q5VYJ5 2156 aa9.05□□□□□ -0.96
CUX1-218ENST00000560541 A0A1W2PPM0 123 aa9.05□□□□□ -0.96
CUX1-218ENST00000560541 IGF2-ASQ6U949 168 aa9.05□□□□□ -0.96
CUX1-218ENST00000560541 PET117Q6UWS5 81 aa9.05□□□□□ -0.96
CUX1-218ENST00000560541 Q71RC1 249 aaPredicted RBP9.05□□□□□ -0.96
CUX1-218ENST00000560541 PIP4P1Q86T03 277 aa9.05□□□□□ -0.96
CUX1-218ENST00000560541 ARPC1AQ92747 370 aa9.05□□□□□ -0.96
CUX1-218ENST00000560541 C20orf78Q9BR46 151 aa9.05□□□□□ -0.96
CUX1-218ENST00000560541 EPDR1Q9UM22 224 aa9.05□□□□□ -0.96
CUX1-218ENST00000560541 H3BRM9 83 aa9.05□□□□□ -0.96
CUX1-218ENST00000560541 SUB1P53999 127 aaKnown RBP eCLIP9.05□□□□□ -0.96
CUX1-218ENST00000560541 BSPH1Q075Z2 132 aa9.05□□□□□ -0.96
CUX1-218ENST00000560541 OR5A1Q8NGJ0 315 aa9.05□□□□□ -0.96
CUX1-218ENST00000560541 ASCL2Q99929 193 aa9.05□□□□□ -0.96
CUX1-218ENST00000560541 TRAV8-1A0A0A6YYK1 113 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 MT-ATP8P03928 68 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 PGLYRP4Q96LB8 373 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 NDFIP1Q9BT67 221 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 CTSZQ9UBR2 303 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 HSPB8Q9UJY1 196 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 ABCA4P78363 2273 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 FAM231DQ6ZW35 169 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 FA2HQ7L5A8 372 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 C7orf69Q9H7B7 122 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 NBASA2RRP1 2371 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 A6NDN8 102 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 NDUFB3O43676 98 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 FCGR2BP31994 310 aaPredicted RBP9.04□□□□□ -0.96
CUX1-218ENST00000560541 SEC11AP67812 179 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 TMEM30BQ3MIR4 351 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 C2orf91Q6ZV80 131 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 WIPF2Q8TF74 440 aaPredicted RBP9.04□□□□□ -0.96
CUX1-218ENST00000560541 DPF1Q92782 380 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 SCRT2Q9NQ03 307 aa9.04□□□□□ -0.96
CUX1-218ENST00000560541 SPTA1P02549 2419 aa9.03□□□□□ -0.96
CUX1-218ENST00000560541 DCHS2Q6V1P9 2916 aa9.03□□□□□ -0.96
CUX1-218ENST00000560541 CEACAM4O75871 244 aa9.03□□□□□ -0.96
CUX1-218ENST00000560541 PPIFP30405 207 aaKnown RBP9.03□□□□□ -0.96
CUX1-218ENST00000560541 ZNF418Q8TF45 676 aaPredicted RBP9.03□□□□□ -0.96
CUX1-218ENST00000560541 GTSF1Q8WW33 167 aa9.03□□□□□ -0.96
CUX1-218ENST00000560541 SPATA25Q9BR10 227 aa9.03□□□□□ -0.96
CUX1-218ENST00000560541 FAM90A27PA6NNH2 459 aa9.03□□□□□ -0.96
CUX1-218ENST00000560541 TMEM178BH3BS89 294 aa9.03□□□□□ -0.96
CUX1-218ENST00000560541 M0QXV9 152 aa9.03□□□□□ -0.96
CUX1-218ENST00000560541 MYCNOSP40205 109 aa9.03□□□□□ -0.96
CUX1-218ENST00000560541 VMA21Q3ZAQ7 101 aa9.03□□□□□ -0.96
CUX1-218ENST00000560541 THAP8Q8NA92 274 aa9.03□□□□□ -0.96
CUX1-218ENST00000560541 URB1-AS1Q96HZ7 61 aa9.03□□□□□ -0.96
CUX1-218ENST00000560541 CEP295Q9C0D2 2601 aa9.02□□□□□ -0.96
CUX1-218ENST00000560541 PTPRZ1P23471 2315 aaPredicted RBP9.02□□□□□ -0.96
CUX1-218ENST00000560541 NPIPB5A8MRT5 1133 aa9.02□□□□□ -0.96
CUX1-218ENST00000560541 CHEK1O14757 476 aa9.02□□□□□ -0.96
CUX1-218ENST00000560541 MRGPRG-AS1Q2M3A8 158 aa9.02□□□□□ -0.96
CUX1-218ENST00000560541 C8orf86Q6ZUL3 223 aa9.02□□□□□ -0.96
CUX1-218ENST00000560541 GPR82Q96P67 336 aa9.02□□□□□ -0.96
CUX1-218ENST00000560541 C1QTNF4Q9BXJ3 329 aa9.02□□□□□ -0.96
CUX1-218ENST00000560541 SPANXB1Q9NS25 103 aaPredicted RBP9.02□□□□□ -0.96
CUX1-218ENST00000560541 ZNF138P52744 262 aa9.02□□□□□ -0.97
CUX1-218ENST00000560541 C3orf36Q3SXR2 165 aa9.02□□□□□ -0.97
CUX1-218ENST00000560541 SAMD5Q5TGI4 173 aa9.02□□□□□ -0.97
CUX1-218ENST00000560541 Q6ZS92 163 aa9.02□□□□□ -0.97
CUX1-218ENST00000560541 RPP21Q9H633 154 aaKnown RBP9.02□□□□□ -0.97
CUX1-218ENST00000560541 ERG28Q9UKR5 140 aa9.02□□□□□ -0.97
CUX1-218ENST00000560541 A0A0G2JNJ9 132 aa9.02□□□□□ -0.97
CUX1-218ENST00000560541 C16orf97H3BN30 126 aa9.02□□□□□ -0.97
CUX1-218ENST00000560541 P01737 135 aa9.02□□□□□ -0.97
CUX1-218ENST00000560541 LOXP28300 417 aaPredicted RBP9.02□□□□□ -0.97
CUX1-218ENST00000560541 LYZP61626 148 aa9.02□□□□□ -0.97
CUX1-218ENST00000560541 NUP37Q8NFH4 326 aa9.02□□□□□ -0.97
CUX1-218ENST00000560541 Q9H3A6 140 aa9.02□□□□□ -0.97
CUX1-218ENST00000560541 Q9UFV3 132 aa9.02□□□□□ -0.97
CUX1-218ENST00000560541 TLN1Q9Y490 2541 aaKnown RBP9.01□□□□□ -0.97
CUX1-218ENST00000560541 SYS1-DBNDD2H3BUS1 97 aa9.01□□□□□ -0.97
CUX1-218ENST00000560541 K7EMI3 77 aa9.01□□□□□ -0.97
CUX1-218ENST00000560541 HBBP68871 147 aa9.01□□□□□ -0.97
CUX1-218ENST00000560541 RASL11AQ6T310 242 aa9.01□□□□□ -0.97
CUX1-218ENST00000560541 EXOC3-AS1Q8N2X6 119 aa9.01□□□□□ -0.97
CUX1-218ENST00000560541 CIARTQ8N365 385 aaPredicted RBP9.01□□□□□ -0.97
CUX1-218ENST00000560541 TMEM191AQ9H0A3 160 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms