RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 SPANXN2Q5MJ10 180 aa12.33□□□□□ -0.44
TSPAN3-208ENST00000560514 TMEM144Q7Z5S9 345 aa12.33□□□□□ -0.44
TSPAN3-208ENST00000560514 OR4D5Q8NGN0 318 aa12.33□□□□□ -0.44
TSPAN3-208ENST00000560514 NOP10Q9NPE3 64 aaKnown RBP12.33□□□□□ -0.44
TSPAN3-208ENST00000560514 MRPS16Q9Y3D3 137 aaKnown RBP12.33□□□□□ -0.44
TSPAN3-208ENST00000560514 BOLA2-SMG1P6H3BVE0 249 aa12.32□□□□□ -0.44
TSPAN3-208ENST00000560514 IAPPP10997 89 aa12.32□□□□□ -0.44
TSPAN3-208ENST00000560514 RHOBP62745 196 aa12.32□□□□□ -0.44
TSPAN3-208ENST00000560514 ESRGQ1W209 222 aa12.32□□□□□ -0.44
TSPAN3-208ENST00000560514 FAT1Q14517 4588 aa12.31□□□□□ -0.44
TSPAN3-208ENST00000560514 IGKV1OR2-108A0A075B7D4 117 aa12.31□□□□□ -0.44
TSPAN3-208ENST00000560514 CCDC160A6NGH7 325 aa12.31□□□□□ -0.44
TSPAN3-208ENST00000560514 PRSS46E5RG02 174 aa12.31□□□□□ -0.44
TSPAN3-208ENST00000560514 FAM229AH3BQW9 127 aa12.31□□□□□ -0.44
TSPAN3-208ENST00000560514 FUSP35637 526 aaKnown RBP eCLIP12.31□□□□□ -0.44
TSPAN3-208ENST00000560514 FGL1Q08830 312 aa12.31□□□□□ -0.44
TSPAN3-208ENST00000560514 ZNF493Q6ZR52 646 aa12.31□□□□□ -0.44
TSPAN3-208ENST00000560514 ZNF738Q8NE65 137 aa12.31□□□□□ -0.44
TSPAN3-208ENST00000560514 SLC25A39Q9BZJ4 359 aaPredicted RBP12.31□□□□□ -0.44
TSPAN3-208ENST00000560514 SLC25A32Q9H2D1 315 aa12.31□□□□□ -0.44
TSPAN3-208ENST00000560514 STRAPQ9Y3F4 350 aaKnown RBP12.31□□□□□ -0.44
TSPAN3-208ENST00000560514 MYCBP2O75592 4640 aa12.31□□□□□ -0.44
TSPAN3-208ENST00000560514 WRBO00258 174 aa12.3□□□□□ -0.44
TSPAN3-208ENST00000560514 HOXB5P09067 269 aa12.3□□□□□ -0.44
TSPAN3-208ENST00000560514 BPIFCQ8NFQ6 507 aa12.3□□□□□ -0.44
TSPAN3-208ENST00000560514 OR1B1Q8NGR6 318 aa12.3□□□□□ -0.44
TSPAN3-208ENST00000560514 GPR82Q96P67 336 aa12.3□□□□□ -0.44
TSPAN3-208ENST00000560514 SRRQ9GZT4 340 aa12.3□□□□□ -0.44
TSPAN3-208ENST00000560514 RBM38Q9H0Z9 239 aaKnown RBP12.3□□□□□ -0.44
TSPAN3-208ENST00000560514 PAIP2BQ9ULR5 123 aaKnown RBP12.3□□□□□ -0.44
TSPAN3-208ENST00000560514 C9orf170A2RU37 121 aa12.29□□□□□ -0.44
TSPAN3-208ENST00000560514 NDUFB6O95139 128 aa12.29□□□□□ -0.44
TSPAN3-208ENST00000560514 CNPY1Q3B7I2 92 aa12.29□□□□□ -0.44
TSPAN3-208ENST00000560514 SPANXN5Q5MJ07 72 aa12.29□□□□□ -0.44
TSPAN3-208ENST00000560514 IGFL4Q6B9Z1 124 aa12.29□□□□□ -0.44
TSPAN3-208ENST00000560514 TMEM263Q8WUH6 116 aaKnown RBP12.29□□□□□ -0.44
TSPAN3-208ENST00000560514 MDFICQ9P1T7 246 aa12.29□□□□□ -0.44
TSPAN3-208ENST00000560514 ZNF98A6NK75 572 aa12.28□□□□□ -0.44
TSPAN3-208ENST00000560514 SMR3BP02814 79 aaPredicted RBP12.28□□□□□ -0.44
TSPAN3-208ENST00000560514 INPP1P49441 399 aa12.28□□□□□ -0.44
TSPAN3-208ENST00000560514 HIST1H1AQ02539 215 aaPredicted RBP12.28□□□□□ -0.44
TSPAN3-208ENST00000560514 ICAM4Q14773 271 aa12.28□□□□□ -0.44
TSPAN3-208ENST00000560514 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.28□□□□□ -0.44
TSPAN3-208ENST00000560514 RNF182Q8N6D2 247 aa12.28□□□□□ -0.44
TSPAN3-208ENST00000560514 C17orf77Q96MU5 243 aa12.28□□□□□ -0.44
TSPAN3-208ENST00000560514 H3BNG1 76 aa12.27□□□□□ -0.45
TSPAN3-208ENST00000560514 Q6ZRN7 208 aaPredicted RBP12.27□□□□□ -0.45
TSPAN3-208ENST00000560514 S100A7AQ86SG5 101 aa12.27□□□□□ -0.45
TSPAN3-208ENST00000560514 CCDC28AQ8IWP9 274 aa12.27□□□□□ -0.45
TSPAN3-208ENST00000560514 SMIM8Q96KF7 97 aa12.27□□□□□ -0.45
TSPAN3-208ENST00000560514 CENPXA8MT69 81 aa12.26□□□□□ -0.45
TSPAN3-208ENST00000560514 SIVA1O15304 175 aa12.26□□□□□ -0.45
TSPAN3-208ENST00000560514 RLN2P04090 185 aa12.26□□□□□ -0.45
TSPAN3-208ENST00000560514 ORM2P19652 201 aa12.26□□□□□ -0.45
TSPAN3-208ENST00000560514 BAK1Q16611 211 aa12.26□□□□□ -0.45
TSPAN3-208ENST00000560514 TRIQKQ629K1 86 aa12.26□□□□□ -0.45
TSPAN3-208ENST00000560514 Q6ZSN1 163 aa12.26□□□□□ -0.45
TSPAN3-208ENST00000560514 RNASE8Q8TDE3 154 aaKnown RBP12.26□□□□□ -0.45
TSPAN3-208ENST00000560514 TMEM147Q9BVK8 224 aa12.26□□□□□ -0.45
TSPAN3-208ENST00000560514 GAGE12BA1L429 117 aa12.25□□□□□ -0.45
TSPAN3-208ENST00000560514 FNDC10F2Z333 226 aa12.25□□□□□ -0.45
TSPAN3-208ENST00000560514 GAGE7O76087 117 aa12.25□□□□□ -0.45
TSPAN3-208ENST00000560514 OR4E1P0C645 316 aa12.25□□□□□ -0.45
TSPAN3-208ENST00000560514 GAGE12FP0CL80 117 aa12.25□□□□□ -0.45
TSPAN3-208ENST00000560514 GAGE12GP0CL81 117 aa12.25□□□□□ -0.45
TSPAN3-208ENST00000560514 GAGE12IP0CL82 117 aa12.25□□□□□ -0.45
TSPAN3-208ENST00000560514 PLP1P60201 277 aa12.25□□□□□ -0.45
TSPAN3-208ENST00000560514 SELENOTP62341 195 aa12.25□□□□□ -0.45
TSPAN3-208ENST00000560514 OR8A1Q8NGG7 326 aa12.25□□□□□ -0.45
TSPAN3-208ENST00000560514 PSENENQ9NZ42 101 aa12.25□□□□□ -0.45
TSPAN3-208ENST00000560514 RNF24Q9Y225 148 aa12.25□□□□□ -0.45
TSPAN3-208ENST00000560514 TRAV8-2A0A0B4J237 113 aa12.24□□□□□ -0.45
TSPAN3-208ENST00000560514 SNURFLB1AK76 121 aa12.24□□□□□ -0.45
TSPAN3-208ENST00000560514 H7BYZ3 331 aa12.24□□□□□ -0.45
TSPAN3-208ENST00000560514 HOXA5P20719 270 aa12.24□□□□□ -0.45
TSPAN3-208ENST00000560514 CDKN1BP46527 198 aa12.24□□□□□ -0.45
TSPAN3-208ENST00000560514 TAS2R30P59541 319 aa12.24□□□□□ -0.45
TSPAN3-208ENST00000560514 KRTAP10-1P60331 282 aa12.24□□□□□ -0.45
TSPAN3-208ENST00000560514 POLR2GP62487 172 aaKnown RBP eCLIP12.24□□□□□ -0.45
TSPAN3-208ENST00000560514 AKR1C1Q04828 323 aa12.24□□□□□ -0.45
TSPAN3-208ENST00000560514 TMEM182Q6ZP80 229 aaPredicted RBP12.24□□□□□ -0.45
TSPAN3-208ENST00000560514 NFE4Q86UQ8 179 aa12.24□□□□□ -0.45
TSPAN3-208ENST00000560514 NPVFQ9HCQ7 196 aa12.24□□□□□ -0.45
TSPAN3-208ENST00000560514 SRRM2Q9UQ35 2752 aaKnown RBP12.24□□□□□ -0.45
TSPAN3-208ENST00000560514 PMS2P5A8MQ11 134 aa12.23□□□□□ -0.45
TSPAN3-208ENST00000560514 IL5P05113 134 aa12.23□□□□□ -0.45
TSPAN3-208ENST00000560514 CYP2G1PQ6ZSU1 146 aa12.23□□□□□ -0.45
TSPAN3-208ENST00000560514 ACOT7LQ6ZUV0 252 aa12.23□□□□□ -0.45
TSPAN3-208ENST00000560514 LRRC20Q8TCA0 184 aa12.23□□□□□ -0.45
TSPAN3-208ENST00000560514 KRTAP3-3Q9BYR6 98 aa12.23□□□□□ -0.45
TSPAN3-208ENST00000560514 KRTAP3-2Q9BYR7 98 aa12.23□□□□□ -0.45
TSPAN3-208ENST00000560514 VPS13BQ7Z7G8 4022 aa12.22□□□□□ -0.45
TSPAN3-208ENST00000560514 K7EPK0 472 aa12.22□□□□□ -0.45
TSPAN3-208ENST00000560514 HYPMO75409 117 aa12.22□□□□□ -0.45
TSPAN3-208ENST00000560514 RPL7P18124 248 aaKnown RBP12.22□□□□□ -0.45
TSPAN3-208ENST00000560514 GATA2P23769 480 aaPredicted RBP12.22□□□□□ -0.45
TSPAN3-208ENST00000560514 RAP2BP61225 183 aa12.22□□□□□ -0.45
TSPAN3-208ENST00000560514 TMEM14EPQ6UXP3 125 aa12.22□□□□□ -0.45
TSPAN3-208ENST00000560514 LINC00612Q8N6U2 182 aa12.22□□□□□ -0.45
TSPAN3-208ENST00000560514 SHANK2-AS3Q9BTD1 123 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms