RNA–Protein interactions for RNA: ENST00000557358.1

VPS33B-206, Transcript of VPS33B, late endosome and lysosome associated, human

TSL 4

Gene VPS33B, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33B-206	ENST00000557358	FGF7	P21781	194 aa		10.11	□□□□□ -0.79
VPS33B-206	ENST00000557358	BPIFA4P	Q86YQ2	179 aa		10.11	□□□□□ -0.79
VPS33B-206	ENST00000557358	ZNF709	Q8N972	641 aa		10.11	□□□□□ -0.79
VPS33B-206	ENST00000557358	UHRF2	Q96PU4	802 aa		10.11	□□□□□ -0.79
VPS33B-206	ENST00000557358	MGST2	Q99735	147 aa		10.11	□□□□□ -0.79
VPS33B-206	ENST00000557358	C11orf68	Q9H3H3	251 aa	Known RBP	10.11	□□□□□ -0.79
VPS33B-206	ENST00000557358	WFDC1	Q9HC57	220 aa		10.11	□□□□□ -0.79
VPS33B-206	ENST00000557358	DNAJC4	Q9NNZ3	241 aa		10.11	□□□□□ -0.79
VPS33B-206	ENST00000557358	WDR83OS	Q9Y284	106 aa		10.11	□□□□□ -0.79
VPS33B-206	ENST00000557358	BORCS7-ASMT	A0A0B4J1R7	106 aa		10.1	□□□□□ -0.79
VPS33B-206	ENST00000557358	SOCS3	O14543	225 aa		10.1	□□□□□ -0.79
VPS33B-206	ENST00000557358	DUSP14	O95147	198 aa	Known RBP	10.1	□□□□□ -0.79
VPS33B-206	ENST00000557358	B2M	P61769	119 aa		10.1	□□□□□ -0.79
VPS33B-206	ENST00000557358	PMS2P11	Q13670	270 aa		10.1	□□□□□ -0.79
VPS33B-206	ENST00000557358	OPCML	Q14982	345 aa		10.1	□□□□□ -0.79
VPS33B-206	ENST00000557358	ZNF738	Q8NE65	137 aa		10.1	□□□□□ -0.79
VPS33B-206	ENST00000557358	ZNF471	Q9BX82	626 aa	Predicted RBP	10.1	□□□□□ -0.79
VPS33B-206	ENST00000557358	WDR61	Q9GZS3	305 aa	Known RBP	10.1	□□□□□ -0.79
VPS33B-206	ENST00000557358	CYTL1	Q9NRR1	136 aa		10.1	□□□□□ -0.79
VPS33B-206	ENST00000557358	PPP1R14D	Q9NXH3	145 aa		10.1	□□□□□ -0.79
VPS33B-206	ENST00000557358	KLK5	Q9Y337	293 aa	Predicted RBP	10.1	□□□□□ -0.79
VPS33B-206	ENST00000557358	IGKV3-20	P01619	116 aa		10.09	□□□□□ -0.79
VPS33B-206	ENST00000557358	RPL29	P47914	159 aa	Known RBP	10.09	□□□□□ -0.79
VPS33B-206	ENST00000557358	PSG9	Q00887	426 aa		10.09	□□□□□ -0.79
VPS33B-206	ENST00000557358	RPL7L1	Q6DKI1	246 aa	Known RBP	10.09	□□□□□ -0.79
VPS33B-206	ENST00000557358	LCN15	Q6UWW0	184 aa		10.09	□□□□□ -0.79
VPS33B-206	ENST00000557358	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		10.09	□□□□□ -0.79
VPS33B-206	ENST00000557358	C11orf45	Q8TAV5	145 aa		10.09	□□□□□ -0.79
VPS33B-206	ENST00000557358	CLUHP3	Q96NS8	147 aa		10.09	□□□□□ -0.79
VPS33B-206	ENST00000557358	SLC50A1	Q9BRV3	221 aa		10.09	□□□□□ -0.79
VPS33B-206	ENST00000557358	PARD6G	Q9BYG4	376 aa	Predicted RBP	10.09	□□□□□ -0.79
VPS33B-206	ENST00000557358	CLEC5A	Q9NY25	188 aa		10.09	□□□□□ -0.79
VPS33B-206	ENST00000557358	XCL2	Q9UBD3	114 aa		10.09	□□□□□ -0.79
VPS33B-206	ENST00000557358		A0A087X0K7	114 aa		10.08	□□□□□ -0.8
VPS33B-206	ENST00000557358	C17orf112	F2Z3M2	114 aa		10.08	□□□□□ -0.8
VPS33B-206	ENST00000557358	AMBP	P02760	352 aa		10.08	□□□□□ -0.8
VPS33B-206	ENST00000557358	EIF5A	P63241	154 aa	Known RBP	10.08	□□□□□ -0.8
VPS33B-206	ENST00000557358	MIC13	Q5XKP0	118 aa		10.08	□□□□□ -0.8
VPS33B-206	ENST00000557358	SCGB1C1	Q8TD33	95 aa		10.08	□□□□□ -0.8
VPS33B-206	ENST00000557358	SLC39A9	Q9NUM3	307 aa		10.08	□□□□□ -0.8
VPS33B-206	ENST00000557358	GOLT1B	Q9Y3E0	138 aa		10.08	□□□□□ -0.8
VPS33B-206	ENST00000557358	BOLA1	Q9Y3E2	137 aa		10.08	□□□□□ -0.8
VPS33B-206	ENST00000557358	PXMP4	Q9Y6I8	212 aa		10.08	□□□□□ -0.8
VPS33B-206	ENST00000557358	DNAH7	Q8WXX0	4024 aa		10.07	□□□□□ -0.8
VPS33B-206	ENST00000557358		A0A0J9YX75	114 aa		10.07	□□□□□ -0.8
VPS33B-206	ENST00000557358	TPT1	P13693	172 aa	Known RBP	10.07	□□□□□ -0.8
VPS33B-206	ENST00000557358	GUK1	Q16774	197 aa		10.07	□□□□□ -0.8
VPS33B-206	ENST00000557358	FAM78B	Q5VT40	261 aa		10.07	□□□□□ -0.8
VPS33B-206	ENST00000557358	PATE2	Q6UY27	113 aa		10.07	□□□□□ -0.8
VPS33B-206	ENST00000557358	SLC51B	Q86UW2	128 aa		10.07	□□□□□ -0.8
VPS33B-206	ENST00000557358	HSD17B11	Q8NBQ5	300 aa		10.07	□□□□□ -0.8
VPS33B-206	ENST00000557358	SMIM9	A6NGZ8	99 aa		10.06	□□□□□ -0.8
VPS33B-206	ENST00000557358	ZNF705E	A8MWA4	302 aa	Predicted RBP	10.06	□□□□□ -0.8
VPS33B-206	ENST00000557358	PRR20E	P86478	221 aa		10.06	□□□□□ -0.8
VPS33B-206	ENST00000557358	PRR20C	P86479	221 aa		10.06	□□□□□ -0.8
VPS33B-206	ENST00000557358	PRR20D	P86480	221 aa		10.06	□□□□□ -0.8
VPS33B-206	ENST00000557358	PRR20B	P86481	221 aa		10.06	□□□□□ -0.8
VPS33B-206	ENST00000557358	PRR20A	P86496	221 aa		10.06	□□□□□ -0.8
VPS33B-206	ENST00000557358	STOML3	Q8TAV4	291 aa		10.06	□□□□□ -0.8
VPS33B-206	ENST00000557358	TMEM37	Q8WXS4	190 aa		10.06	□□□□□ -0.8
VPS33B-206	ENST00000557358	TMEM208	Q9BTX3	173 aa		10.06	□□□□□ -0.8
VPS33B-206	ENST00000557358	NPCDR1	Q9BY65	106 aa		10.06	□□□□□ -0.8
VPS33B-206	ENST00000557358	GIG44	P09565	113 aa	Predicted RBP	10.05	□□□□□ -0.8
VPS33B-206	ENST00000557358	ATP6V0C	P27449	155 aa		10.05	□□□□□ -0.8
VPS33B-206	ENST00000557358	RHOB	P62745	196 aa		10.05	□□□□□ -0.8
VPS33B-206	ENST00000557358	PSG3	Q16557	428 aa		10.05	□□□□□ -0.8
VPS33B-206	ENST00000557358	GDF5OS	Q5U4N7	250 aa		10.05	□□□□□ -0.8
VPS33B-206	ENST00000557358	CEMP1	Q6PRD7	247 aa	Predicted RBP	10.05	□□□□□ -0.8
VPS33B-206	ENST00000557358	BAP18	Q8IXM2	172 aa		10.05	□□□□□ -0.8
VPS33B-206	ENST00000557358	GNPNAT1	Q96EK6	184 aa	Predicted RBP	10.05	□□□□□ -0.8
VPS33B-206	ENST00000557358	C20orf173	Q96LM9	149 aa		10.05	□□□□□ -0.8
VPS33B-206	ENST00000557358	TIMM9	Q9Y5J7	89 aa		10.05	□□□□□ -0.8
VPS33B-206	ENST00000557358	IGHV3OR16-12	A0A075B7B8	117 aa		10.04	□□□□□ -0.8
VPS33B-206	ENST00000557358	IGHV4-28	A0A0C4DH34	117 aa		10.04	□□□□□ -0.8
VPS33B-206	ENST00000557358	TMEM189	A5PLL7	270 aa		10.04	□□□□□ -0.8
VPS33B-206	ENST00000557358		F6UB75	175 aa		10.04	□□□□□ -0.8
VPS33B-206	ENST00000557358	DEFB4A	O15263	64 aa		10.04	□□□□□ -0.8
VPS33B-206	ENST00000557358	FXYD7	P58549	80 aa		10.04	□□□□□ -0.8
VPS33B-206	ENST00000557358	HIST1H1A	Q02539	215 aa	Predicted RBP	10.04	□□□□□ -0.8
VPS33B-206	ENST00000557358	RNF182	Q8N6D2	247 aa		10.04	□□□□□ -0.8
VPS33B-206	ENST00000557358	PSMG3	Q9BT73	122 aa	Predicted RBP	10.04	□□□□□ -0.8
VPS33B-206	ENST00000557358	HRH4	Q9H3N8	390 aa		10.04	□□□□□ -0.8
VPS33B-206	ENST00000557358	LCE6A	A0A183	80 aa		10.03	□□□□□ -0.8
VPS33B-206	ENST00000557358	C11orf94	C9JXX5	98 aa		10.03	□□□□□ -0.8
VPS33B-206	ENST00000557358	INS	P01308	110 aa		10.03	□□□□□ -0.8
VPS33B-206	ENST00000557358	HBE1	P02100	147 aa		10.03	□□□□□ -0.8
VPS33B-206	ENST00000557358	CNN1	P51911	297 aa	Known RBP	10.03	□□□□□ -0.8
VPS33B-206	ENST00000557358	DEFB1	P60022	68 aa		10.03	□□□□□ -0.8
VPS33B-206	ENST00000557358	IGFL4	Q6B9Z1	124 aa		10.03	□□□□□ -0.8
VPS33B-206	ENST00000557358		Q8NAQ8	132 aa		10.03	□□□□□ -0.8
VPS33B-206	ENST00000557358	CSNK1G2-AS1	Q8NCQ2	148 aa		10.03	□□□□□ -0.8
VPS33B-206	ENST00000557358	OR8A1	Q8NGG7	326 aa		10.03	□□□□□ -0.8
VPS33B-206	ENST00000557358	OR10J6P	Q8NGY7	276 aa		10.03	□□□□□ -0.8
VPS33B-206	ENST00000557358	PHLDA1	Q8WV24	401 aa	Predicted RBP	10.03	□□□□□ -0.8
VPS33B-206	ENST00000557358	RPUSD4	Q96CM3	377 aa	Known RBP	10.03	□□□□□ -0.8
VPS33B-206	ENST00000557358	NEU1	Q99519	415 aa		10.03	□□□□□ -0.8
VPS33B-206	ENST00000557358	SH3BGRL3	Q9H299	93 aa		10.03	□□□□□ -0.8
VPS33B-206	ENST00000557358	TRAV8-2	A0A0B4J237	113 aa		10.02	□□□□□ -0.81
VPS33B-206	ENST00000557358	TEX48	A0A1B0GUV7	120 aa		10.02	□□□□□ -0.81
VPS33B-206	ENST00000557358	NANOS2	P60321	138 aa	Known RBP	10.02	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms