RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 HLA-DRB4P13762 266 aa8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 ATP6V0CP27449 155 aa8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 HLA-DMBP28068 263 aa8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 RHOBP62745 196 aa8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 MORN3Q6PF18 240 aaPredicted RBP8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 Q6ZWC4 215 aa8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 BLNKQ8WV28 456 aa8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 SLC50A1Q9BRV3 221 aa8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 SLC25A2Q9BXI2 301 aa8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 OR51M1Q9H341 326 aa8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 HRH4Q9H3N8 390 aa8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 SAV1Q9H4B6 383 aaPredicted RBP8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 TMEM14CQ9P0S9 112 aa8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 HLA-DRB4X5D2U9 266 aa8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 AGRNO00468 2067 aa8.42□□□□□ -1.06
CCDC88C-212ENST00000556767 A0A1W2PPV4 95 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 H3BMM0 161 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 TAAR5O14804 337 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 OR7C2O60412 319 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 EIF3GO75821 320 aaKnown RBP eCLIP8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 PRB4P10163 310 aaPredicted RBP8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 HIST1H1EP10412 219 aaKnown RBP8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 SPP1P10451 314 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 CXCL2P19875 107 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 M6PRP20645 277 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 RAB2AP61019 212 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 NUTF2P61970 127 aaKnown RBP8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 PSG3Q16557 428 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 GUK1Q16774 197 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 FAM122CQ6P4D5 195 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 OR11H4Q8NGC9 324 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 OR10G4Q8NGN3 311 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 OR10G9Q8NGN4 311 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 OR10G7Q8NGN6 311 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 GNPNAT1Q96EK6 184 aaPredicted RBP8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 OVOL2Q9BRP0 275 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 PSMG3Q9BT73 122 aaPredicted RBP8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 PAXXQ9BUH6 204 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 SH3BGRL3Q9H299 93 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 ZNF331Q9NQX6 463 aaPredicted RBP8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 ZNF586Q9NXT0 402 aa8.41□□□□□ -1.06
CCDC88C-212ENST00000556767 HMSDA8MTL9 139 aa8.4□□□□□ -1.06
CCDC88C-212ENST00000556767 SLC17A3O00476 420 aa8.4□□□□□ -1.06
CCDC88C-212ENST00000556767 JTBO76095 146 aa8.4□□□□□ -1.06
CCDC88C-212ENST00000556767 OR10J4P0C629 311 aa8.4□□□□□ -1.06
CCDC88C-212ENST00000556767 ZNF705DP0CH99 300 aaPredicted RBP8.4□□□□□ -1.06
CCDC88C-212ENST00000556767 ZNF705BP0CI00 300 aaPredicted RBP8.4□□□□□ -1.06
CCDC88C-212ENST00000556767 FXYD7P58549 80 aa8.4□□□□□ -1.06
CCDC88C-212ENST00000556767 TAS2R45P59539 299 aa8.4□□□□□ -1.06
CCDC88C-212ENST00000556767 HIST1H1AQ02539 215 aaPredicted RBP8.4□□□□□ -1.06
CCDC88C-212ENST00000556767 RNF183Q96D59 192 aa8.4□□□□□ -1.06
CCDC88C-212ENST00000556767 ST6GAL2Q96JF0 529 aa8.4□□□□□ -1.06
CCDC88C-212ENST00000556767 FAM167A-AS1Q96KT0 104 aa8.4□□□□□ -1.06
CCDC88C-212ENST00000556767 ARPC5LQ9BPX5 153 aa8.4□□□□□ -1.06
CCDC88C-212ENST00000556767 CLEC5AQ9NY25 188 aa8.4□□□□□ -1.06
CCDC88C-212ENST00000556767 TRBV19A0A075B6N1 114 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 A0A0D9SG52 128 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 A0A0J9YX75 114 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 KANTRA0A1W2PQU2 76 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 HMGB3O15347 200 aaKnown RBP8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 PFDN1O60925 122 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 DUSP14O95147 198 aaKnown RBP8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 MBP02144 154 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 C4BPBP20851 252 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 UBE2L3P68036 154 aaKnown RBP8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 PSG9Q00887 426 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 ZNF345Q14585 488 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 KHDC3LQ587J8 217 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 AKAP14Q86UN6 197 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 KCNRGQ8N5I3 272 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 OR2G3Q8NGZ4 309 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 RNF141Q8WVD5 230 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 RPUSD4Q96CM3 377 aaKnown RBP8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 SAT2Q96F10 170 aaPredicted RBP8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 WWC2-AS2Q96NR7 200 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 AAMDCQ9H7C9 122 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 PPP1R14DQ9NXH3 145 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 XCL2Q9UBD3 114 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 TP53TG1Q9Y2A0 90 aa8.39□□□□□ -1.07
CCDC88C-212ENST00000556767 ZNF705FA8MVS1 300 aaPredicted RBP8.38□□□□□ -1.07
CCDC88C-212ENST00000556767 NBEAP1P0C6P0 100 aa8.38□□□□□ -1.07
CCDC88C-212ENST00000556767 CDC34P49427 236 aaPredicted RBP8.38□□□□□ -1.07
CCDC88C-212ENST00000556767 CNN1P51911 297 aaKnown RBP8.38□□□□□ -1.07
CCDC88C-212ENST00000556767 SERF2P84101 59 aa8.38□□□□□ -1.07
CCDC88C-212ENST00000556767 TMEM41BQ5BJD5 291 aa8.38□□□□□ -1.07
CCDC88C-212ENST00000556767 TCTE3Q8IZS6 198 aa8.38□□□□□ -1.07
CCDC88C-212ENST00000556767 OR8A1Q8NGG7 326 aa8.38□□□□□ -1.07
CCDC88C-212ENST00000556767 OR11H2Q8NH07 326 aa8.38□□□□□ -1.07
CCDC88C-212ENST00000556767 FXYD5Q96DB9 178 aa8.38□□□□□ -1.07
CCDC88C-212ENST00000556767 RARRES2Q99969 163 aa8.38□□□□□ -1.07
CCDC88C-212ENST00000556767 C1QTNF4Q9BXJ3 329 aa8.38□□□□□ -1.07
CCDC88C-212ENST00000556767 CYTL1Q9NRR1 136 aa8.38□□□□□ -1.07
CCDC88C-212ENST00000556767 ZNF253O75346 499 aa8.37□□□□□ -1.07
CCDC88C-212ENST00000556767 NDUFB4O95168 129 aa8.37□□□□□ -1.07
CCDC88C-212ENST00000556767 PDE6HQ13956 83 aa8.37□□□□□ -1.07
CCDC88C-212ENST00000556767 AKR1C8PQ5T2L2 129 aa8.37□□□□□ -1.07
CCDC88C-212ENST00000556767 EXOC3-AS1Q8N2X6 119 aa8.37□□□□□ -1.07
CCDC88C-212ENST00000556767 OR10J6PQ8NGY7 276 aa8.37□□□□□ -1.07
CCDC88C-212ENST00000556767 ZNF471Q9BX82 626 aaPredicted RBP8.37□□□□□ -1.07
CCDC88C-212ENST00000556767 ACTR3CQ9C0K3 210 aaPredicted RBP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms