RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 LHFPL4Q7Z7J7 247 aa8.67□□□□□ -1.02
SHMT2-216ENST00000554975 OR1B1Q8NGR6 318 aa8.67□□□□□ -1.02
SHMT2-216ENST00000554975 FMC1Q96HJ9 113 aa8.67□□□□□ -1.02
SHMT2-216ENST00000554975 HIST1H2BLQ99880 126 aa8.67□□□□□ -1.02
SHMT2-216ENST00000554975 ATG101Q9BSB4 218 aa8.67□□□□□ -1.02
SHMT2-216ENST00000554975 V9GYV3 84 aa8.67□□□□□ -1.02
SHMT2-216ENST00000554975 PGPEP1LA6NFU8 196 aa8.66□□□□□ -1.02
SHMT2-216ENST00000554975 TSTD3H0UI37 97 aa8.66□□□□□ -1.02
SHMT2-216ENST00000554975 K7EN84 100 aa8.66□□□□□ -1.02
SHMT2-216ENST00000554975 REG1AP05451 166 aa8.66□□□□□ -1.02
SHMT2-216ENST00000554975 IGLC1P0CG04 106 aa8.66□□□□□ -1.02
SHMT2-216ENST00000554975 MGST1P10620 155 aaKnown RBP8.66□□□□□ -1.02
SHMT2-216ENST00000554975 TMEM183BQ1AE95 376 aa8.66□□□□□ -1.02
SHMT2-216ENST00000554975 C5orf64Q2M2E5 130 aa8.66□□□□□ -1.02
SHMT2-216ENST00000554975 CT83Q5H943 113 aa8.66□□□□□ -1.02
SHMT2-216ENST00000554975 PYY3Q5JQD4 70 aa8.66□□□□□ -1.02
SHMT2-216ENST00000554975 ZNF329Q86UD4 541 aa8.66□□□□□ -1.02
SHMT2-216ENST00000554975 FXYD5Q96DB9 178 aa8.66□□□□□ -1.02
SHMT2-216ENST00000554975 TMEM68Q96MH6 324 aa8.66□□□□□ -1.02
SHMT2-216ENST00000554975 B9D2Q9BPU9 175 aa8.66□□□□□ -1.02
SHMT2-216ENST00000554975 GNB1LQ9BYB4 327 aa8.66□□□□□ -1.02
SHMT2-216ENST00000554975 OTORQ9NRC9 128 aa8.66□□□□□ -1.02
SHMT2-216ENST00000554975 CSMD3Q7Z407 3707 aa8.66□□□□□ -1.02
SHMT2-216ENST00000554975 IFITM10A6NMD0 228 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 I3L2K1 104 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 K7EQM0 130 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 GATCO43716 136 aaKnown RBP8.65□□□□□ -1.02
SHMT2-216ENST00000554975 TOMM40O96008 361 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 AMY1AP04745 511 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 SLC25A5P05141 298 aaKnown RBP8.65□□□□□ -1.02
SHMT2-216ENST00000554975 GP9P14770 177 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 ORM2P19652 201 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 LYZP61626 148 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 RANP62826 216 aaKnown RBP8.65□□□□□ -1.02
SHMT2-216ENST00000554975 CX3CL1P78423 397 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 HES1Q14469 280 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 JOSD1Q15040 202 aaPredicted RBP8.65□□□□□ -1.02
SHMT2-216ENST00000554975 USF2Q15853 346 aaPredicted RBP8.65□□□□□ -1.02
SHMT2-216ENST00000554975 ATP5L2Q7Z4Y8 100 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 BAGE2Q86Y30 109 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 LYPD1Q8N2G4 141 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 OR4F17Q8NGA8 305 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 ARPC1AQ92747 370 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 AJUBAQ96IF1 538 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 CITED2Q99967 270 aaPredicted RBP8.65□□□□□ -1.02
SHMT2-216ENST00000554975 MEGF9Q9H1U4 602 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 GSN-AS1Q9NRJ2 163 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 ZNF492Q9P255 531 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 HILPDAQ9Y5L2 63 aa8.65□□□□□ -1.02
SHMT2-216ENST00000554975 TRBV6-1A0A0K0K1D8 114 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 SERTM2A0A1B0GWG4 89 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 SMIM27A0A1W2PRY6 76 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 FBLL1A6NHQ2 334 aaKnown RBP8.64□□□□□ -1.03
SHMT2-216ENST00000554975 ZNF705GA8MUZ8 300 aaPredicted RBP8.64□□□□□ -1.03
SHMT2-216ENST00000554975 AMBPP02760 352 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 NBEAP1P0C6P0 100 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 PYYP10082 97 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 CNTFRP26992 372 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 BRS3P32247 399 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 MYCNOSP40205 109 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 MFAP2P55001 183 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 PAFAH1B2P68402 229 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 SSBP2P81877 361 aaPredicted RBP8.64□□□□□ -1.03
SHMT2-216ENST00000554975 EBI3Q14213 229 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 FXYD3Q14802 87 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 MLANAQ16655 118 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 IQCJQ1A5X6 159 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 PDZD11Q5EBL8 140 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 PATE2Q6UY27 113 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 BPIFA4PQ86YQ2 179 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 DYNAPQ8N1N2 210 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 GBGT1Q8N5D6 347 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 WFDC9Q8NEX5 89 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 CMTM2Q8TAZ6 248 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 WIPF2Q8TF74 440 aaPredicted RBP8.64□□□□□ -1.03
SHMT2-216ENST00000554975 GRAMD2BQ96HH9 432 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 WNT10AQ9GZT5 417 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 MRPL18Q9H0U6 180 aaKnown RBP8.64□□□□□ -1.03
SHMT2-216ENST00000554975 EPDR1Q9UM22 224 aa8.64□□□□□ -1.03
SHMT2-216ENST00000554975 IZUMO1RA6ND01 250 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 SNURFLB1AK76 121 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 FCN1O00602 326 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 ESDP10768 282 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 CRISP2P16562 243 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 CD33P20138 364 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 HOXD3P31249 432 aaPredicted RBP8.63□□□□□ -1.03
SHMT2-216ENST00000554975 MFAP4P55083 255 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 TPPP2P59282 170 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 PDE6HQ13956 83 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 FAM162BQ5T6X4 162 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 ZNF562Q6V9R5 426 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 NDUFA11Q86Y39 141 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 OR8I2Q8N0Y5 310 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 ARL6IP6Q8N6S5 226 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 OR4B1Q8NGF8 309 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 GPR82Q96P67 336 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 TXN2Q99757 166 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 SHANK2-AS3Q9BTD1 123 aa8.63□□□□□ -1.03
SHMT2-216ENST00000554975 ZNF331Q9NQX6 463 aaPredicted RBP8.63□□□□□ -1.03
SHMT2-216ENST00000554975 SERTAD4Q9NUC0 356 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms